Strain Fitness in Sphingobium sp. HT1-2 around GFF3025

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,097,819	+		GFF3024	0.18	+1.5
3,097,819	+		GFF3024	0.18	-1.0
3,097,819	+		GFF3024	0.18	+0.7
3,097,819	-		GFF3024	0.18	+1.5
3,097,827	-		GFF3024	0.19	+0.4
3,097,837	-		GFF3024	0.20	+1.5
3,097,839	+		GFF3024	0.20	-0.4
3,097,839	+		GFF3024	0.20	+0.2
3,097,845	+		GFF3024	0.20	-0.8
3,097,847	-		GFF3024	0.21	+0.1
3,097,853	-		GFF3024	0.21	-0.6
3,097,853	-		GFF3024	0.21	+0.4
3,097,853	-		GFF3024	0.21	-0.9
3,097,853	-		GFF3024	0.21	+1.2
3,097,853	-		GFF3024	0.21	-0.3
3,097,853	-		GFF3024	0.21	+2.4
3,098,000	-		GFF3024	0.33	+0.6
3,098,000	-		GFF3024	0.33	+2.2
3,098,043	-		GFF3024	0.37	+0.3
3,098,081	-		GFF3024	0.40	-0.8
3,098,129	+		GFF3024	0.44	+0.3
3,098,129	+		GFF3024	0.44	+0.2
3,098,137	-		GFF3024	0.45	+0.4
3,098,137	-		GFF3024	0.45	+0.8
3,098,137	-		GFF3024	0.45	+1.2
3,098,139	+		GFF3024	0.45	+1.5
3,098,158	-		GFF3024	0.46	+0.4
3,098,169	+		GFF3024	0.47	+0.2
3,098,175	+		GFF3024	0.48	-0.1
3,098,183	-		GFF3024	0.48	-1.7
3,098,204	-		GFF3024	0.50	-2.6
3,098,221	+		GFF3024	0.52	-1.0
3,098,226	+		GFF3024	0.52	+0.5
3,098,226	+		GFF3024	0.52	+0.8
3,098,226	+		GFF3024	0.52	+0.7
3,098,234	-		GFF3024	0.53	-0.9
3,098,239	+		GFF3024	0.53	-1.1
3,098,239	+		GFF3024	0.53	-0.6
3,098,247	-		GFF3024	0.54	-0.7
3,098,265	+		GFF3024	0.55	-0.8
3,098,268	-		GFF3024	0.55	-0.6
3,098,270	+		GFF3024	0.56	-0.7
3,098,293	-		GFF3024	0.58	+2.5
3,098,322	+		GFF3024	0.60	-0.1
3,098,322	+		GFF3024	0.60	+0.5
3,098,335	-		GFF3024	0.61	+0.4
3,098,335	-		GFF3024	0.61	-0.5
3,098,351	+		GFF3024	0.62	+1.7
3,098,364	+		GFF3024	0.63	-0.3
3,098,364	+		GFF3024	0.63	-0.8
3,098,365	+		GFF3024	0.64	+0.9
3,098,367	-		GFF3024	0.64	-2.0
3,098,373	-		GFF3024	0.64	+1.1
3,098,395	+		GFF3024	0.66	+0.7
3,098,403	-		GFF3024	0.67	-1.0
3,098,414	-		GFF3024	0.68	+0.1
3,098,417	-		GFF3024	0.68	+2.5
3,098,419	+		GFF3024	0.68	-1.0
3,098,419	+		GFF3024	0.68	+1.2
3,098,419	+		GFF3024	0.68	-1.4
3,098,427	-		GFF3024	0.69	-0.4
3,098,439	-		GFF3024	0.70	-1.3
3,098,441	+		GFF3024	0.70	+0.9
3,098,441	+		GFF3024	0.70	-0.7
3,098,446	+		GFF3024	0.70	-1.6
3,098,449	-		GFF3024	0.70	-0.9
3,098,451	+		GFF3024	0.71	-1.1
3,098,451	+		GFF3024	0.71	+0.2
3,098,451	+		GFF3024	0.71	-0.3
3,098,451	+		GFF3024	0.71	+0.2
3,098,454	-		GFF3024	0.71	-0.3
3,098,459	-		GFF3024	0.71	+1.3
3,098,464	-		GFF3024	0.72	-1.1
3,098,464	-		GFF3024	0.72	+0.8
3,098,510	-		GFF3024	0.76	+1.3
3,098,513	+		GFF3024	0.76	-1.0
3,098,516	-		GFF3024	0.76	+0.4
3,098,518	+		GFF3024	0.76	-0.3
3,098,525	+		GFF3024	0.77	-1.7
3,098,525	+		GFF3024	0.77	+1.2
3,098,526	-		GFF3024	0.77	+0.9
3,098,535	+		GFF3024	0.78	+0.9
3,098,538	-		GFF3024	0.78	+0.8
3,098,540	+		GFF3024	0.78	+1.5
3,098,547	+		GFF3024	0.79	+0.0
3,098,548	-		GFF3024	0.79	-1.6
3,098,548	-		GFF3024	0.79	-1.5
3,098,548	-		GFF3024	0.79	+1.8
3,098,548	-		GFF3024	0.79	+0.4
3,098,548	-		GFF3024	0.79	-0.5
3,098,548	-		GFF3024	0.79	-0.1
3,098,548	-		GFF3024	0.79	-1.9
3,098,548	-		GFF3024	0.79	-0.5
3,098,553	+		GFF3024	0.79	-0.2
3,098,564	-		GFF3024	0.80	+1.5
3,098,564	-		GFF3024	0.80	-0.2
3,098,571	+		GFF3024	0.81	+1.5
3,098,573	+		GFF3024	0.81	-0.4
3,098,573	+		GFF3024	0.81	-1.2
3,098,579	-		GFF3024	0.81	-0.6
3,098,579	-		GFF3024	0.81	-0.8
3,098,581	-		GFF3024	0.81	-0.7
3,098,629	+		GFF3024	0.85	+1.7
3,098,650	+		GFF3024	0.87	+0.1
3,098,658	-		GFF3024	0.88	+0.0
3,098,675	+		GFF3024	0.89	+2.1
3,098,680	+		GFF3024	0.90	-0.7
3,098,729	+				+1.5
3,098,737	-				-0.6
3,098,754	-				-0.6
3,098,754	-				-0.4
3,098,762	-				+0.3
3,098,762	-				-0.2
3,098,889	+				-0.9
3,098,892	-				-0.6
3,098,892	-				+0.2
3,098,892	-				-0.1
3,098,923	+				+0.1
3,098,931	-				-0.2
3,098,956	-		GFF3025	0.12	-2.2
3,098,969	+		GFF3025	0.12	-0.6
3,098,969	+		GFF3025	0.12	-1.8
3,098,977	-		GFF3025	0.13	+0.3
3,099,019	+		GFF3025	0.16	-0.1
3,099,024	+		GFF3025	0.16	+0.0
3,099,024	+		GFF3025	0.16	-2.8
3,099,027	-		GFF3025	0.17	-0.1
3,099,027	-		GFF3025	0.17	-1.9
3,099,029	+		GFF3025	0.17	-0.9
3,099,029	+		GFF3025	0.17	+2.9
3,099,029	+		GFF3025	0.17	-1.7
3,099,029	+		GFF3025	0.17	+0.4
3,099,029	+		GFF3025	0.17	+0.5
3,099,032	-		GFF3025	0.17	+3.5
3,099,037	-		GFF3025	0.17	-0.1
3,099,037	-		GFF3025	0.17	-1.1
3,099,037	-		GFF3025	0.17	-0.6
3,099,037	-		GFF3025	0.17	-0.2
3,099,056	+		GFF3025	0.19	+0.2
3,099,059	-		GFF3025	0.19	-0.9
3,099,185	+		GFF3025	0.28	+0.2
3,099,194	+		GFF3025	0.28	-0.1
3,099,211	+		GFF3025	0.30	-0.4
3,099,342	-		GFF3025	0.39	+0.4
3,099,359	+		GFF3025	0.40	-1.0
3,099,372	+		GFF3025	0.41	+1.1
3,099,394	+		GFF3025	0.43	-0.1
3,099,394	+		GFF3025	0.43	+0.1
3,099,402	-		GFF3025	0.43	+2.3
3,099,412	+		GFF3025	0.44	-1.1
3,099,412	+		GFF3025	0.44	-0.5
3,099,413	+		GFF3025	0.44	-0.5
3,099,413	+		GFF3025	0.44	-1.4
3,099,413	+		GFF3025	0.44	+0.5
3,099,413	+		GFF3025	0.44	-1.2
3,099,413	+		GFF3025	0.44	+0.4
3,099,413	+		GFF3025	0.44	-0.9
3,099,413	+		GFF3025	0.44	-0.1
3,099,413	+		GFF3025	0.44	+1.8
3,099,419	-		GFF3025	0.44	+0.1
3,099,421	-		GFF3025	0.45	+2.1
3,099,421	-		GFF3025	0.45	+1.5
3,099,421	-		GFF3025	0.45	+1.3
3,099,421	-		GFF3025	0.45	-1.8
3,099,442	+		GFF3025	0.46	-1.7
3,099,442	+		GFF3025	0.46	-0.1
3,099,442	+		GFF3025	0.46	-0.4
3,099,474	+		GFF3025	0.48	-1.0
3,099,482	-		GFF3025	0.49	+0.2
3,099,482	-		GFF3025	0.49	-0.8
3,099,484	+		GFF3025	0.49	+2.4
3,099,484	+		GFF3025	0.49	-0.5
3,099,484	+		GFF3025	0.49	-1.6
3,099,484	+		GFF3025	0.49	-0.9
3,099,484	+		GFF3025	0.49	-0.8
3,099,492	-		GFF3025	0.50	-1.3
3,099,492	-		GFF3025	0.50	+0.4
3,099,492	-		GFF3025	0.50	+0.3
3,099,492	-		GFF3025	0.50	-0.5
3,099,492	-		GFF3025	0.50	+0.2
3,099,492	-		GFF3025	0.50	-0.8
3,099,492	-		GFF3025	0.50	-0.4
3,099,509	-		GFF3025	0.51	-1.1
3,099,512	-		GFF3025	0.51	-0.6
3,099,561	+		GFF3025	0.55	+1.8
3,099,561	+		GFF3025	0.55	+0.4
3,099,575	+		GFF3025	0.56	+0.0
3,099,582	+		GFF3025	0.56	+0.2
3,099,590	-		GFF3025	0.57	-1.5
3,099,590	-		GFF3025	0.57	+1.2
3,099,600	+		GFF3025	0.57	+2.0
3,099,600	+		GFF3025	0.57	+0.9
3,099,604	-		GFF3025	0.58	+0.7
3,099,633	-		GFF3025	0.60	-1.3
3,099,657	-		GFF3025	0.61	-0.6
3,099,711	+		GFF3025	0.65	+0.1
3,099,728	-		GFF3025	0.66	+0.5
3,099,730	+		GFF3025	0.67	-2.4
3,099,737	+		GFF3025	0.67	-1.4
3,099,757	-		GFF3025	0.68	+1.5
3,099,762	-		GFF3025	0.69	+0.6
3,099,785	-		GFF3025	0.70	-0.5
3,099,809	-		GFF3025	0.72	-0.1
3,099,817	+		GFF3025	0.73	-0.0
3,099,830	+		GFF3025	0.74	-1.3
3,099,830	+		GFF3025	0.74	-0.5
3,099,833	+		GFF3025	0.74	+0.9
3,099,835	+		GFF3025	0.74	-0.9
3,099,838	-		GFF3025	0.74	+0.5
3,099,843	-		GFF3025	0.75	-0.9
3,099,843	-		GFF3025	0.75	+0.7
3,099,847	-		GFF3025	0.75	-0.8
3,099,848	-		GFF3025	0.75	+1.0
3,099,851	-		GFF3025	0.75	+0.4
3,099,876	+		GFF3025	0.77	+2.2
3,099,876	+		GFF3025	0.77	-0.3
3,099,876	+		GFF3025	0.77	+1.3
3,099,876	+		GFF3025	0.77	-0.7
3,099,876	+		GFF3025	0.77	+1.7
3,099,876	+		GFF3025	0.77	+1.3
3,099,876	+		GFF3025	0.77	+1.5
3,099,884	-		GFF3025	0.77	+0.4
3,099,884	-		GFF3025	0.77	+0.4
3,099,899	+		GFF3025	0.79	-0.9
3,099,903	-		GFF3025	0.79	-0.6
3,099,931	+		GFF3025	0.81	+1.5
3,099,931	+		GFF3025	0.81	+1.2
3,099,939	-		GFF3025	0.81	+0.4
3,099,941	+		GFF3025	0.82	+0.8
3,099,951	+		GFF3025	0.82	+0.5
3,099,959	-		GFF3025	0.83	+1.1
3,099,973	+		GFF3025	0.84	-0.6
3,099,974	+		GFF3025	0.84	+0.1
3,099,982	-		GFF3025	0.84	-0.8
3,099,982	-		GFF3025	0.84	-0.6
3,099,982	-		GFF3025	0.84	+0.9
3,099,991	-		GFF3025	0.85	-0.2
3,100,001	-		GFF3025	0.86	-2.2
3,100,013	-		GFF3025	0.87	-0.7
3,100,040	+		GFF3025	0.89	+1.1
3,100,044	+		GFF3025	0.89	-0.3
3,100,087	-				+0.5
3,100,087	-				-1.7
3,100,087	-				+0.1
3,100,087	-				+0.9
3,100,087	-				-1.3
3,100,087	-				-0.4
3,100,087	-				-1.6
3,100,087	-				-1.3
3,100,087	-				+1.7
3,100,096	+				+0.6
3,100,104	-				-0.1
3,100,104	-				-0.1
3,100,104	-				-0.7
3,100,104	-				+0.9
3,100,137	-				-1.1
3,100,139	-				-0.3
3,100,147	-				+0.2
3,100,151	-				-0.6
3,100,171	-				-0.8
3,100,171	-				+1.0
3,100,173	+				-0.7
3,100,185	+				-0.1
3,100,185	+				-1.5
3,100,188	-				+0.4
3,100,214	-				-0.7
3,100,251	-				-0.2
3,100,260	-				-0.0
3,100,326	+		GFF3026	0.12	-1.3
3,100,381	+		GFF3026	0.19	+0.4
3,100,435	+		GFF3026	0.26	-0.7
3,100,440	+		GFF3026	0.27	+1.2
3,100,440	+		GFF3026	0.27	-1.6
3,100,443	-		GFF3026	0.27	+0.9
3,100,443	-		GFF3026	0.27	+0.5
3,100,443	-		GFF3026	0.27	+0.5
3,100,443	-		GFF3026	0.27	-0.3
3,100,449	+		GFF3026	0.28	-0.9
3,100,449	+		GFF3026	0.28	+0.9
3,100,457	-		GFF3026	0.29	+0.1
3,100,457	-		GFF3026	0.29	+0.9
3,100,457	-		GFF3026	0.29	+0.6
3,100,476	-		GFF3026	0.32	-0.3
3,100,479	+		GFF3026	0.32	-0.5
3,100,487	+		GFF3026	0.33	-0.9
3,100,487	-		GFF3026	0.33	-0.4
3,100,487	-		GFF3026	0.33	-0.2
3,100,500	+		GFF3026	0.35	-1.6
3,100,505	+		GFF3026	0.35	+1.1
3,100,505	+		GFF3026	0.35	-1.2
3,100,505	+		GFF3026	0.35	-0.8
3,100,505	+		GFF3026	0.35	+0.6
3,100,513	-		GFF3026	0.37	-0.2
3,100,513	-		GFF3026	0.37	-0.8
3,100,513	-		GFF3026	0.37	+2.2
3,100,513	-		GFF3026	0.37	-1.1
3,100,513	-		GFF3026	0.37	+0.1
3,100,513	-		GFF3026	0.37	-0.9
3,100,513	-		GFF3026	0.37	+1.0
3,100,513	-		GFF3026	0.37	+0.2
3,100,513	-		GFF3026	0.37	-1.2
3,100,513	-		GFF3026	0.37	-0.6
3,100,518	-		GFF3026	0.37	-0.6
3,100,537	-		GFF3026	0.40	-0.6
3,100,580	+		GFF3026	0.46	-0.2
3,100,594	-		GFF3026	0.47	-1.3
3,100,659	+		GFF3026	0.56	-1.3
3,100,662	-		GFF3026	0.56	-1.1
3,100,678	+		GFF3026	0.59	-0.9
3,100,686	-		GFF3026	0.60	-0.4
3,100,686	-		GFF3026	0.60	+0.1
3,100,688	+		GFF3026	0.60	+0.4
3,100,688	+		GFF3026	0.60	+0.6
3,100,696	-		GFF3026	0.61	-0.5
3,100,727	+		GFF3026	0.65	-0.3
3,100,732	+		GFF3026	0.66	-0.6
3,100,732	+		GFF3026	0.66	+0.1
3,100,732	+		GFF3026	0.66	-0.2
3,100,732	+		GFF3026	0.66	-0.7
3,100,735	-		GFF3026	0.66	+0.4
3,100,740	-		GFF3026	0.67	+0.8
3,100,740	-		GFF3026	0.67	-0.7
3,100,740	-		GFF3026	0.67	-0.9
3,100,742	+		GFF3026	0.67	-0.4
3,100,742	+		GFF3026	0.67	-1.7
3,100,742	+		GFF3026	0.67	-0.1
3,100,742	+		GFF3026	0.67	-1.3
3,100,742	+		GFF3026	0.67	+0.8
3,100,750	-		GFF3026	0.68	-0.9
3,100,750	-		GFF3026	0.68	+0.3
3,100,750	-		GFF3026	0.68	+0.3
3,100,750	-		GFF3026	0.68	-0.3
3,100,773	+		GFF3026	0.71	-0.9
3,100,781	-		GFF3026	0.72	-1.6
3,100,787	-		GFF3026	0.73	+0.1
3,100,798	-		GFF3026	0.75	+0.7
3,100,798	-		GFF3026	0.75	+0.4
3,100,800	+		GFF3026	0.75	+0.3
3,100,803	+		GFF3026	0.75	+0.3
3,100,808	-		GFF3026	0.76	+1.9
3,100,808	-		GFF3026	0.76	+0.2
3,100,808	-		GFF3026	0.76	+1.1
3,100,808	-		GFF3026	0.76	+1.0
3,100,808	-		GFF3026	0.76	+1.1
3,100,816	+		GFF3026	0.77	-0.4
3,100,834	+		GFF3026	0.80	+1.2
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3,100,925	+				+0.4
3,100,933	-				-1.8
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