Strain Fitness in Sphingobium sp. HT1-2 around GFF2942

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,010,516	-				+0.3
3,010,526	-				+0.0
3,010,586	+				-0.2
3,010,594	-				+0.3
3,010,731	+				+1.6
3,010,740	-				-1.7
3,010,740	-				-1.1
3,010,753	-				+0.3
3,010,766	-				-0.4
3,010,767	+				-0.9
3,010,780	+				+2.5
3,010,819	-		GFF2940	0.11	+2.1
3,010,827	+		GFF2940	0.16	-1.1
3,010,833	+		GFF2940	0.19	+1.2
3,010,833	+		GFF2940	0.19	-1.3
3,010,833	+		GFF2940	0.19	-0.5
3,010,840	-		GFF2940	0.23	-1.8
3,010,841	+		GFF2940	0.23	-1.2
3,010,841	+		GFF2940	0.23	+0.4
3,010,841	-		GFF2940	0.23	+1.1
3,010,841	-		GFF2940	0.23	-0.1
3,010,842	+		GFF2940	0.24	-0.9
3,010,863	+		GFF2940	0.36	-0.7
3,010,923	+		GFF2940	0.69	+0.4
3,010,928	+		GFF2940	0.72	+0.1
3,010,928	+		GFF2940	0.72	-0.3
3,010,958	-		GFF2940	0.88	-0.1
3,010,958	-		GFF2940	0.88	+1.3
3,010,958	-		GFF2940	0.88	-0.4
3,010,958	-		GFF2940	0.88	-0.6
3,010,958	-		GFF2940	0.88	+0.9
3,010,958	-		GFF2940	0.88	-0.7
3,010,958	-		GFF2940	0.88	-1.3
3,010,958	-		GFF2940	0.88	+0.9
3,010,960	+		GFF2940	0.89	-1.0
3,010,960	+		GFF2940	0.89	+0.9
3,010,960	+		GFF2940	0.89	-1.6
3,010,960	+		GFF2940	0.89	-0.4
3,010,960	+		GFF2940	0.89	+0.8
3,010,960	+		GFF2940	0.89	+0.2
3,010,960	+		GFF2940	0.89	+2.1
3,010,968	-				+0.2
3,010,968	-				-2.3
3,010,968	-				-1.6
3,010,968	-				-0.3
3,010,968	-				+1.5
3,010,968	-				-0.6
3,010,968	-				-0.6
3,010,968	-				-1.3
3,010,968	-				-0.8
3,010,968	-				-0.2
3,010,968	-				+2.6
3,010,968	-				-0.8
3,010,968	-				-0.6
3,010,968	-				-0.5
3,010,968	-				-1.3
3,010,968	-				-0.6
3,010,968	-				-0.1
3,010,968	-				+0.2
3,010,968	-				-1.8
3,010,968	-				-0.2
3,010,968	-				-1.4
3,010,980	-				+0.4
3,010,983	-				+0.1
3,010,998	-				-0.1
3,011,024	-		GFF2941	0.20	+0.1
3,011,060	-		GFF2941	0.35	-0.7
3,011,064	+		GFF2941	0.37	+0.9
3,011,067	-		GFF2941	0.38	+0.8
3,011,096	+		GFF2941	0.50	-0.1
3,011,105	+		GFF2941	0.54	-0.2
3,011,118	-		GFF2941	0.60	-0.7
3,011,144	+		GFF2941	0.71	+0.1
3,011,149	+		GFF2941	0.73	+1.2
3,011,152	-		GFF2941	0.74	-1.1
3,011,152	-		GFF2941	0.74	-0.8
3,011,154	+		GFF2941	0.75	-0.2
3,011,168	+		GFF2941	0.81	-0.9
3,011,168	+		GFF2941	0.81	-0.2
3,011,168	+		GFF2941	0.81	+0.9
3,011,168	+		GFF2941	0.81	-0.7
3,011,168	+		GFF2941	0.81	-0.9
3,011,168	+		GFF2941	0.81	-1.9
3,011,171	-		GFF2941	0.82	+0.2
3,011,176	-		GFF2941	0.85	+0.9
3,011,227	-				+0.1
3,011,231	-				-0.2
3,011,244	-				+1.5
3,011,253	+				+0.4
3,011,368	+				-0.4
3,011,405	+				-1.5
3,011,407	+				+0.3
3,011,413	-				+1.2
3,011,418	+				+0.6
3,011,475	-				-0.5
3,011,631	+		GFF2942	0.31	+1.5
3,011,770	-		GFF2942	0.65	+0.1
3,011,782	+		GFF2942	0.68	-1.3
3,011,800	+		GFF2942	0.73	-0.6
3,011,810	+		GFF2942	0.75	-0.1
3,011,810	+		GFF2942	0.75	+0.7
3,011,818	-		GFF2942	0.77	-1.6
3,011,835	+		GFF2942	0.81	-1.1
3,011,845	-		GFF2942	0.84	-0.1
3,011,853	-		GFF2942	0.86	-0.1
3,011,884	+				+1.5
3,011,994	+				+1.1
3,012,002	-				-1.2
3,012,007	-				-1.1
3,012,057	+				-2.1
3,012,093	+				+0.8
3,012,164	-				+0.7
3,012,194	+				+1.1
3,012,261	+		GFF2943	0.13	+0.3
3,012,264	-		GFF2943	0.14	+0.4
3,012,270	-		GFF2943	0.15	+0.7
3,012,270	-		GFF2943	0.15	+0.7
3,012,280	-		GFF2943	0.16	-1.8
3,012,299	+		GFF2943	0.19	-1.0
3,012,306	-		GFF2943	0.20	-0.1
3,012,311	-		GFF2943	0.20	-1.6
3,012,311	-		GFF2943	0.20	+0.7
3,012,325	+		GFF2943	0.22	-0.8
3,012,333	-		GFF2943	0.23	+0.1
3,012,333	-		GFF2943	0.23	-0.1
3,012,333	-		GFF2943	0.23	-1.0
3,012,347	+		GFF2943	0.25	+1.7
3,012,355	-		GFF2943	0.26	+0.7
3,012,355	-		GFF2943	0.26	-0.4
3,012,384	+		GFF2943	0.31	-1.1
3,012,384	+		GFF2943	0.31	+0.8
3,012,392	-		GFF2943	0.32	+0.1
3,012,392	-		GFF2943	0.32	-0.9
3,012,433	+		GFF2943	0.37	-1.7
3,012,433	+		GFF2943	0.37	-0.8
3,012,443	+		GFF2943	0.39	+1.1
3,012,448	-		GFF2943	0.39	+0.5
3,012,450	+		GFF2943	0.40	+1.0
3,012,455	+		GFF2943	0.40	+0.6
3,012,463	-		GFF2943	0.42	+0.4
3,012,463	-		GFF2943	0.42	-1.2
3,012,469	+		GFF2943	0.42	-0.6
3,012,477	-		GFF2943	0.44	+0.2
3,012,477	-		GFF2943	0.44	+1.7
3,012,477	-		GFF2943	0.44	-0.9
3,012,477	-		GFF2943	0.44	+0.4
3,012,477	-		GFF2943	0.44	+0.0
3,012,477	-		GFF2943	0.44	+1.8
3,012,482	-		GFF2943	0.44	-1.4
3,012,511	-		GFF2943	0.48	+0.9
3,012,511	-		GFF2943	0.48	-1.1
3,012,512	-		GFF2943	0.48	+0.8
3,012,551	+		GFF2943	0.54	+0.5
3,012,554	-		GFF2943	0.54	-1.1
3,012,596	+		GFF2943	0.60	+0.7
3,012,596	+		GFF2943	0.60	-0.5
3,012,604	-		GFF2943	0.61	+2.0
3,012,604	-		GFF2943	0.61	+0.0
3,012,604	-		GFF2943	0.61	-0.7
3,012,604	-		GFF2943	0.61	+1.1
3,012,606	-		GFF2943	0.62	-0.6
3,012,635	+		GFF2943	0.66	-0.9
3,012,645	-		GFF2943	0.67	-0.6
3,012,661	-		GFF2943	0.69	+0.7
3,012,679	-		GFF2943	0.72	+0.2
3,012,683	-		GFF2943	0.72	+1.2
3,012,689	-		GFF2943	0.73	+0.9
3,012,689	-		GFF2943	0.73	-0.9
3,012,700	+		GFF2943	0.75	+0.1
3,012,730	+		GFF2943	0.79	+0.7
3,012,730	+		GFF2943	0.79	+0.7
3,012,730	+		GFF2943	0.79	-1.5
3,012,730	+		GFF2943	0.79	+0.4
3,012,730	+		GFF2943	0.79	+0.1
3,012,734	-		GFF2943	0.79	+2.6
3,012,736	-		GFF2943	0.80	+0.4
3,012,738	-		GFF2943	0.80	-0.1
3,012,738	-		GFF2943	0.80	+1.7
3,012,738	-		GFF2943	0.80	+1.0
3,012,738	-		GFF2943	0.80	-0.6
3,012,738	-		GFF2943	0.80	-1.2
3,012,738	-		GFF2943	0.80	+0.2
3,012,738	-		GFF2943	0.80	-0.8
3,012,738	-		GFF2943	0.80	-1.0
3,012,743	-		GFF2943	0.81	-0.2
3,012,745	+		GFF2943	0.81	-1.4
3,012,745	+		GFF2943	0.81	-1.2
3,012,757	+		GFF2943	0.83	+0.9
3,012,763	-		GFF2943	0.83	+0.1
3,012,763	-		GFF2943	0.83	+0.0
3,012,763	-		GFF2943	0.83	-2.0
3,012,765	-		GFF2943	0.84	-0.6
3,012,804	-		GFF2943	0.89	+1.2
3,012,813	-				-0.3
3,012,848	-				+1.6
3,012,866	+				+1.0
3,012,894	+				+1.7
3,012,899	+				-1.7
3,012,902	-		GFF2944	0.12	-0.3