Strain Fitness in Sphingobium sp. HT1-2 around GFF2835

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,881,985	+				-2.3
2,882,000	+		GFF2834	0.11	-0.7
2,882,000	+		GFF2834	0.11	+0.0
2,882,000	+		GFF2834	0.11	-0.4
2,882,000	+		GFF2834	0.11	+0.1
2,882,000	-		GFF2834	0.11	-0.5
2,882,006	+		GFF2834	0.12	-0.5
2,882,008	-		GFF2834	0.12	-0.1
2,882,008	-		GFF2834	0.12	-2.2
2,882,027	+		GFF2834	0.14	-0.4
2,882,027	+		GFF2834	0.14	-1.5
2,882,030	+		GFF2834	0.14	+0.3
2,882,030	+		GFF2834	0.14	-0.9
2,882,032	+		GFF2834	0.14	-0.1
2,882,032	+		GFF2834	0.14	-0.3
2,882,032	+		GFF2834	0.14	-1.0
2,882,038	-		GFF2834	0.15	-0.4
2,882,038	-		GFF2834	0.15	+0.7
2,882,040	-		GFF2834	0.15	-1.4
2,882,040	-		GFF2834	0.15	+0.3
2,882,040	-		GFF2834	0.15	-0.8
2,882,040	-		GFF2834	0.15	-0.7
2,882,040	-		GFF2834	0.15	+0.7
2,882,075	+		GFF2834	0.18	-0.2
2,882,075	+		GFF2834	0.18	-1.1
2,882,077	+		GFF2834	0.19	-0.3
2,882,083	-		GFF2834	0.19	-0.6
2,882,083	-		GFF2834	0.19	-0.3
2,882,085	-		GFF2834	0.19	+0.8
2,882,091	-		GFF2834	0.20	-1.1
2,882,099	-		GFF2834	0.21	-1.1
2,882,099	-		GFF2834	0.21	-0.8
2,882,128	+		GFF2834	0.24	+1.4
2,882,144	-		GFF2834	0.25	-1.1
2,882,146	+		GFF2834	0.25	-1.1
2,882,166	+		GFF2834	0.27	-1.3
2,882,166	+		GFF2834	0.27	-0.6
2,882,166	+		GFF2834	0.27	+1.4
2,882,166	+		GFF2834	0.27	-0.6
2,882,166	+		GFF2834	0.27	-1.0
2,882,166	+		GFF2834	0.27	-0.2
2,882,166	-		GFF2834	0.27	-1.9
2,882,171	+		GFF2834	0.28	-1.3
2,882,171	+		GFF2834	0.28	-0.3
2,882,171	+		GFF2834	0.28	-2.1
2,882,171	+		GFF2834	0.28	-1.3
2,882,174	-		GFF2834	0.28	+1.5
2,882,174	-		GFF2834	0.28	-0.1
2,882,179	-		GFF2834	0.29	-1.0
2,882,179	-		GFF2834	0.29	+0.6
2,882,179	-		GFF2834	0.29	-0.9
2,882,179	-		GFF2834	0.29	-1.3
2,882,188	+		GFF2834	0.29	-1.2
2,882,188	+		GFF2834	0.29	-0.6
2,882,196	+		GFF2834	0.30	-1.0
2,882,196	-		GFF2834	0.30	-0.7
2,882,196	-		GFF2834	0.30	-1.0
2,882,196	-		GFF2834	0.30	+0.5
2,882,204	-		GFF2834	0.31	-1.3
2,882,204	-		GFF2834	0.31	-1.1
2,882,206	+		GFF2834	0.31	-0.3
2,882,206	+		GFF2834	0.31	-2.2
2,882,206	+		GFF2834	0.31	+0.4
2,882,206	+		GFF2834	0.31	-1.5
2,882,206	+		GFF2834	0.31	-0.8
2,882,214	-		GFF2834	0.32	-0.7
2,882,216	+		GFF2834	0.32	+2.2
2,882,216	+		GFF2834	0.32	-0.4
2,882,216	+		GFF2834	0.32	-1.1
2,882,224	-		GFF2834	0.33	+0.9
2,882,224	-		GFF2834	0.33	-1.9
2,882,224	-		GFF2834	0.33	-0.4
2,882,224	-		GFF2834	0.33	-0.8
2,882,260	-		GFF2834	0.36	-0.4
2,882,274	+		GFF2834	0.38	-1.9
2,882,287	-		GFF2834	0.39	+0.5
2,882,311	+		GFF2834	0.41	-0.5
2,882,331	-		GFF2834	0.43	+0.1
2,882,361	+		GFF2834	0.46	+0.6
2,882,371	-		GFF2834	0.47	-0.7
2,882,376	-		GFF2834	0.48	+0.6
2,882,378	+		GFF2834	0.48	+0.6
2,882,378	+		GFF2834	0.48	-1.1
2,882,381	-		GFF2834	0.48	-1.6
2,882,381	-		GFF2834	0.48	-1.0
2,882,425	-		GFF2834	0.53	-0.6
2,882,454	-		GFF2834	0.55	-1.7
2,882,454	-		GFF2834	0.55	-0.8
2,882,509	+		GFF2834	0.61	+0.5
2,882,509	+		GFF2834	0.61	-1.5
2,882,509	+		GFF2834	0.61	-0.6
2,882,517	-		GFF2834	0.62	-0.5
2,882,517	-		GFF2834	0.62	-1.2
2,882,517	-		GFF2834	0.62	+1.0
2,882,517	-		GFF2834	0.62	+1.0
2,882,517	-		GFF2834	0.62	+1.0
2,882,527	-		GFF2834	0.63	-1.9
2,882,527	-		GFF2834	0.63	-0.6
2,882,531	+		GFF2834	0.63	-1.3
2,882,534	-		GFF2834	0.63	-0.4
2,882,536	+		GFF2834	0.63	+1.3
2,882,539	-		GFF2834	0.64	-1.4
2,882,554	+		GFF2834	0.65	-0.2
2,882,554	+		GFF2834	0.65	-1.6
2,882,554	+		GFF2834	0.65	-0.1
2,882,562	-		GFF2834	0.66	-1.6
2,882,562	-		GFF2834	0.66	-1.3
2,882,584	-		GFF2834	0.68	+0.2
2,882,635	+		GFF2834	0.73	+1.3
2,882,656	+		GFF2834	0.75	+0.7
2,882,656	+		GFF2834	0.75	-1.3
2,882,656	+		GFF2834	0.75	-1.4
2,882,656	+		GFF2834	0.75	-2.5
2,882,664	-		GFF2834	0.76	-1.7
2,882,664	-		GFF2834	0.76	-0.4
2,882,730	-		GFF2834	0.82	-1.2
2,882,732	+		GFF2834	0.83	-1.5
2,882,735	-		GFF2834	0.83	-1.0
2,882,755	+		GFF2834	0.85	-1.5
2,882,775	+		GFF2834	0.87	-1.1
2,882,775	+		GFF2834	0.87	-1.3
2,882,775	+		GFF2834	0.87	-0.1
2,882,783	-		GFF2834	0.88	-0.5
2,882,783	-		GFF2834	0.88	-0.2
2,882,783	-		GFF2834	0.88	+0.1
2,882,790	+		GFF2834	0.88	-0.6
2,882,798	-		GFF2834	0.89	+0.3
2,882,798	-		GFF2834	0.89	+1.3
2,882,798	-		GFF2834	0.89	-1.5
2,882,802	-		GFF2834	0.89	-1.3
2,882,811	+				-0.4
2,882,811	+				-1.1
2,882,817	+				-0.6
2,882,817	+				+0.9
2,882,817	+				-1.9
2,882,820	-				-1.5
2,882,825	-				-2.7
2,882,825	-				+0.1
2,882,825	-				+0.2
2,882,825	-				-1.3
2,882,825	-				-1.6
2,882,851	-				+0.0
2,882,865	-				-0.7
2,882,871	-				-0.3
2,882,873	+				+0.0
2,882,878	+				-2.9
2,882,886	-				-0.9
2,882,904	+				+0.1
2,882,904	+				-1.3
2,882,904	+				-1.4
2,882,904	+				+0.5
2,882,904	+				-0.4
2,882,912	-				+0.1
2,882,912	-				-0.6
2,882,912	-				-0.4
2,882,912	-				-1.3
2,882,912	-				+0.3
2,882,912	-				-1.7
2,882,912	-				+0.3
2,882,912	-				-1.1
2,882,917	-				+0.5
2,882,931	+				-0.3
2,882,936	+				+0.4
2,882,937	+				+0.7
2,882,937	+				+0.1
2,882,937	+				-1.1
2,882,937	+				-0.6
2,882,937	+				-0.0
2,882,937	+				+0.3
2,882,937	+				-0.4
2,882,937	+				-0.6
2,882,944	-				-1.6
2,882,945	+				-0.6
2,882,945	-				-1.6
2,882,945	-				+0.7
2,882,945	-				-1.1
2,882,945	-				-0.3
2,882,945	-				+0.5
2,882,947	+				+0.3
2,882,947	+				+0.6
2,882,947	+				+0.4
2,882,947	+				-1.2
2,882,955	-				+0.3
2,882,960	+				+0.6
2,882,974	+				-1.5
2,882,982	-				+0.3
2,882,982	-				+1.0
2,883,019	+				-0.3
2,883,019	+				+1.7
2,883,020	-				-1.3
2,883,025	-		GFF2835	0.10	-1.2
2,883,027	-		GFF2835	0.11	-0.5
2,883,027	-		GFF2835	0.11	-1.4
2,883,027	-		GFF2835	0.11	-0.2
2,883,027	-		GFF2835	0.11	+1.3
2,883,027	-		GFF2835	0.11	-0.1
2,883,036	+		GFF2835	0.13	+0.9
2,883,036	+		GFF2835	0.13	+0.5
2,883,036	+		GFF2835	0.13	-0.7
2,883,044	-		GFF2835	0.15	-1.4
2,883,044	-		GFF2835	0.15	+0.2
2,883,044	-		GFF2835	0.15	-0.6
2,883,054	-		GFF2835	0.17	-0.5
2,883,092	-		GFF2835	0.27	-0.3
2,883,102	-		GFF2835	0.30	-1.7
2,883,123	-		GFF2835	0.35	-1.1
2,883,127	-		GFF2835	0.36	-1.1
2,883,134	+		GFF2835	0.38	-0.5
2,883,194	+		GFF2835	0.53	-0.1
2,883,194	+		GFF2835	0.53	-0.1
2,883,194	+		GFF2835	0.53	+0.7
2,883,194	+		GFF2835	0.53	+0.7
2,883,194	+		GFF2835	0.53	-0.3
2,883,194	+		GFF2835	0.53	+0.3
2,883,194	+		GFF2835	0.53	-1.1
2,883,194	+		GFF2835	0.53	+0.5
2,883,194	+		GFF2835	0.53	+0.5
2,883,202	-		GFF2835	0.55	+0.1
2,883,202	-		GFF2835	0.55	+0.1
2,883,202	-		GFF2835	0.55	-0.4
2,883,202	-		GFF2835	0.55	-0.8
2,883,202	-		GFF2835	0.55	-0.5
2,883,202	-		GFF2835	0.55	-0.3
2,883,202	-		GFF2835	0.55	-1.5
2,883,204	+		GFF2835	0.55	+0.3
2,883,226	-		GFF2835	0.61	+0.2
2,883,228	+		GFF2835	0.61	+0.8
2,883,233	+		GFF2835	0.63	-0.5
2,883,233	+		GFF2835	0.63	-1.6
2,883,233	+		GFF2835	0.63	+1.3
2,883,233	+		GFF2835	0.63	-0.3
2,883,233	+		GFF2835	0.63	-0.8
2,883,233	+		GFF2835	0.63	-1.1
2,883,233	+		GFF2835	0.63	-0.4
2,883,236	-		GFF2835	0.63	-0.6
2,883,236	-		GFF2835	0.63	-0.1
2,883,236	-		GFF2835	0.63	+2.2
2,883,241	-		GFF2835	0.65	-1.3
2,883,241	-		GFF2835	0.65	-0.2
2,883,241	-		GFF2835	0.65	-0.4
2,883,241	-		GFF2835	0.65	+0.1
2,883,241	-		GFF2835	0.65	+0.4
2,883,241	-		GFF2835	0.65	-1.4
2,883,241	-		GFF2835	0.65	-0.2
2,883,241	-		GFF2835	0.65	-0.5
2,883,241	-		GFF2835	0.65	-0.7
2,883,241	-		GFF2835	0.65	+1.5
2,883,243	+		GFF2835	0.65	-0.2
2,883,243	+		GFF2835	0.65	-1.2
2,883,243	+		GFF2835	0.65	-1.5
2,883,243	+		GFF2835	0.65	-0.9
2,883,243	+		GFF2835	0.65	-0.1
2,883,243	+		GFF2835	0.65	-0.2
2,883,243	+		GFF2835	0.65	-0.5
2,883,243	+		GFF2835	0.65	-1.6
2,883,243	+		GFF2835	0.65	-0.2
2,883,243	+		GFF2835	0.65	-1.1
2,883,243	+		GFF2835	0.65	-0.6
2,883,243	+		GFF2835	0.65	+0.5
2,883,243	+		GFF2835	0.65	-1.1
2,883,243	+		GFF2835	0.65	-0.3
2,883,246	-		GFF2835	0.66	+0.7
2,883,251	-		GFF2835	0.67	-2.0
2,883,251	-		GFF2835	0.67	+0.9
2,883,251	-		GFF2835	0.67	-0.1
2,883,251	-		GFF2835	0.67	+1.4
2,883,251	-		GFF2835	0.67	+0.9
2,883,251	-		GFF2835	0.67	+0.6
2,883,286	+		GFF2835	0.76	-0.3
2,883,286	+		GFF2835	0.76	-1.1
2,883,286	+		GFF2835	0.76	+1.7
2,883,286	+		GFF2835	0.76	-0.7
2,883,286	+		GFF2835	0.76	-1.6
2,883,286	+		GFF2835	0.76	-0.3
2,883,294	-		GFF2835	0.78	-0.7
2,883,294	-		GFF2835	0.78	+0.3
2,883,294	-		GFF2835	0.78	-0.4
2,883,298	-		GFF2835	0.79	-1.8
2,883,300	+		GFF2835	0.80	-0.7
2,883,300	+		GFF2835	0.80	-1.4
2,883,300	+		GFF2835	0.80	-0.5
2,883,300	+		GFF2835	0.80	-2.2
2,883,300	+		GFF2835	0.80	-0.7
2,883,300	+		GFF2835	0.80	-1.2
2,883,303	-		GFF2835	0.80	-2.5
2,883,308	-		GFF2835	0.82	-0.5
2,883,308	-		GFF2835	0.82	-0.1
2,883,308	-		GFF2835	0.82	-2.0
2,883,308	-		GFF2835	0.82	+0.9
2,883,308	-		GFF2835	0.82	-1.1
2,883,308	-		GFF2835	0.82	-0.4
2,883,308	-		GFF2835	0.82	-0.5
2,883,308	-		GFF2835	0.82	-1.7
2,883,308	-		GFF2835	0.82	-1.3
2,883,308	-		GFF2835	0.82	+0.8
2,883,308	-		GFF2835	0.82	-1.0
2,883,308	-		GFF2835	0.82	-1.3
2,883,308	-		GFF2835	0.82	+0.5
2,883,312	+		GFF2835	0.83	-0.4
2,883,318	-		GFF2835	0.84	-1.4
2,883,318	-		GFF2835	0.84	-0.4
2,883,332	+		GFF2835	0.88	-1.4
2,883,338	+		GFF2835	0.89	-1.3
2,883,338	+		GFF2835	0.89	-1.4
2,883,338	+		GFF2835	0.89	-1.0
2,883,338	+		GFF2835	0.89	+0.5
2,883,338	+		GFF2835	0.89	-0.5
2,883,338	+		GFF2835	0.89	-2.9
2,883,338	+		GFF2835	0.89	-0.3
2,883,338	+		GFF2835	0.89	+0.2
2,883,341	-				-1.2
2,883,345	-				+1.2
2,883,346	-				-1.1
2,883,346	-				+0.4
2,883,350	+				-1.3
2,883,358	-				+0.1
2,883,358	-				+0.0
2,883,358	-				-0.8
2,883,374	+				-0.8
2,883,374	+				-1.0
2,883,382	-				+0.5
2,883,412	-				-0.3
2,883,417	+				-0.6
2,883,424	+				-0.6
2,883,424	-				-1.2
2,883,431	+				-0.4
2,883,489	-				+0.2
2,883,496	-				+0.5
2,883,500	+				-0.7
2,883,508	-				+1.7
2,883,542	-				-0.8
2,883,576	+				+0.7
2,883,581	+				-0.6
2,883,584	-				-0.4
2,883,590	+				-0.0
2,883,600	-				-0.3
2,883,617	+				-0.5
2,883,632	-				-0.2
2,883,670	+				-1.1
2,883,670	+				+0.2
2,883,676	+				-0.5
2,883,678	-				-0.9
2,883,684	-				-0.8
2,883,701	-				+1.2
2,883,711	-				-1.5
2,883,711	-				-1.7
2,883,728	+				-2.0
2,883,736	-				-0.4
2,883,751	-				-0.3
2,883,761	+				-0.5
2,883,761	+				-0.4
2,883,805	+		GFF2836	0.12	-0.4
2,883,813	-		GFF2836	0.12	-0.5
2,883,813	-		GFF2836	0.12	+1.1
2,883,813	-		GFF2836	0.12	-0.7
2,883,813	-		GFF2836	0.12	+0.7
2,883,813	-		GFF2836	0.12	-1.1
2,883,813	-		GFF2836	0.12	-0.2
2,883,813	-		GFF2836	0.12	+0.9
2,883,813	-		GFF2836	0.12	+0.2
2,883,815	+		GFF2836	0.12	-0.2
2,883,815	+		GFF2836	0.12	-0.3
2,883,823	-		GFF2836	0.12	-0.1
2,883,860	-		GFF2836	0.14	+0.3
2,883,871	+		GFF2836	0.14	-1.1
2,883,871	+		GFF2836	0.14	-1.1
2,883,879	-		GFF2836	0.14	+0.1
2,883,879	-		GFF2836	0.14	+0.6
2,883,879	-		GFF2836	0.14	+0.2
2,883,901	-		GFF2836	0.15	-0.5
2,883,901	-		GFF2836	0.15	-2.3
2,883,902	+		GFF2836	0.15	+0.3
2,883,902	+		GFF2836	0.15	-0.1
2,883,902	+		GFF2836	0.15	-1.3
2,883,922	+		GFF2836	0.16	-2.3
2,883,923	+		GFF2836	0.16	-0.3
2,883,931	-		GFF2836	0.16	-2.6
2,883,940	-		GFF2836	0.16	-2.5
2,883,958	-		GFF2836	0.17	-0.7
2,883,961	+		GFF2836	0.17	+1.7
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2,883,963	-		GFF2836	0.17	+0.3
2,883,963	-		GFF2836	0.17	+0.5
2,883,969	-		GFF2836	0.17	-1.1
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2,883,984	-		GFF2836	0.18	-1.9
2,883,988	+		GFF2836	0.18	+0.6
2,883,996	-		GFF2836	0.18	-0.6
2,883,996	-		GFF2836	0.18	-1.8
2,883,996	-		GFF2836	0.18	-1.1
2,883,996	-		GFF2836	0.18	-1.6
2,883,996	-		GFF2836	0.18	-1.6
2,883,996	-		GFF2836	0.18	-0.8
2,883,996	-		GFF2836	0.18	+0.0
2,884,009	-		GFF2836	0.19	-1.6
2,884,018	+		GFF2836	0.19	-1.2
2,884,035	+		GFF2836	0.20	-0.3
2,884,070	+		GFF2836	0.21	-1.1
2,884,136	+		GFF2836	0.23	-1.2
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2,884,144	-		GFF2836	0.24	-1.3
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2,884,183	-		GFF2836	0.25	-0.2
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2,884,190	+		GFF2836	0.25	-0.4
2,884,193	+		GFF2836	0.25	-1.1
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2,884,216	-		GFF2836	0.26	-1.4
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2,884,255	-		GFF2836	0.28	-1.1
2,884,264	+		GFF2836	0.28	-0.8
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2,884,329	+		GFF2836	0.30	-1.1
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2,884,329	+		GFF2836	0.30	-1.1
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2,884,329	+		GFF2836	0.30	-0.1
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2,884,329	+		GFF2836	0.30	+0.2
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2,884,329	+		GFF2836	0.30	-0.0
2,884,329	+		GFF2836	0.30	-1.2
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2,884,329	+		GFF2836	0.30	-1.1
2,884,329	+		GFF2836	0.30	+0.1
2,884,329	+		GFF2836	0.30	+1.0
2,884,337	-		GFF2836	0.31	-0.9
2,884,337	-		GFF2836	0.31	-0.8
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2,884,337	-		GFF2836	0.31	-0.5
2,884,337	-		GFF2836	0.31	-1.8
2,884,337	-		GFF2836	0.31	-0.2
2,884,337	-		GFF2836	0.31	+0.1
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2,884,337	-		GFF2836	0.31	-0.3
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2,884,337	-		GFF2836	0.31	-1.9
2,884,337	-		GFF2836	0.31	-1.0
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2,884,337	-		GFF2836	0.31	-1.3
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2,884,337	-		GFF2836	0.31	-0.5
2,884,337	-		GFF2836	0.31	-0.6
2,884,352	-		GFF2836	0.31	+0.2
2,884,364	+		GFF2836	0.32	+1.0
2,884,375	+		GFF2836	0.32	-0.8