Strain Fitness in Sphingobium sp. HT1-2 around GFF2925

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,996,944	-		GFF2923	0.80	-0.2
2,996,952	+		GFF2923	0.81	+0.1
2,996,967	-		GFF2923	0.81	+1.9
2,996,980	+		GFF2923	0.82	+0.4
2,996,988	-		GFF2923	0.82	+0.1
2,997,005	+		GFF2923	0.83	-0.5
2,997,013	-		GFF2923	0.83	+1.9
2,997,013	-		GFF2923	0.83	+0.6
2,997,047	-		GFF2923	0.85	+0.4
2,997,091	+		GFF2923	0.87	+3.5
2,997,098	-		GFF2923	0.87	+0.9
2,997,101	+		GFF2923	0.87	-0.6
2,997,122	-		GFF2923	0.88	-0.8
2,997,168	+				-0.4
2,997,168	+				+0.4
2,997,168	+				-0.6
2,997,169	-				+0.1
2,997,176	+				+0.4
2,997,176	-				-0.4
2,997,176	-				+0.9
2,997,249	-				-1.2
2,997,274	-				-1.6
2,997,274	-				-0.5
2,997,274	-				-0.3
2,997,285	-				-0.3
2,997,294	-				+2.7
2,997,294	-				+0.1
2,997,319	+				+0.3
2,997,403	-				-2.0
2,997,413	-				-0.5
2,997,418	+				+0.6
2,997,418	+				-0.3
2,997,418	+				+0.0
2,997,426	-				-1.2
2,997,426	-				-0.4
2,997,431	-				+1.0
2,997,436	-				-1.8
2,997,436	-				-0.5
2,997,436	-				+0.1
2,997,461	+		GFF2924	0.14	+0.6
2,997,461	+		GFF2924	0.14	-0.3
2,997,461	+		GFF2924	0.14	+0.0
2,997,469	-		GFF2924	0.16	-2.7
2,997,469	-		GFF2924	0.16	+1.4
2,997,469	-		GFF2924	0.16	-0.6
2,997,469	-		GFF2924	0.16	-0.4
2,997,469	-		GFF2924	0.16	+0.4
2,997,557	-		GFF2924	0.33	+0.2
2,997,597	+		GFF2924	0.40	+0.7
2,997,597	+		GFF2924	0.40	-0.6
2,997,597	+		GFF2924	0.40	+0.5
2,997,694	+		GFF2924	0.59	-0.6
2,997,707	-		GFF2924	0.61	+1.5
2,997,707	-		GFF2924	0.61	+0.9
2,997,723	-		GFF2924	0.65	+1.5
2,997,737	+		GFF2924	0.67	-1.7
2,997,743	+		GFF2924	0.68	-0.2
2,997,749	-		GFF2924	0.70	-1.4
2,997,751	-		GFF2924	0.70	+0.3
2,997,751	-		GFF2924	0.70	-0.7
2,997,753	-		GFF2924	0.70	+0.6
2,997,774	+		GFF2924	0.74	-0.6
2,997,799	-		GFF2924	0.79	+0.4
2,997,811	+		GFF2924	0.82	+0.7
2,997,819	-		GFF2924	0.83	-1.1
2,997,829	-		GFF2924	0.85	+1.9
2,997,830	+		GFF2924	0.85	+0.9
2,997,842	+		GFF2924	0.87	+2.0
2,997,850	-		GFF2924	0.89	-1.6
2,997,850	-		GFF2924	0.89	+0.7
2,997,850	-		GFF2924	0.89	+0.2
2,997,856	-				+0.5
2,997,860	+				-0.1
2,997,862	+				+0.1
2,997,867	+				-1.0
2,997,958	-				-0.1
2,997,994	+		GFF2925	0.17	-0.3
2,998,161	+		GFF2925	0.52	-1.4
2,998,161	+		GFF2925	0.52	-0.3
2,998,169	-		GFF2925	0.54	-0.9
2,998,213	-		GFF2925	0.64	+0.9
2,998,218	-		GFF2925	0.65	-0.2
2,998,232	+		GFF2925	0.68	-1.3
2,998,235	-		GFF2925	0.68	-1.4
2,998,239	+		GFF2925	0.69	-1.0
2,998,240	-		GFF2925	0.69	-0.6
2,998,295	+		GFF2925	0.81	+0.9
2,998,300	+		GFF2925	0.82	-1.0
2,998,350	-				-0.2
2,998,371	+				+0.6
2,998,411	+				+0.3
2,998,411	+				-0.3
2,998,411	+				-0.6
2,998,419	-				+0.9
2,998,419	-				-1.2
2,998,419	-				+1.4
2,998,436	-				+0.4
2,998,448	+				+0.4
2,998,448	+				-0.8
2,998,448	+				-1.6
2,998,448	+				-0.7
2,998,448	+				-0.6
2,998,448	+				+0.8
2,998,448	+				-0.9
2,998,456	-				+0.5
2,998,456	-				+0.7
2,998,456	-				-0.6
2,998,456	-				+0.5
2,998,456	-				-0.2
2,998,456	-				+0.4
2,998,456	-				-2.1
2,998,466	-				-0.6
2,998,474	+				-0.5
2,998,486	-				-0.6
2,998,568	+				-1.5
2,998,568	+				+1.9
2,998,568	+				-0.6
2,998,568	+				+3.3
2,998,573	+				-1.4
2,998,573	+				-0.8
2,998,573	+				-0.8
2,998,573	+				-0.1
2,998,573	+				+1.2
2,998,576	-				-2.5
2,998,576	-				-1.0
2,998,576	-				+0.9
2,998,576	-				-0.5
2,998,576	-				-0.9
2,998,576	-				-1.1
2,998,581	-				-0.3
2,998,581	-				-0.4
2,998,581	-				-0.3
2,998,581	-				+1.0
2,998,581	-				-0.2
2,998,583	+				-0.8
2,998,601	-				-0.5
2,998,601	-				-0.8
2,998,601	-				+1.9
2,998,601	-				-1.2
2,998,601	-				-0.9
2,998,604	+				-0.3
2,998,617	+		GFF2926	0.10	-1.3
2,998,635	+		GFF2926	0.11	-2.1
2,998,640	+		GFF2926	0.11	-2.0
2,998,640	+		GFF2926	0.11	-1.5
2,998,640	+		GFF2926	0.11	-1.0
2,998,648	-		GFF2926	0.12	+0.5
2,998,648	-		GFF2926	0.12	-1.0
2,998,679	+		GFF2926	0.13	+0.3
2,998,679	+		GFF2926	0.13	+1.8
2,998,687	+		GFF2926	0.13	-1.5
2,998,687	-		GFF2926	0.13	+0.4
2,998,689	+		GFF2926	0.14	+1.0
2,998,689	+		GFF2926	0.14	+0.9
2,998,689	+		GFF2926	0.14	+1.2
2,998,694	+		GFF2926	0.14	-0.0
2,998,697	-		GFF2926	0.14	-0.7
2,998,697	-		GFF2926	0.14	-0.1
2,998,734	+		GFF2926	0.15	+1.3
2,998,744	-		GFF2926	0.16	-0.2
2,998,744	-		GFF2926	0.16	-1.4
2,998,749	-		GFF2926	0.16	-2.8
2,998,753	+		GFF2926	0.16	-0.6
2,998,787	-		GFF2926	0.18	+0.7
2,998,806	+		GFF2926	0.19	-0.3
2,998,812	+		GFF2926	0.19	+0.2
2,998,827	+		GFF2926	0.20	-0.9
2,998,832	+		GFF2926	0.20	+0.4
2,998,845	-		GFF2926	0.20	+0.5
2,998,862	+		GFF2926	0.21	+1.4
2,998,862	+		GFF2926	0.21	+0.8
2,998,862	+		GFF2926	0.21	-0.9
2,998,875	-		GFF2926	0.22	-0.6
2,998,883	+		GFF2926	0.22	+0.5
2,998,903	+		GFF2926	0.23	-1.2
2,998,929	-		GFF2926	0.24	-2.2
2,998,939	+		GFF2926	0.24	+0.2
2,998,945	+		GFF2926	0.25	-0.1
2,998,967	+		GFF2926	0.26	+0.7
2,998,970	+		GFF2926	0.26	-0.3
2,998,970	+		GFF2926	0.26	-0.5
2,998,970	+		GFF2926	0.26	-1.3
2,998,978	-		GFF2926	0.26	+0.6
2,998,978	-		GFF2926	0.26	-0.2
2,998,978	-		GFF2926	0.26	+1.9
2,998,978	-		GFF2926	0.26	-0.2
2,998,978	-		GFF2926	0.26	+0.8
2,998,978	-		GFF2926	0.26	+0.1
2,998,978	-		GFF2926	0.26	-1.2
2,998,978	-		GFF2926	0.26	-0.6
2,999,026	-		GFF2926	0.28	-0.8
2,999,056	-		GFF2926	0.30	+0.7
2,999,056	-		GFF2926	0.30	+0.8
2,999,059	+		GFF2926	0.30	+0.4
2,999,067	-		GFF2926	0.30	-1.0
2,999,067	-		GFF2926	0.30	+1.2
2,999,067	-		GFF2926	0.30	+0.1
2,999,090	+		GFF2926	0.31	+1.0
2,999,090	+		GFF2926	0.31	-0.1
2,999,095	+		GFF2926	0.31	+0.2
2,999,095	+		GFF2926	0.31	-1.5
2,999,095	+		GFF2926	0.31	-2.0
2,999,103	-		GFF2926	0.32	-0.9
2,999,120	+		GFF2926	0.32	-0.4
2,999,120	+		GFF2926	0.32	+0.2
2,999,120	+		GFF2926	0.32	+0.1
2,999,120	+		GFF2926	0.32	+0.6
2,999,120	+		GFF2926	0.32	-0.4
2,999,120	+		GFF2926	0.32	+0.3
2,999,120	+		GFF2926	0.32	-0.6
2,999,120	+		GFF2926	0.32	-2.0
2,999,120	+		GFF2926	0.32	-1.9
2,999,128	-		GFF2926	0.33	+1.7
2,999,128	-		GFF2926	0.33	-1.0
2,999,128	-		GFF2926	0.33	+1.1
2,999,128	-		GFF2926	0.33	-0.4
2,999,128	-		GFF2926	0.33	+1.2
2,999,128	-		GFF2926	0.33	-1.1
2,999,128	-		GFF2926	0.33	+1.0
2,999,128	-		GFF2926	0.33	+2.2
2,999,128	-		GFF2926	0.33	+0.7
2,999,128	-		GFF2926	0.33	+1.1
2,999,128	-		GFF2926	0.33	-2.0
2,999,128	-		GFF2926	0.33	-0.2
2,999,128	-		GFF2926	0.33	+1.9
2,999,128	-		GFF2926	0.33	-1.4
2,999,128	-		GFF2926	0.33	+0.9
2,999,128	-		GFF2926	0.33	+0.9
2,999,128	-		GFF2926	0.33	-1.6
2,999,128	-		GFF2926	0.33	-0.9
2,999,128	-		GFF2926	0.33	-1.4
2,999,128	-		GFF2926	0.33	-1.6
2,999,128	-		GFF2926	0.33	+3.1
2,999,133	-		GFF2926	0.33	+0.2
2,999,168	+		GFF2926	0.34	-0.3
2,999,192	-		GFF2926	0.35	+0.1
2,999,197	+		GFF2926	0.36	-0.7
2,999,197	+		GFF2926	0.36	-0.5
2,999,197	+		GFF2926	0.36	-0.7
2,999,205	-		GFF2926	0.36	-0.2
2,999,205	-		GFF2926	0.36	-1.0
2,999,205	-		GFF2926	0.36	+0.7
2,999,258	+		GFF2926	0.38	+1.8
2,999,318	-		GFF2926	0.41	-1.2
2,999,326	+		GFF2926	0.41	+0.4
2,999,348	-		GFF2926	0.42	+0.4
2,999,358	-		GFF2926	0.43	-0.3
2,999,358	-		GFF2926	0.43	+0.2
2,999,363	+		GFF2926	0.43	-0.4
2,999,364	-		GFF2926	0.43	+0.5
2,999,364	-		GFF2926	0.43	-1.2
2,999,368	+		GFF2926	0.43	+0.9
2,999,371	-		GFF2926	0.43	+0.1
2,999,371	-		GFF2926	0.43	+1.9
2,999,371	-		GFF2926	0.43	-1.5
2,999,371	-		GFF2926	0.43	-0.1
2,999,371	-		GFF2926	0.43	-0.1