Strain Fitness in Sphingobium sp. HT1-2 around GFF2734

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,758,963	+				-0.7
2,758,981	-				+1.1
2,759,051	+				-0.6
2,759,061	+				-1.2
2,759,069	-				+0.6
2,759,087	+				-1.6
2,759,095	+				+0.0
2,759,095	+				-1.1
2,759,095	+				+0.3
2,759,095	+				-0.7
2,759,095	+				-1.3
2,759,095	+				-0.5
2,759,095	+				-1.1
2,759,095	-				-0.1
2,759,110	+				-1.0
2,759,110	+				-0.5
2,759,110	+				-0.8
2,759,110	+				-0.1
2,759,110	+				+0.5
2,759,110	+				-2.2
2,759,110	+				-1.8
2,759,118	+				-0.2
2,759,118	-				-0.4
2,759,118	-				-0.5
2,759,118	-				+1.0
2,759,122	+				-1.2
2,759,124	+				-1.3
2,759,130	-				-0.9
2,759,132	+				+1.5
2,759,132	+				+0.7
2,759,132	-				-1.6
2,759,143	+				+0.7
2,759,145	-				-1.0
2,759,146	-				-0.5
2,759,150	-				-0.6
2,759,151	-				+1.3
2,759,160	+				+0.4
2,759,160	+				-2.1
2,759,160	+				-0.8
2,759,160	+				-1.0
2,759,160	+				+1.3
2,759,163	-				-0.6
2,759,168	-				+0.1
2,759,168	-				+0.8
2,759,168	-				+0.2
2,759,171	+		GFF2733	0.10	-1.6
2,759,171	+		GFF2733	0.10	-0.8
2,759,171	+		GFF2733	0.10	-0.3
2,759,171	+		GFF2733	0.10	+0.4
2,759,171	+		GFF2733	0.10	-1.7
2,759,176	+		GFF2733	0.11	-0.6
2,759,176	+		GFF2733	0.11	-0.9
2,759,176	+		GFF2733	0.11	-1.3
2,759,179	-		GFF2733	0.11	-0.5
2,759,179	-		GFF2733	0.11	-0.8
2,759,189	-		GFF2733	0.12	+0.7
2,759,211	+		GFF2733	0.16	-0.1
2,759,238	+		GFF2733	0.19	-0.6
2,759,238	+		GFF2733	0.19	-0.9
2,759,239	-		GFF2733	0.19	-1.1
2,759,241	+		GFF2733	0.20	+0.7
2,759,246	+		GFF2733	0.20	+0.9
2,759,246	-		GFF2733	0.20	-0.5
2,759,249	-		GFF2733	0.21	-0.2
2,759,249	-		GFF2733	0.21	-1.4
2,759,249	-		GFF2733	0.21	-1.6
2,759,249	-		GFF2733	0.21	-1.3
2,759,251	+		GFF2733	0.21	-0.3
2,759,254	-		GFF2733	0.21	-1.7
2,759,272	+		GFF2733	0.24	-1.1
2,759,276	+		GFF2733	0.24	+0.6
2,759,276	+		GFF2733	0.24	-0.3
2,759,284	-		GFF2733	0.26	-0.3
2,759,296	+		GFF2733	0.27	-1.7
2,759,308	+		GFF2733	0.29	-2.1
2,759,314	+		GFF2733	0.30	+0.1
2,759,316	-		GFF2733	0.30	+0.6
2,759,316	-		GFF2733	0.30	+0.3
2,759,316	-		GFF2733	0.30	-1.9
2,759,317	-		GFF2733	0.30	-0.8
2,759,322	-		GFF2733	0.31	-1.3
2,759,322	-		GFF2733	0.31	-0.8
2,759,322	-		GFF2733	0.31	-0.9
2,759,368	+		GFF2733	0.37	-0.1
2,759,368	-		GFF2733	0.37	-0.7
2,759,369	+		GFF2733	0.37	+0.2
2,759,377	-		GFF2733	0.38	-0.3
2,759,425	+		GFF2733	0.45	-0.9
2,759,453	+		GFF2733	0.49	-0.7
2,759,484	+		GFF2733	0.53	+0.6
2,759,497	+		GFF2733	0.55	-0.5
2,759,505	-		GFF2733	0.56	-0.5
2,759,510	-		GFF2733	0.57	+0.1
2,759,518	+		GFF2733	0.58	-2.7
2,759,526	-		GFF2733	0.59	-0.6
2,759,549	-		GFF2733	0.62	-0.4
2,759,551	+		GFF2733	0.62	-1.4
2,759,558	+		GFF2733	0.63	-0.5
2,759,559	-		GFF2733	0.63	-0.5
2,759,559	-		GFF2733	0.63	-0.6
2,759,594	+		GFF2733	0.68	-0.8
2,759,606	+		GFF2733	0.70	+1.1
2,759,612	-		GFF2733	0.71	-0.1
2,759,628	+		GFF2733	0.73	+1.0
2,759,651	+		GFF2733	0.76	+0.4
2,759,656	+		GFF2733	0.77	+1.1
2,759,669	-		GFF2733	0.78	-0.9
2,759,747	+		GFF2733	0.89	-1.3
2,759,763	+				-0.4
2,759,765	-				-0.5
2,759,771	-				-0.8
2,759,795	+				-0.9
2,759,803	-				-0.5
2,759,803	-				-1.1
2,759,821	+				+1.1
2,759,887	+				-0.7
2,759,895	+				-0.4
2,759,897	+				-0.5
2,759,905	-				-0.3
2,759,906	+				-1.8
2,759,906	+				-1.8
2,759,906	+				-0.9
2,759,906	+				-1.1
2,759,906	+				-1.2
2,759,914	-				-0.2
2,759,914	-				-0.3
2,759,914	-				-0.6
2,759,924	-				-0.1
2,759,931	-				+0.9
2,759,942	-				-0.3
2,759,945	+				-1.8
2,759,949	+				-1.3
2,759,949	+				-0.5
2,759,960	+				-1.0
2,759,968	-				-0.4
2,759,981	-				+1.6
2,759,991	-				-1.4
2,760,012	+				+0.2
2,760,051	-				-1.0
2,760,058	+				-1.5
2,760,077	+		GFF2734	0.10	-1.2
2,760,085	-		GFF2734	0.11	-0.2
2,760,085	-		GFF2734	0.11	-0.5
2,760,097	-		GFF2734	0.12	-0.6
2,760,097	-		GFF2734	0.12	-1.0
2,760,120	+		GFF2734	0.14	+1.8
2,760,120	+		GFF2734	0.14	+0.7
2,760,128	-		GFF2734	0.14	-0.8
2,760,128	-		GFF2734	0.14	+0.7
2,760,150	+		GFF2734	0.16	-1.6
2,760,152	+		GFF2734	0.16	-0.1
2,760,156	-		GFF2734	0.17	-0.2
2,760,157	+		GFF2734	0.17	-0.9
2,760,158	-		GFF2734	0.17	+1.0
2,760,164	-		GFF2734	0.17	-0.8
2,760,165	-		GFF2734	0.17	+0.6
2,760,172	+		GFF2734	0.18	+1.1
2,760,183	-		GFF2734	0.19	-1.5
2,760,196	+		GFF2734	0.20	-0.4
2,760,196	+		GFF2734	0.20	-1.1
2,760,196	+		GFF2734	0.20	-0.8
2,760,196	+		GFF2734	0.20	-0.6
2,760,201	+		GFF2734	0.20	-1.6
2,760,201	+		GFF2734	0.20	-1.4
2,760,204	-		GFF2734	0.20	-1.0
2,760,204	-		GFF2734	0.20	+1.1
2,760,204	-		GFF2734	0.20	-1.1
2,760,204	-		GFF2734	0.20	+0.5
2,760,204	-		GFF2734	0.20	-0.8
2,760,204	-		GFF2734	0.20	-0.4
2,760,209	-		GFF2734	0.21	-1.0
2,760,209	-		GFF2734	0.21	-2.1
2,760,234	+		GFF2734	0.23	-1.0
2,760,242	-		GFF2734	0.23	-2.0
2,760,251	+		GFF2734	0.24	-0.8
2,760,251	-		GFF2734	0.24	-2.1
2,760,261	-		GFF2734	0.25	+0.1
2,760,268	+		GFF2734	0.26	-1.3
2,760,278	-		GFF2734	0.26	-1.0
2,760,303	+		GFF2734	0.28	+0.1
2,760,314	+		GFF2734	0.29	+0.6
2,760,314	+		GFF2734	0.29	-0.6
2,760,314	+		GFF2734	0.29	+0.2
2,760,314	+		GFF2734	0.29	-1.7
2,760,314	+		GFF2734	0.29	-0.3
2,760,314	+		GFF2734	0.29	-0.3
2,760,314	+		GFF2734	0.29	-0.1
2,760,314	+		GFF2734	0.29	+1.1
2,760,314	+		GFF2734	0.29	-1.3
2,760,314	+		GFF2734	0.29	-0.9
2,760,321	-		GFF2734	0.30	-0.2
2,760,322	-		GFF2734	0.30	-0.8
2,760,322	-		GFF2734	0.30	-0.4
2,760,322	-		GFF2734	0.30	-0.6
2,760,322	-		GFF2734	0.30	+0.3
2,760,322	-		GFF2734	0.30	-0.9
2,760,322	-		GFF2734	0.30	+0.7
2,760,322	-		GFF2734	0.30	+1.6
2,760,349	-		GFF2734	0.32	-1.1
2,760,366	+		GFF2734	0.33	+0.8
2,760,376	+		GFF2734	0.34	-2.1
2,760,376	+		GFF2734	0.34	-1.4
2,760,376	+		GFF2734	0.34	-1.1
2,760,376	+		GFF2734	0.34	-1.8
2,760,376	+		GFF2734	0.34	+0.3
2,760,379	-		GFF2734	0.34	-1.4
2,760,384	-		GFF2734	0.35	-0.7
2,760,384	-		GFF2734	0.35	-0.3
2,760,384	-		GFF2734	0.35	+0.6
2,760,389	-		GFF2734	0.35	+0.6
2,760,423	+		GFF2734	0.38	+0.1
2,760,424	-		GFF2734	0.38	-0.4
2,760,474	+		GFF2734	0.42	+1.3
2,760,477	-		GFF2734	0.42	+0.0
2,760,482	-		GFF2734	0.43	+0.4
2,760,482	-		GFF2734	0.43	+0.5
2,760,482	-		GFF2734	0.43	-0.6
2,760,499	+		GFF2734	0.44	-1.3
2,760,507	+		GFF2734	0.45	-0.9
2,760,507	+		GFF2734	0.45	-1.1
2,760,515	-		GFF2734	0.45	+0.4
2,760,515	-		GFF2734	0.45	-0.6
2,760,517	+		GFF2734	0.45	-2.0
2,760,517	+		GFF2734	0.45	-1.1
2,760,520	-		GFF2734	0.46	+0.8
2,760,520	-		GFF2734	0.46	-0.6
2,760,525	-		GFF2734	0.46	+0.9
2,760,525	-		GFF2734	0.46	-0.7
2,760,530	-		GFF2734	0.46	-0.9
2,760,530	-		GFF2734	0.46	+0.2
2,760,585	+		GFF2734	0.51	-0.6
2,760,594	+		GFF2734	0.51	-0.4
2,760,594	+		GFF2734	0.51	-0.4
2,760,594	-		GFF2734	0.51	+0.7
2,760,595	+		GFF2734	0.52	-1.2
2,760,602	-		GFF2734	0.52	-1.1
2,760,602	-		GFF2734	0.52	+0.2
2,760,612	-		GFF2734	0.53	+0.6
2,760,612	-		GFF2734	0.53	-0.6
2,760,632	+		GFF2734	0.54	+0.7
2,760,691	+		GFF2734	0.59	-1.1
2,760,743	+		GFF2734	0.63	-1.3
2,760,743	+		GFF2734	0.63	-1.0
2,760,743	+		GFF2734	0.63	-2.3
2,760,743	+		GFF2734	0.63	-0.4
2,760,751	-		GFF2734	0.64	-0.6
2,760,751	-		GFF2734	0.64	+0.3
2,760,751	-		GFF2734	0.64	+1.2
2,760,751	-		GFF2734	0.64	-1.7
2,760,751	-		GFF2734	0.64	-1.1
2,760,773	-		GFF2734	0.66	-0.3
2,760,783	-		GFF2734	0.67	-1.0
2,760,803	+		GFF2734	0.68	-1.3
2,760,813	+		GFF2734	0.69	-1.4
2,760,813	+		GFF2734	0.69	-0.3
2,760,813	+		GFF2734	0.69	-0.9
2,760,827	-		GFF2734	0.70	-0.1
2,760,844	+		GFF2734	0.71	-0.5
2,760,871	+		GFF2734	0.74	-0.7
2,760,871	+		GFF2734	0.74	+0.9
2,760,881	+		GFF2734	0.74	-0.3
2,760,881	+		GFF2734	0.74	-1.9
2,760,881	+		GFF2734	0.74	-0.2
2,760,883	+		GFF2734	0.74	-0.6
2,760,883	+		GFF2734	0.74	+0.5
2,760,888	+		GFF2734	0.75	-1.3
2,760,889	-		GFF2734	0.75	+0.2
2,760,889	-		GFF2734	0.75	-1.0
2,760,889	-		GFF2734	0.75	-0.5
2,760,889	-		GFF2734	0.75	-0.4
2,760,891	-		GFF2734	0.75	+0.1
2,760,891	-		GFF2734	0.75	-1.6
2,760,891	-		GFF2734	0.75	-1.0
2,760,891	-		GFF2734	0.75	-1.5
2,760,891	-		GFF2734	0.75	-1.3
2,760,896	-		GFF2734	0.75	+0.5
2,760,945	+		GFF2734	0.79	-0.4
2,760,949	+		GFF2734	0.80	-1.7
2,760,968	+		GFF2734	0.81	-0.3
2,760,968	+		GFF2734	0.81	-2.6
2,760,976	-		GFF2734	0.82	-0.6
2,760,976	-		GFF2734	0.82	-1.7
2,760,976	-		GFF2734	0.82	-1.2
2,760,976	-		GFF2734	0.82	-1.1
2,760,976	-		GFF2734	0.82	+0.3
2,760,976	-		GFF2734	0.82	-0.4
2,760,976	-		GFF2734	0.82	-0.4
2,760,976	-		GFF2734	0.82	-2.4
2,760,976	-		GFF2734	0.82	+1.4
2,761,015	-		GFF2734	0.85	-0.7
2,761,051	+		GFF2734	0.88	-0.3
2,761,051	+		GFF2734	0.88	+0.4
2,761,051	+		GFF2734	0.88	+0.0
2,761,051	+		GFF2734	0.88	-0.5
2,761,051	+		GFF2734	0.88	-0.8
2,761,051	+		GFF2734	0.88	-1.6
2,761,051	+		GFF2734	0.88	-0.7
2,761,059	-		GFF2734	0.88	+0.4
2,761,059	-		GFF2734	0.88	+1.5
2,761,059	-		GFF2734	0.88	+1.1
2,761,059	-		GFF2734	0.88	+0.0
2,761,064	-		GFF2734	0.89	-0.6
2,761,064	-		GFF2734	0.89	+0.4
2,761,064	-		GFF2734	0.89	+0.2
2,761,068	+		GFF2734	0.89	+0.2
2,761,107	+				-1.1
2,761,156	+				+0.7
2,761,169	-				-0.7
2,761,184	+				-1.8
2,761,184	+				+0.7
2,761,184	+				-0.4
2,761,184	+				+0.6
2,761,184	+				-0.5
2,761,184	+				-1.2
2,761,184	+				+0.4
2,761,184	+				+0.5
2,761,184	+				+0.5
2,761,184	+				-0.7
2,761,184	+				-0.6
2,761,184	+				-0.6
2,761,184	+				+0.3
2,761,184	+				-1.2
2,761,184	+				-1.3
2,761,184	+				+1.0
2,761,184	+				+0.7
2,761,184	+				-2.1
2,761,184	+				+0.6
2,761,184	+				-0.9
2,761,184	+				-0.8
2,761,187	-				+0.3
2,761,192	-				-1.2
2,761,192	-				-0.6
2,761,192	-				+0.8
2,761,192	-				-0.1
2,761,192	-				+1.0
2,761,192	-				-1.1
2,761,192	-				-1.1
2,761,192	-				+0.0
2,761,192	-				+0.5
2,761,192	-				-1.1
2,761,192	-				-0.7
2,761,192	-				-0.3
2,761,192	-				+0.9
2,761,192	-				+0.8
2,761,192	-				-0.4
2,761,192	-				-0.5
2,761,192	-				-0.4
2,761,192	-				+1.2
2,761,192	-				-0.3
2,761,192	-				-0.8
2,761,192	-				-0.0
2,761,192	-				-0.5
2,761,192	-				-1.4
2,761,192	-				-1.4
2,761,215	-				-1.3
2,761,216	+				+1.3
2,761,230	+				-1.5
2,761,230	+				+0.5
2,761,230	+				+1.2
2,761,234	-				+0.1
2,761,244	+				+0.3
2,761,252	-				-1.1
2,761,267	-				-0.7
2,761,302	+				-0.5
2,761,305	+				-1.1
2,761,336	+		GFF2735	0.10	-0.8
2,761,353	+		GFF2735	0.11	+0.7
2,761,372	+		GFF2735	0.13	-0.6
2,761,372	-		GFF2735	0.13	-0.1
2,761,394	+		GFF2735	0.15	+0.8
2,761,394	+		GFF2735	0.15	-1.4
2,761,394	+		GFF2735	0.15	+0.1
2,761,394	+		GFF2735	0.15	+0.4
2,761,394	+		GFF2735	0.15	-0.4
2,761,394	+		GFF2735	0.15	-0.7
2,761,394	+		GFF2735	0.15	-0.1
2,761,402	-		GFF2735	0.15	-0.9
2,761,402	-		GFF2735	0.15	-1.1
2,761,402	-		GFF2735	0.15	+0.4
2,761,432	+		GFF2735	0.17	+0.1
2,761,440	-		GFF2735	0.18	-1.0
2,761,440	-		GFF2735	0.18	-1.0
2,761,440	-		GFF2735	0.18	+0.6
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2,761,480	+		GFF2735	0.21	-0.9
2,761,480	+		GFF2735	0.21	-0.5
2,761,480	+		GFF2735	0.21	+0.2
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2,761,488	-		GFF2735	0.22	-0.9
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2,761,488	-		GFF2735	0.22	-1.6
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2,761,490	+		GFF2735	0.22	+0.8
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2,761,521	+		GFF2735	0.24	-1.1
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2,761,540	+		GFF2735	0.25	+0.1
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2,761,548	+		GFF2735	0.26	-0.1
2,761,548	-		GFF2735	0.26	-1.0
2,761,556	-		GFF2735	0.27	-2.1
2,761,566	+		GFF2735	0.27	+0.5
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2,761,686	-		GFF2735	0.36	+1.1
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2,761,690	+		GFF2735	0.37	+1.4
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2,761,700	+		GFF2735	0.37	+0.7
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2,761,732	+		GFF2735	0.40	-1.5
2,761,734	+		GFF2735	0.40	-1.2
2,761,735	-		GFF2735	0.40	-0.3
2,761,740	-		GFF2735	0.40	-1.6
2,761,750	-		GFF2735	0.41	-1.9
2,761,750	-		GFF2735	0.41	-2.1
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2,761,780	+		GFF2735	0.43	-2.0
2,761,780	+		GFF2735	0.43	-0.4
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2,761,850	-		GFF2735	0.49	-0.3
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2,761,919	-		GFF2735	0.54	-2.3
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2,761,946	+		GFF2735	0.56	+1.5
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2,761,948	+		GFF2735	0.56	-1.8
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2,761,956	-		GFF2735	0.57	+0.3
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2,761,990	+		GFF2735	0.59	+0.6
2,762,000	+		GFF2735	0.60	+0.8
2,762,003	-		GFF2735	0.60	-1.8
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2,762,017	+		GFF2735	0.61	-0.5
2,762,050	+		GFF2735	0.64	-0.3
2,762,075	+		GFF2735	0.66	-0.1
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2,762,114	-		GFF2735	0.68	-0.4
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2,762,130	+		GFF2735	0.70	+0.1
2,762,130	+		GFF2735	0.70	+1.0
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2,762,130	+		GFF2735	0.70	-0.8
2,762,130	+		GFF2735	0.70	-0.1
2,762,130	+		GFF2735	0.70	-0.3
2,762,130	+		GFF2735	0.70	-1.7
2,762,130	+		GFF2735	0.70	+0.4
2,762,130	+		GFF2735	0.70	-0.6
2,762,130	+		GFF2735	0.70	+0.0
2,762,130	+		GFF2735	0.70	+0.3
2,762,130	+		GFF2735	0.70	-1.3
2,762,130	+		GFF2735	0.70	-1.4
2,762,130	+		GFF2735	0.70	-1.8
2,762,138	-		GFF2735	0.70	-1.3
2,762,138	-		GFF2735	0.70	-1.6
2,762,138	-		GFF2735	0.70	-0.5
2,762,138	-		GFF2735	0.70	-0.9
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2,762,138	-		GFF2735	0.70	+0.3
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2,762,138	-		GFF2735	0.70	-0.4
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2,762,138	-		GFF2735	0.70	-1.1
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2,762,138	-		GFF2735	0.70	-0.6
2,762,138	-		GFF2735	0.70	-1.8
2,762,138	-		GFF2735	0.70	-0.1
2,762,138	-		GFF2735	0.70	-0.5
2,762,138	-		GFF2735	0.70	-0.3
2,762,149	+		GFF2735	0.71	-0.8
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2,762,157	-		GFF2735	0.72	-1.6
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2,762,159	+		GFF2735	0.72	-0.2
2,762,159	-		GFF2735	0.72	-0.7
2,762,178	-		GFF2735	0.73	+0.3
2,762,191	+		GFF2735	0.74	-0.3