Strain Fitness in Sphingobium sp. HT1-2 around GFF2730

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,752,268	+		GFF2729	0.15	+0.7
2,752,273	+		GFF2729	0.15	-1.3
2,752,276	-		GFF2729	0.16	-0.5
2,752,281	-		GFF2729	0.16	+0.0
2,752,281	-		GFF2729	0.16	-1.8
2,752,290	+		GFF2729	0.17	-0.4
2,752,295	+		GFF2729	0.17	-0.6
2,752,301	-		GFF2729	0.18	+0.1
2,752,329	-		GFF2729	0.20	-0.3
2,752,361	+		GFF2729	0.23	+0.4
2,752,368	+		GFF2729	0.24	-1.8
2,752,397	+		GFF2729	0.26	-0.5
2,752,397	+		GFF2729	0.26	+0.3
2,752,446	+		GFF2729	0.30	+0.9
2,752,446	+		GFF2729	0.30	-0.2
2,752,447	+		GFF2729	0.30	+0.2
2,752,448	-		GFF2729	0.30	-0.7
2,752,454	-		GFF2729	0.31	-1.5
2,752,454	-		GFF2729	0.31	-1.3
2,752,454	-		GFF2729	0.31	-1.1
2,752,498	-		GFF2729	0.35	-0.6
2,752,506	+		GFF2729	0.35	-1.4
2,752,506	+		GFF2729	0.35	+0.3
2,752,506	+		GFF2729	0.35	-0.8
2,752,506	+		GFF2729	0.35	-0.8
2,752,506	+		GFF2729	0.35	-0.1
2,752,506	+		GFF2729	0.35	-0.4
2,752,514	-		GFF2729	0.36	-1.4
2,752,514	-		GFF2729	0.36	-0.7
2,752,514	-		GFF2729	0.36	+0.6
2,752,514	-		GFF2729	0.36	+0.1
2,752,514	-		GFF2729	0.36	-0.7
2,752,514	-		GFF2729	0.36	-1.4
2,752,514	-		GFF2729	0.36	-1.3
2,752,514	-		GFF2729	0.36	-0.8
2,752,514	-		GFF2729	0.36	-0.1
2,752,514	-		GFF2729	0.36	+0.4
2,752,536	+		GFF2729	0.38	-1.7
2,752,545	+		GFF2729	0.39	+0.9
2,752,545	+		GFF2729	0.39	+1.2
2,752,545	+		GFF2729	0.39	-1.1
2,752,545	+		GFF2729	0.39	+0.5
2,752,545	+		GFF2729	0.39	+0.5
2,752,545	+		GFF2729	0.39	-0.3
2,752,545	+		GFF2729	0.39	-1.4
2,752,545	+		GFF2729	0.39	-1.6
2,752,545	+		GFF2729	0.39	-2.3
2,752,553	-		GFF2729	0.39	-0.2
2,752,553	-		GFF2729	0.39	-1.2
2,752,553	-		GFF2729	0.39	-1.4
2,752,553	-		GFF2729	0.39	+0.7
2,752,553	-		GFF2729	0.39	-1.1
2,752,553	-		GFF2729	0.39	+0.7
2,752,553	-		GFF2729	0.39	-2.4
2,752,553	-		GFF2729	0.39	+1.0
2,752,560	+		GFF2729	0.40	-0.2
2,752,568	+		GFF2729	0.41	-0.1
2,752,568	-		GFF2729	0.41	-0.7
2,752,568	-		GFF2729	0.41	+0.6
2,752,568	-		GFF2729	0.41	-1.7
2,752,568	-		GFF2729	0.41	-0.4
2,752,568	-		GFF2729	0.41	-1.1
2,752,569	-		GFF2729	0.41	-0.8
2,752,569	-		GFF2729	0.41	-0.1
2,752,569	-		GFF2729	0.41	-0.3
2,752,595	+		GFF2729	0.43	-0.1
2,752,606	+		GFF2729	0.44	-1.3
2,752,614	-		GFF2729	0.45	-1.0
2,752,614	-		GFF2729	0.45	+0.8
2,752,614	-		GFF2729	0.45	-0.1
2,752,615	+		GFF2729	0.45	-0.7
2,752,616	+		GFF2729	0.45	+0.7
2,752,616	+		GFF2729	0.45	+0.1
2,752,622	-		GFF2729	0.45	-0.1
2,752,635	-		GFF2729	0.46	-0.3
2,752,658	-		GFF2729	0.48	-0.4
2,752,667	+		GFF2729	0.49	+0.9
2,752,667	+		GFF2729	0.49	-0.2
2,752,667	+		GFF2729	0.49	-1.1
2,752,667	+		GFF2729	0.49	-0.3
2,752,667	+		GFF2729	0.49	+0.8
2,752,667	+		GFF2729	0.49	+1.0
2,752,667	+		GFF2729	0.49	-1.3
2,752,672	+		GFF2729	0.50	+1.2
2,752,673	-		GFF2729	0.50	-0.3
2,752,675	-		GFF2729	0.50	-1.1
2,752,675	-		GFF2729	0.50	+0.8
2,752,675	-		GFF2729	0.50	-0.4
2,752,675	-		GFF2729	0.50	-0.6
2,752,675	-		GFF2729	0.50	-0.3
2,752,675	-		GFF2729	0.50	-0.4
2,752,675	-		GFF2729	0.50	-0.6
2,752,675	-		GFF2729	0.50	-0.8
2,752,675	-		GFF2729	0.50	+1.1
2,752,675	-		GFF2729	0.50	-0.8
2,752,675	-		GFF2729	0.50	+0.4
2,752,675	-		GFF2729	0.50	-1.3
2,752,677	+		GFF2729	0.50	+0.2
2,752,677	+		GFF2729	0.50	-2.1
2,752,677	+		GFF2729	0.50	+0.3
2,752,685	-		GFF2729	0.51	-1.3
2,752,685	-		GFF2729	0.51	-1.0
2,752,698	+		GFF2729	0.52	-2.0
2,752,699	-		GFF2729	0.52	+0.9
2,752,701	+		GFF2729	0.52	-1.0
2,752,706	-		GFF2729	0.53	+0.1
2,752,719	-		GFF2729	0.54	-1.0
2,752,723	+		GFF2729	0.54	-2.3
2,752,742	+		GFF2729	0.56	-1.7
2,752,745	+		GFF2729	0.56	-0.7
2,752,751	+		GFF2729	0.56	-0.2
2,752,751	-		GFF2729	0.56	-0.3
2,752,751	-		GFF2729	0.56	-0.6
2,752,751	-		GFF2729	0.56	+2.8
2,752,753	-		GFF2729	0.57	+1.7
2,752,753	-		GFF2729	0.57	+0.4
2,752,753	-		GFF2729	0.57	-2.9
2,752,788	+		GFF2729	0.60	+0.9
2,752,797	+		GFF2729	0.60	-0.5
2,752,802	+		GFF2729	0.61	-1.6
2,752,802	+		GFF2729	0.61	-1.0
2,752,802	+		GFF2729	0.61	-1.9
2,752,805	-		GFF2729	0.61	-0.6
2,752,805	-		GFF2729	0.61	+1.0
2,752,805	-		GFF2729	0.61	-0.7
2,752,810	-		GFF2729	0.61	+0.5
2,752,810	-		GFF2729	0.61	-0.6
2,752,810	-		GFF2729	0.61	-0.8
2,752,820	-		GFF2729	0.62	+1.8
2,752,822	+		GFF2729	0.62	-1.3
2,752,880	+		GFF2729	0.67	-0.9
2,752,888	-		GFF2729	0.68	-1.2
2,752,893	-		GFF2729	0.69	-0.0
2,752,894	+		GFF2729	0.69	-2.6
2,752,984	+		GFF2729	0.76	-0.4
2,752,992	+		GFF2729	0.77	+0.3
2,752,992	+		GFF2729	0.77	-0.6
2,752,992	+		GFF2729	0.77	-0.8
2,753,000	-		GFF2729	0.78	+0.4
2,753,000	-		GFF2729	0.78	-0.9
2,753,000	-		GFF2729	0.78	+0.2
2,753,013	-		GFF2729	0.79	-0.4
2,753,021	-		GFF2729	0.80	-0.3
2,753,042	+		GFF2729	0.81	+0.1
2,753,071	-		GFF2729	0.84	-0.6
2,753,071	-		GFF2729	0.84	+1.3
2,753,072	+		GFF2729	0.84	-1.0
2,753,072	+		GFF2729	0.84	-1.8
2,753,080	-		GFF2729	0.85	-0.5
2,753,082	+		GFF2729	0.85	+0.8
2,753,088	+		GFF2729	0.85	-1.8
2,753,090	-		GFF2729	0.85	-0.4
2,753,098	+		GFF2729	0.86	+0.4
2,753,116	+		GFF2729	0.88	+0.5
2,753,116	+		GFF2729	0.88	-2.2
2,753,118	+		GFF2729	0.88	+0.3
2,753,132	-		GFF2729	0.89	-0.6
2,753,132	-		GFF2729	0.89	+0.6
2,753,139	-		GFF2729	0.90	-0.6
2,753,140	+		GFF2729	0.90	-1.1
2,753,147	+				-1.2
2,753,154	+				+0.5
2,753,154	+				-0.7
2,753,157	-				-1.2
2,753,162	-				-0.6
2,753,162	-				-0.2
2,753,162	-				-0.8
2,753,164	+				-1.2
2,753,178	+				-1.0
2,753,183	+				-0.2
2,753,183	+				+0.5
2,753,185	-				-0.6
2,753,191	-				+0.3
2,753,191	-				-1.1
2,753,191	-				+1.2
2,753,191	-				-2.5
2,753,191	-				+0.3
2,753,208	+				-0.6
2,753,209	+				-1.2
2,753,217	-				-0.3
2,753,229	-				+0.1
2,753,234	-				-0.8
2,753,316	-				+0.5
2,753,318	+				-0.9
2,753,318	+				-1.1
2,753,318	+				-0.3
2,753,318	+				-0.4
2,753,318	+				-2.1
2,753,326	-				-0.1
2,753,331	-				+1.6
2,753,333	+				+1.2
2,753,334	+				-1.3
2,753,334	-				-0.0
2,753,339	+				-1.4
2,753,341	-				-0.2
2,753,341	-				-1.2
2,753,341	-				-1.0
2,753,342	-				-1.6
2,753,342	-				-1.4
2,753,360	-				-1.2
2,753,360	-				+0.5
2,753,360	-				-0.6
2,753,360	-				-1.6
2,753,375	+		GFF2730	0.11	+0.1
2,753,375	+		GFF2730	0.11	-0.1
2,753,378	-		GFF2730	0.11	-1.1
2,753,391	+		GFF2730	0.13	-1.6
2,753,462	+		GFF2730	0.19	-0.0
2,753,467	+		GFF2730	0.20	+0.5
2,753,467	-		GFF2730	0.20	+0.6
2,753,477	+		GFF2730	0.21	+0.6
2,753,477	+		GFF2730	0.21	-0.0
2,753,477	+		GFF2730	0.21	-1.2
2,753,477	+		GFF2730	0.21	-1.7
2,753,477	+		GFF2730	0.21	-1.0
2,753,477	+		GFF2730	0.21	-0.1
2,753,477	+		GFF2730	0.21	-0.5
2,753,477	+		GFF2730	0.21	+0.6
2,753,477	+		GFF2730	0.21	+0.6
2,753,485	-		GFF2730	0.21	-0.8
2,753,485	-		GFF2730	0.21	-0.0
2,753,485	-		GFF2730	0.21	-2.4
2,753,485	-		GFF2730	0.21	-0.6
2,753,485	-		GFF2730	0.21	-0.7
2,753,485	-		GFF2730	0.21	-0.6
2,753,485	-		GFF2730	0.21	-1.1
2,753,497	+		GFF2730	0.22	+0.7
2,753,497	+		GFF2730	0.22	+0.2
2,753,497	+		GFF2730	0.22	-1.0
2,753,497	+		GFF2730	0.22	+0.2
2,753,497	+		GFF2730	0.22	+0.7
2,753,503	-		GFF2730	0.23	-0.5
2,753,505	-		GFF2730	0.23	-1.3
2,753,515	-		GFF2730	0.24	-0.8
2,753,525	-		GFF2730	0.25	+0.5
2,753,539	+		GFF2730	0.26	+0.0
2,753,547	-		GFF2730	0.27	-1.6
2,753,565	+		GFF2730	0.29	+0.9
2,753,573	-		GFF2730	0.30	-1.0
2,753,573	-		GFF2730	0.30	-1.1
2,753,588	+		GFF2730	0.31	+0.5
2,753,593	+		GFF2730	0.31	-0.3
2,753,596	-		GFF2730	0.32	+0.9
2,753,601	-		GFF2730	0.32	-0.6
2,753,606	-		GFF2730	0.33	-2.9
2,753,606	-		GFF2730	0.33	+0.1
2,753,614	+		GFF2730	0.33	-0.3
2,753,618	+		GFF2730	0.34	-2.5
2,753,618	+		GFF2730	0.34	-0.7
2,753,618	+		GFF2730	0.34	-1.2
2,753,626	-		GFF2730	0.34	-2.1
2,753,627	-		GFF2730	0.35	+1.3
2,753,648	-		GFF2730	0.36	-0.4
2,753,658	+		GFF2730	0.37	+0.3
2,753,670	-		GFF2730	0.39	-0.2
2,753,679	+		GFF2730	0.39	-0.4
2,753,686	+		GFF2730	0.40	-0.5
2,753,694	-		GFF2730	0.41	-0.6
2,753,705	-		GFF2730	0.42	-0.5
2,753,708	-		GFF2730	0.42	-0.7
2,753,723	-		GFF2730	0.43	+0.2
2,753,730	+		GFF2730	0.44	+0.9
2,753,753	+		GFF2730	0.46	-1.3
2,753,755	-		GFF2730	0.46	-0.4
2,753,761	-		GFF2730	0.47	-0.5
2,753,767	+		GFF2730	0.48	-0.4
2,753,775	-		GFF2730	0.48	-1.6
2,753,787	-		GFF2730	0.49	-0.4
2,753,797	-		GFF2730	0.50	+1.2
2,753,821	+		GFF2730	0.53	-1.9
2,753,844	+		GFF2730	0.55	-0.9
2,753,845	-		GFF2730	0.55	+0.7
2,753,850	-		GFF2730	0.55	-0.3
2,753,852	+		GFF2730	0.55	-1.3
2,753,852	+		GFF2730	0.55	-1.1
2,753,852	-		GFF2730	0.55	-1.1
2,753,860	-		GFF2730	0.56	-1.7
2,753,860	-		GFF2730	0.56	+0.5
2,753,870	+		GFF2730	0.57	+0.3
2,753,876	-		GFF2730	0.58	-1.0
2,753,876	-		GFF2730	0.58	-0.8
2,753,876	-		GFF2730	0.58	+1.0
2,753,880	+		GFF2730	0.58	-1.1
2,753,898	+		GFF2730	0.60	-0.9
2,753,898	+		GFF2730	0.60	-0.3
2,753,906	-		GFF2730	0.61	-0.9
2,753,906	-		GFF2730	0.61	-2.5
2,753,906	-		GFF2730	0.61	-1.9
2,753,915	+		GFF2730	0.61	+0.0
2,753,940	+		GFF2730	0.64	+1.0
2,753,945	+		GFF2730	0.64	+0.7
2,753,949	+		GFF2730	0.65	-1.3
2,753,957	-		GFF2730	0.65	+0.1
2,753,959	+		GFF2730	0.65	-0.6
2,753,972	-		GFF2730	0.67	+0.5
2,753,972	-		GFF2730	0.67	-2.7
2,753,977	-		GFF2730	0.67	+1.3
2,753,996	-		GFF2730	0.69	-1.4
2,753,998	-		GFF2730	0.69	+0.4
2,754,014	+		GFF2730	0.71	-2.3
2,754,022	-		GFF2730	0.71	-0.6
2,754,022	-		GFF2730	0.71	+0.2
2,754,033	+		GFF2730	0.72	-0.2
2,754,041	-		GFF2730	0.73	-1.2
2,754,054	+		GFF2730	0.74	-1.7
2,754,077	+		GFF2730	0.76	-0.9
2,754,080	-		GFF2730	0.77	+0.8
2,754,080	-		GFF2730	0.77	-0.3
2,754,088	+		GFF2730	0.77	-0.7
2,754,096	-		GFF2730	0.78	-1.3
2,754,099	+		GFF2730	0.78	-1.2
2,754,102	+		GFF2730	0.79	-0.7
2,754,106	-		GFF2730	0.79	+0.6
2,754,124	+		GFF2730	0.81	-0.8
2,754,124	+		GFF2730	0.81	-0.0
2,754,127	-		GFF2730	0.81	+0.2
2,754,165	+		GFF2730	0.85	-0.1
2,754,171	+		GFF2730	0.85	-1.2
2,754,171	+		GFF2730	0.85	+1.7
2,754,173	-		GFF2730	0.85	-0.5
2,754,174	-		GFF2730	0.85	-0.1
2,754,174	-		GFF2730	0.85	-0.6
2,754,176	+		GFF2730	0.86	-0.9
2,754,176	+		GFF2730	0.86	+0.5
2,754,176	+		GFF2730	0.86	-1.7
2,754,176	+		GFF2730	0.86	-1.3
2,754,176	+		GFF2730	0.86	-1.8
2,754,176	+		GFF2730	0.86	-0.8
2,754,176	+		GFF2730	0.86	-1.1
2,754,176	+		GFF2730	0.86	+0.0
2,754,176	+		GFF2730	0.86	-1.1
2,754,176	+		GFF2730	0.86	-1.5
2,754,176	+		GFF2730	0.86	-0.5
2,754,176	+		GFF2730	0.86	-0.7
2,754,176	+		GFF2730	0.86	+0.2
2,754,176	+		GFF2730	0.86	-1.3
2,754,176	+		GFF2730	0.86	+1.8
2,754,176	+		GFF2730	0.86	-1.7
2,754,176	+		GFF2730	0.86	+0.4
2,754,176	+		GFF2730	0.86	-1.1
2,754,176	+		GFF2730	0.86	-1.7
2,754,176	+		GFF2730	0.86	-2.4
2,754,176	+		GFF2730	0.86	-0.8
2,754,176	+		GFF2730	0.86	-0.0
2,754,176	+		GFF2730	0.86	+1.1
2,754,176	+		GFF2730	0.86	-1.0
2,754,176	+		GFF2730	0.86	-0.7
2,754,176	+		GFF2730	0.86	+0.7
2,754,176	+		GFF2730	0.86	-1.1
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2,754,184	-		GFF2730	0.86	-0.3
2,754,184	-		GFF2730	0.86	-1.2
2,754,198	+		GFF2730	0.88	+0.3
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2,754,236	+				+2.0
2,754,238	-				-0.2
2,754,238	-				-1.3
2,754,241	+				-1.4
2,754,241	+				-1.0
2,754,241	+				-1.0
2,754,244	-				-0.8
2,754,249	-				+0.5
2,754,249	-				-0.9
2,754,253	+				-0.3
2,754,253	+				+0.1
2,754,297	-				-0.8
2,754,322	+				-0.6
2,754,323	+				+1.5
2,754,333	+				-1.6
2,754,335	-				-0.7
2,754,347	-				-0.2
2,754,357	+				-1.4
2,754,367	+				-0.3
2,754,367	+				-1.2
2,754,367	+				+0.4
2,754,367	+				+0.3
2,754,367	+				-1.1
2,754,367	+				-0.4
2,754,367	+				-1.7
2,754,367	+				-1.7
2,754,367	+				-0.2
2,754,367	+				+0.1
2,754,367	+				+0.5
2,754,367	+				+0.0
2,754,367	+				-0.3
2,754,375	-				-1.4
2,754,375	-				-1.5
2,754,375	-				+0.7
2,754,375	-				-0.4
2,754,375	-				-1.4
2,754,375	-				-2.0
2,754,375	-				-0.6
2,754,375	-				-0.6
2,754,375	-				-1.3
2,754,398	-				+0.6
2,754,423	-				-2.3
2,754,428	-				-1.1
2,754,434	-				+0.8
2,754,435	+				-0.1
2,754,490	+				+0.8
2,754,491	-				-0.7
2,754,495	+				-0.3
2,754,495	+				+0.4
2,754,495	+				-1.0
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2,754,495	+				+0.3
2,754,495	+				-1.3
2,754,498	-				-0.7
2,754,503	-				+0.4
2,754,503	-				+1.1
2,754,503	-				-0.5
2,754,503	-				-1.1
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2,754,521	-				-0.0
2,754,521	-				+0.3
2,754,529	-				-1.6
2,754,544	+				-0.3
2,754,552	-				+0.3
2,754,553	-				+2.0
2,754,554	-				-1.7
2,754,560	-				+1.4
2,754,565	+				-0.3
2,754,573	-				+0.7
2,754,611	-				+0.3
2,754,621	-				+0.7
2,754,636	+				+0.6
2,754,636	+				-2.3
2,754,636	+				-1.3
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2,754,636	+				+0.1
2,754,636	+				+0.9
2,754,636	+				-0.9
2,754,644	-				-2.6
2,754,644	-				+0.8
2,754,644	-				-0.7
2,754,644	-				-0.3
2,754,644	-				-0.7
2,754,644	-				-0.5
2,754,644	-				-1.4
2,754,646	-				-0.7
2,754,669	-				-0.7
2,754,670	+				-0.9
2,754,678	-				+0.2
2,754,678	-				+0.5
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2,754,758	+		GFF2731	0.14	-0.7
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2,754,777	+		GFF2731	0.15	-0.7
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2,754,882	+		GFF2731	0.21	-1.8
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2,754,897	+		GFF2731	0.22	-1.7
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