Strain Fitness in Sphingobium sp. HT1-2 around GFF3037

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,110,100	+				-0.5
3,110,100	+				-0.4
3,110,102	+				-1.9
3,110,102	+				+1.6
3,110,105	+				+0.7
3,110,108	-				-0.9
3,110,108	-				-0.9
3,110,110	-				-1.7
3,110,116	+				-0.7
3,110,117	+				-0.4
3,110,125	-				+1.2
3,110,127	+				-0.7
3,110,127	+				+0.7
3,110,133	+				-1.9
3,110,135	+				+0.7
3,110,141	-				-1.3
3,110,141	-				-0.0
3,110,141	-				+0.0
3,110,141	-				-1.9
3,110,143	-		GFF3036	0.10	-0.3
3,110,152	+		GFF3036	0.12	-1.8
3,110,155	-		GFF3036	0.13	-1.9
3,110,155	-		GFF3036	0.13	+0.0
3,110,174	-		GFF3036	0.18	+0.5
3,110,187	-		GFF3036	0.22	-0.5
3,110,188	+		GFF3036	0.22	-1.6
3,110,229	+		GFF3036	0.33	-0.5
3,110,229	+		GFF3036	0.33	-0.5
3,110,229	+		GFF3036	0.33	-0.0
3,110,234	+		GFF3036	0.34	-0.4
3,110,234	+		GFF3036	0.34	+0.2
3,110,237	-		GFF3036	0.35	-0.5
3,110,242	-		GFF3036	0.36	-0.5
3,110,242	-		GFF3036	0.36	-1.2
3,110,252	-		GFF3036	0.39	-0.4
3,110,254	+		GFF3036	0.39	-0.4
3,110,255	+		GFF3036	0.39	-0.5
3,110,264	+		GFF3036	0.42	-0.8
3,110,264	+		GFF3036	0.42	+0.7
3,110,266	+		GFF3036	0.42	+0.9
3,110,272	-		GFF3036	0.44	-0.4
3,110,272	-		GFF3036	0.44	+0.6
3,110,272	-		GFF3036	0.44	-1.8
3,110,274	+		GFF3036	0.44	+0.1
3,110,274	+		GFF3036	0.44	+0.5
3,110,282	-		GFF3036	0.46	-0.4
3,110,282	-		GFF3036	0.46	+1.0
3,110,284	+		GFF3036	0.47	+0.5
3,110,284	+		GFF3036	0.47	-1.0
3,110,286	+		GFF3036	0.48	-1.3
3,110,327	-		GFF3036	0.58	-0.4
3,110,337	-		GFF3036	0.61	-1.8
3,110,364	+		GFF3036	0.68	-0.9
3,110,369	+		GFF3036	0.69	-0.5
3,110,374	+		GFF3036	0.71	-0.8
3,110,374	+		GFF3036	0.71	+0.3
3,110,374	+		GFF3036	0.71	+0.4
3,110,374	+		GFF3036	0.71	+0.2
3,110,377	-		GFF3036	0.71	-0.2
3,110,377	-		GFF3036	0.71	-1.2
3,110,377	-		GFF3036	0.71	+0.5
3,110,381	+		GFF3036	0.72	-2.1
3,110,381	+		GFF3036	0.72	-0.0
3,110,382	-		GFF3036	0.73	-0.4
3,110,382	-		GFF3036	0.73	-1.4
3,110,382	-		GFF3036	0.73	-0.9
3,110,383	-		GFF3036	0.73	-0.0
3,110,386	+		GFF3036	0.74	-0.8
3,110,386	+		GFF3036	0.74	+1.2
3,110,386	+		GFF3036	0.74	-1.7
3,110,386	+		GFF3036	0.74	-1.1
3,110,389	-		GFF3036	0.75	-0.8
3,110,389	-		GFF3036	0.75	+0.2
3,110,389	-		GFF3036	0.75	-2.5
3,110,389	-		GFF3036	0.75	+0.3
3,110,394	-		GFF3036	0.76	-1.5
3,110,394	-		GFF3036	0.76	+0.2
3,110,394	-		GFF3036	0.76	-1.4
3,110,406	-		GFF3036	0.79	-0.3
3,110,417	+		GFF3036	0.82	-0.3
3,110,417	-		GFF3036	0.82	-1.2
3,110,417	-		GFF3036	0.82	-0.7
3,110,417	-		GFF3036	0.82	+0.6
3,110,417	-		GFF3036	0.82	+0.6
3,110,429	+		GFF3036	0.85	-1.5
3,110,429	+		GFF3036	0.85	-0.1
3,110,429	+		GFF3036	0.85	+0.4
3,110,429	+		GFF3036	0.85	-0.9
3,110,437	-		GFF3036	0.87	+0.5
3,110,439	-		GFF3036	0.88	-1.0
3,110,442	-		GFF3036	0.88	-0.6
3,110,469	+				-0.9
3,110,477	-				-1.5
3,110,501	-				+0.5
3,110,501	-				-1.8
3,110,506	+				-1.1
3,110,563	-				+0.8
3,110,565	-				-1.4
3,110,653	+				-1.8
3,110,653	+				+0.2
3,110,655	+				-1.5
3,110,694	+				-0.8
3,110,694	+				-1.8
3,110,720	+				+0.7
3,110,720	+				-1.2
3,110,720	+				-0.5
3,110,720	+				-1.1
3,110,720	+				-1.8
3,110,720	+				-1.7
3,110,721	-				-1.2
3,110,728	-				-2.1
3,110,730	+				+0.2
3,110,730	+				-0.0
3,110,730	+				+0.6
3,110,730	+				-0.5
3,110,730	+				-0.2
3,110,730	+				+1.5
3,110,730	+				-0.7
3,110,730	+				+0.3
3,110,730	+				+0.8
3,110,730	+				-0.7
3,110,733	-				-1.4
3,110,733	-				-1.2
3,110,735	+				-2.9
3,110,738	-				-1.0
3,110,738	-				-0.4
3,110,738	-				-0.5
3,110,738	-				-1.3
3,110,738	-				+0.5
3,110,738	-				+0.2
3,110,738	-				-0.3
3,110,738	-				+0.0
3,110,738	-				-1.7
3,110,744	-				-1.5
3,110,748	+				+0.1
3,110,748	+				-2.2
3,110,748	+				-2.3
3,110,748	+				-0.4
3,110,748	+				-1.0
3,110,748	+				-2.9
3,110,756	+				-0.5
3,110,756	-				+1.2
3,110,756	-				+0.7
3,110,756	-				+0.7
3,110,756	-				-0.4
3,110,756	-				+0.3
3,110,756	-				-2.3
3,110,756	-				-0.2
3,110,762	-				-1.5
3,110,763	+				+1.2
3,110,763	+				-1.5
3,110,763	-				-1.2
3,110,764	-				-0.4
3,110,764	-				-0.7
3,110,788	+				+0.2
3,110,819	-				+0.7
3,110,835	+				-1.0
3,110,835	+				-1.2
3,110,851	+				-0.8
3,110,867	+				-1.2
3,110,874	-				-1.0
3,110,891	+				-1.1
3,110,938	+				-2.0
3,110,938	+				-0.8
3,110,938	+				-0.8
3,111,000	-				-0.1
3,111,013	+				+0.7
3,111,073	+				-0.1
3,111,117	-				+0.2
3,111,129	+				+0.8
3,111,145	-				-1.1
3,111,148	+				+0.4
3,111,148	+				-0.3
3,111,155	-				-0.8
3,111,173	-				-1.3
3,111,176	+				-1.2
3,111,180	+				+1.2
3,111,180	+				-1.8
3,111,189	-				-0.3
3,111,190	+				-0.9
3,111,197	+				-0.8
3,111,197	+				-0.5
3,111,197	+				-2.0
3,111,198	-				+0.3
3,111,205	-				-0.4
3,111,232	+				+1.7
3,111,240	-				-0.3
3,111,242	+				-0.5
3,111,264	-				-0.4
3,111,274	-				-0.4
3,111,290	+				-0.7
3,111,295	+				+1.2
3,111,303	-				+0.5
3,111,303	-				+0.4
3,111,314	-				-0.3
3,111,410	-		GFF3037	0.13	+0.3
3,111,410	-		GFF3037	0.13	-0.8
3,111,424	+		GFF3037	0.14	+1.3
3,111,424	+		GFF3037	0.14	+1.6
3,111,447	+		GFF3037	0.15	-0.8
3,111,457	+		GFF3037	0.15	-1.0
3,111,546	-		GFF3037	0.19	-0.0
3,111,551	+		GFF3037	0.19	-0.5
3,111,559	-		GFF3037	0.19	-0.3
3,111,572	-		GFF3037	0.20	+0.6
3,111,577	-		GFF3037	0.20	-0.7
3,111,585	+		GFF3037	0.20	-0.7
3,111,598	+		GFF3037	0.21	+1.3
3,111,598	+		GFF3037	0.21	+0.2
3,111,598	+		GFF3037	0.21	-1.2
3,111,598	+		GFF3037	0.21	+1.6
3,111,598	+		GFF3037	0.21	+0.8
3,111,598	+		GFF3037	0.21	-0.3
3,111,606	-		GFF3037	0.21	-1.0
3,111,606	-		GFF3037	0.21	+0.0
3,111,606	-		GFF3037	0.21	-0.5
3,111,606	-		GFF3037	0.21	-1.0
3,111,622	+		GFF3037	0.22	-0.1
3,111,630	-		GFF3037	0.22	-0.3
3,111,630	-		GFF3037	0.22	-0.8
3,111,643	+		GFF3037	0.23	-0.4
3,111,651	+		GFF3037	0.23	-2.2
3,111,651	+		GFF3037	0.23	-0.2
3,111,658	+		GFF3037	0.23	-0.9
3,111,658	+		GFF3037	0.23	+0.3
3,111,659	-		GFF3037	0.23	+0.1
3,111,666	-		GFF3037	0.24	-2.1
3,111,666	-		GFF3037	0.24	-0.9
3,111,666	-		GFF3037	0.24	-2.2
3,111,678	-		GFF3037	0.24	-0.3
3,111,692	+		GFF3037	0.25	+0.8
3,111,692	+		GFF3037	0.25	-0.7
3,111,692	+		GFF3037	0.25	-0.6
3,111,692	+		GFF3037	0.25	-1.3
3,111,696	-		GFF3037	0.25	+0.1
3,111,700	+		GFF3037	0.25	-1.8
3,111,700	-		GFF3037	0.25	-0.1
3,111,700	-		GFF3037	0.25	-1.6
3,111,708	-		GFF3037	0.25	+0.3
3,111,735	+		GFF3037	0.27	-0.8
3,111,735	+		GFF3037	0.27	-1.8
3,111,735	+		GFF3037	0.27	-1.1
3,111,735	+		GFF3037	0.27	-0.8
3,111,738	-		GFF3037	0.27	-0.3
3,111,743	-		GFF3037	0.27	+0.1
3,111,743	-		GFF3037	0.27	-0.3
3,111,743	-		GFF3037	0.27	+1.7
3,111,743	-		GFF3037	0.27	-0.8
3,111,745	-		GFF3037	0.27	-1.5
3,111,761	+		GFF3037	0.28	-0.9
3,111,769	+		GFF3037	0.28	+0.5
3,111,769	+		GFF3037	0.28	+0.2
3,111,769	+		GFF3037	0.28	-0.7
3,111,777	-		GFF3037	0.28	-0.5
3,111,782	-		GFF3037	0.28	-1.2
3,111,799	-		GFF3037	0.29	-0.7
3,111,818	-		GFF3037	0.30	-1.9
3,111,850	+		GFF3037	0.31	-0.2
3,111,850	+		GFF3037	0.31	-0.9
3,111,850	+		GFF3037	0.31	-0.5
3,111,858	-		GFF3037	0.32	-1.5
3,111,858	-		GFF3037	0.32	-0.9
3,111,858	-		GFF3037	0.32	-0.8
3,111,858	-		GFF3037	0.32	+1.2
3,111,884	-		GFF3037	0.33	-1.3
3,111,902	+		GFF3037	0.33	-2.0
3,111,949	-		GFF3037	0.35	-0.4
3,111,969	+		GFF3037	0.36	-0.8
3,111,978	+		GFF3037	0.37	-0.3
3,111,981	-		GFF3037	0.37	-1.5
3,111,983	+		GFF3037	0.37	+0.4
3,111,983	+		GFF3037	0.37	+0.2
3,111,983	+		GFF3037	0.37	-0.5
3,111,983	+		GFF3037	0.37	-0.3
3,111,983	+		GFF3037	0.37	-1.5
3,111,983	+		GFF3037	0.37	-0.5
3,111,983	+		GFF3037	0.37	+0.7
3,111,985	+		GFF3037	0.37	-1.0
3,111,985	+		GFF3037	0.37	-0.9
3,111,986	-		GFF3037	0.37	-1.4
3,111,991	-		GFF3037	0.37	+0.7
3,111,993	-		GFF3037	0.37	-1.2
3,111,993	-		GFF3037	0.37	-0.1
3,111,993	-		GFF3037	0.37	+0.6
3,111,995	+		GFF3037	0.37	-0.4
3,112,002	+		GFF3037	0.38	-0.7
3,112,002	+		GFF3037	0.38	-0.4
3,112,010	-		GFF3037	0.38	-1.1
3,112,033	-		GFF3037	0.39	-0.7
3,112,048	+		GFF3037	0.39	-0.5
3,112,050	-		GFF3037	0.40	-1.5
3,112,063	+		GFF3037	0.40	-0.4
3,112,070	+		GFF3037	0.40	-0.3
3,112,070	+		GFF3037	0.40	-1.0
3,112,078	-		GFF3037	0.41	-1.1
3,112,084	-		GFF3037	0.41	-1.8
3,112,084	-		GFF3037	0.41	+0.7
3,112,091	+		GFF3037	0.41	-1.7
3,112,106	+		GFF3037	0.42	-0.9
3,112,129	+		GFF3037	0.43	-0.7
3,112,162	+		GFF3037	0.44	-1.4
3,112,194	-		GFF3037	0.46	-0.7
3,112,199	-		GFF3037	0.46	-0.1
3,112,221	-		GFF3037	0.47	-0.3
3,112,221	-		GFF3037	0.47	-0.7
3,112,231	+		GFF3037	0.47	+0.5
3,112,239	-		GFF3037	0.47	-1.8
3,112,239	-		GFF3037	0.47	-1.8
3,112,239	-		GFF3037	0.47	-0.9
3,112,244	-		GFF3037	0.48	-0.4
3,112,244	-		GFF3037	0.48	+1.3
3,112,245	-		GFF3037	0.48	-1.9
3,112,254	-		GFF3037	0.48	-1.4
3,112,257	+		GFF3037	0.48	+0.4
3,112,258	-		GFF3037	0.48	+0.5
3,112,275	+		GFF3037	0.49	-0.3
3,112,302	-		GFF3037	0.50	-0.1
3,112,312	-		GFF3037	0.50	-0.7
3,112,347	-		GFF3037	0.52	+0.4
3,112,362	+		GFF3037	0.52	-0.6
3,112,370	-		GFF3037	0.53	+0.8
3,112,370	-		GFF3037	0.53	-0.3
3,112,371	+		GFF3037	0.53	-1.3
3,112,396	+		GFF3037	0.54	-0.2
3,112,417	-		GFF3037	0.55	-0.3
3,112,442	-		GFF3037	0.56	-0.9
3,112,478	-		GFF3037	0.57	+0.3
3,112,478	-		GFF3037	0.57	+0.0
3,112,484	+		GFF3037	0.58	-1.7
3,112,494	+		GFF3037	0.58	-0.4
3,112,494	+		GFF3037	0.58	-0.8
3,112,502	-		GFF3037	0.58	-0.7
3,112,502	-		GFF3037	0.58	+0.2
3,112,505	+		GFF3037	0.58	-0.5
3,112,507	-		GFF3037	0.58	-0.8
3,112,507	-		GFF3037	0.58	-0.2
3,112,513	-		GFF3037	0.59	-1.6
3,112,537	+		GFF3037	0.60	+0.3
3,112,565	+		GFF3037	0.61	-0.4
3,112,573	-		GFF3037	0.61	+0.9
3,112,584	-		GFF3037	0.62	+0.5
3,112,586	+		GFF3037	0.62	-0.0
3,112,586	+		GFF3037	0.62	-0.5
3,112,586	+		GFF3037	0.62	+0.7
3,112,586	+		GFF3037	0.62	-0.8
3,112,594	-		GFF3037	0.62	+0.3
3,112,627	+		GFF3037	0.63	-0.1
3,112,656	-		GFF3037	0.65	-1.7
3,112,656	-		GFF3037	0.65	+0.3
3,112,667	-		GFF3037	0.65	+0.7
3,112,683	-		GFF3037	0.66	+0.9
3,112,698	-		GFF3037	0.66	-0.7
3,112,705	-		GFF3037	0.67	+0.6
3,112,717	+		GFF3037	0.67	-1.1
3,112,717	+		GFF3037	0.67	-0.7
3,112,725	-		GFF3037	0.67	-1.2
3,112,725	-		GFF3037	0.67	-1.1
3,112,741	+		GFF3037	0.68	-2.0
3,112,770	-		GFF3037	0.69	+0.1
3,112,778	-		GFF3037	0.70	+0.5
3,112,781	+		GFF3037	0.70	-0.8
3,112,781	+		GFF3037	0.70	-2.0
3,112,781	+		GFF3037	0.70	-2.4
3,112,789	+		GFF3037	0.70	+0.7
3,112,789	+		GFF3037	0.70	-1.2
3,112,789	-		GFF3037	0.70	+0.4
3,112,797	-		GFF3037	0.70	-0.6
3,112,803	+		GFF3037	0.71	-0.7
3,112,804	+		GFF3037	0.71	-1.3
3,112,812	-		GFF3037	0.71	-0.8
3,112,850	+		GFF3037	0.73	-1.3
3,112,861	+		GFF3037	0.73	-1.7
3,112,861	+		GFF3037	0.73	-0.8
3,112,864	-		GFF3037	0.73	-2.3
3,112,875	-		GFF3037	0.74	-1.6
3,112,877	-		GFF3037	0.74	+0.3
3,112,903	+		GFF3037	0.75	-0.7
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3,112,907	+		GFF3037	0.75	-2.1
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3,113,273	-				+1.0
3,113,276	-				-1.0
3,113,289	-				-0.8
3,113,297	-				-0.5
3,113,297	-				-1.1
3,113,297	-				-0.8
3,113,297	-				+0.2
3,113,297	-				-1.5
3,113,297	-				-1.8
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3,113,307	-				-0.7
3,113,307	-				-1.0
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3,113,357	+				-1.1
3,113,358	-				-1.7
3,113,364	+				-0.1
3,113,381	-				-0.3
3,113,383	+				-0.6
3,113,383	+				-1.1
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3,113,391	-				-1.1
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3,113,448	+				-0.9
3,113,453	+				+0.6
3,113,454	-				+0.2
3,113,454	-				-0.3
3,113,456	-				+0.0
3,113,456	-				-0.1
3,113,461	-				-0.7
3,113,476	-				+0.1
3,113,487	+				-0.7
3,113,504	+				+0.9
3,113,504	+				-0.4
3,113,505	+				-0.5
3,113,505	+				-0.2
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3,113,512	-				+0.3
3,113,512	-				-2.7
3,113,512	-				-0.2
3,113,512	-				-1.3
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3,113,535	-				-1.0
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3,113,648	+				-0.4
3,113,648	+				-1.8
3,113,648	+				-1.9
3,113,648	+				-1.1
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3,113,648	+				+0.3
3,113,648	+				+1.1
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3,113,648	+				-1.4
3,113,648	+				-1.5
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3,113,648	+				-0.6
3,113,648	+				+0.4
3,113,648	+				-0.9
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3,113,965	+				-0.5
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3,113,983	+				+0.3
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3,114,008	-				+0.3
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3,114,077	+				+0.6
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3,114,085	-				-2.0
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