Strain Fitness in Sphingobium sp. HT1-2 around GFF2729

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,751,095	+		GFF2727	0.84	-1.2
2,751,095	+		GFF2727	0.84	+0.4
2,751,095	+		GFF2727	0.84	-0.7
2,751,101	+		GFF2727	0.85	+0.6
2,751,103	-		GFF2727	0.85	-1.2
2,751,103	-		GFF2727	0.85	-1.6
2,751,124	-		GFF2727	0.88	-0.3
2,751,126	-		GFF2727	0.89	+0.2
2,751,130	+		GFF2727	0.89	-0.5
2,751,130	+		GFF2727	0.89	-0.9
2,751,130	+		GFF2727	0.89	-0.3
2,751,130	+		GFF2727	0.89	-0.3
2,751,130	+		GFF2727	0.89	-0.9
2,751,130	+		GFF2727	0.89	-0.3
2,751,130	+		GFF2727	0.89	+0.4
2,751,138	-				+0.1
2,751,138	-				-1.8
2,751,140	+				-1.8
2,751,150	+				-0.1
2,751,150	+				+0.7
2,751,151	+				-0.7
2,751,158	-				-1.3
2,751,163	+				+0.4
2,751,163	+				-0.2
2,751,171	-				-1.1
2,751,173	+				-1.9
2,751,181	-				-1.1
2,751,201	-				+0.4
2,751,208	-				-0.8
2,751,211	+				+0.1
2,751,211	+				+0.6
2,751,211	+				-0.0
2,751,211	+				-1.3
2,751,211	+				+1.0
2,751,211	+				+0.0
2,751,212	+				-0.6
2,751,212	+				-0.4
2,751,219	-				+0.9
2,751,219	-				-0.8
2,751,220	-				-1.8
2,751,220	-				-1.4
2,751,220	-				-0.4
2,751,220	-				+0.6
2,751,220	-				+1.7
2,751,220	-				+0.3
2,751,220	-				-0.2
2,751,225	-				+0.6
2,751,227	+				-1.6
2,751,227	+				-1.5
2,751,227	+				-2.2
2,751,227	+				-0.9
2,751,227	+				+1.5
2,751,235	-				+0.8
2,751,235	-				-0.4
2,751,235	-				-0.4
2,751,244	-				-0.3
2,751,244	-				-1.2
2,751,278	+				+1.3
2,751,283	+				-0.5
2,751,288	+				+0.2
2,751,291	-				+0.6
2,751,291	-				+0.1
2,751,291	-				-1.9
2,751,309	+				+0.4
2,751,309	+				-1.0
2,751,309	+				-0.4
2,751,317	-		GFF2728	0.11	-0.3
2,751,328	+		GFF2728	0.12	-1.4
2,751,329	-		GFF2728	0.12	-0.3
2,751,340	+		GFF2728	0.14	-0.9
2,751,344	+		GFF2728	0.14	-1.1
2,751,344	+		GFF2728	0.14	-0.9
2,751,344	+		GFF2728	0.14	-0.3
2,751,355	+		GFF2728	0.15	+0.8
2,751,360	+		GFF2728	0.16	+0.9
2,751,365	+		GFF2728	0.17	+0.4
2,751,365	+		GFF2728	0.17	-0.5
2,751,365	+		GFF2728	0.17	-0.3
2,751,365	+		GFF2728	0.17	-1.0
2,751,370	+		GFF2728	0.17	+2.3
2,751,370	+		GFF2728	0.17	-2.0
2,751,373	-		GFF2728	0.18	-0.4
2,751,373	-		GFF2728	0.18	+0.1
2,751,378	-		GFF2728	0.18	+0.5
2,751,378	-		GFF2728	0.18	+0.2
2,751,378	-		GFF2728	0.18	+0.4
2,751,383	-		GFF2728	0.19	-1.1
2,751,388	+		GFF2728	0.19	-1.8
2,751,436	+		GFF2728	0.25	-1.8
2,751,436	+		GFF2728	0.25	+0.3
2,751,436	+		GFF2728	0.25	-0.6
2,751,436	+		GFF2728	0.25	-0.6
2,751,436	+		GFF2728	0.25	+0.5
2,751,443	+		GFF2728	0.26	+1.2
2,751,443	+		GFF2728	0.26	-0.5
2,751,444	-		GFF2728	0.26	-1.1
2,751,444	-		GFF2728	0.26	-0.3
2,751,451	-		GFF2728	0.27	-0.7
2,751,451	-		GFF2728	0.27	+1.0
2,751,451	-		GFF2728	0.27	-0.2
2,751,453	-		GFF2728	0.27	+0.0
2,751,458	-		GFF2728	0.28	-0.2
2,751,460	+		GFF2728	0.28	+0.4
2,751,460	+		GFF2728	0.28	+0.1
2,751,468	-		GFF2728	0.29	-1.3
2,751,468	-		GFF2728	0.29	-1.1
2,751,470	+		GFF2728	0.29	-0.3
2,751,478	-		GFF2728	0.30	-1.1
2,751,478	-		GFF2728	0.30	-0.3
2,751,480	+		GFF2728	0.31	-1.2
2,751,485	+		GFF2728	0.31	-1.2
2,751,485	+		GFF2728	0.31	-0.6
2,751,485	+		GFF2728	0.31	-2.2
2,751,485	+		GFF2728	0.31	+1.1
2,751,485	+		GFF2728	0.31	-0.5
2,751,488	-		GFF2728	0.32	-1.1
2,751,493	-		GFF2728	0.32	+0.1
2,751,493	-		GFF2728	0.32	+0.9
2,751,493	-		GFF2728	0.32	-0.6
2,751,510	-		GFF2728	0.34	+0.7
2,751,510	-		GFF2728	0.34	-0.4
2,751,525	+		GFF2728	0.36	-1.9
2,751,533	-		GFF2728	0.37	-0.3
2,751,540	-		GFF2728	0.38	-1.6
2,751,541	-		GFF2728	0.38	+0.6
2,751,541	-		GFF2728	0.38	-1.0
2,751,541	-		GFF2728	0.38	+0.2
2,751,543	+		GFF2728	0.38	-0.8
2,751,546	-		GFF2728	0.39	-1.2
2,751,551	-		GFF2728	0.39	-1.5
2,751,552	+		GFF2728	0.39	-0.5
2,751,565	+		GFF2728	0.41	+0.7
2,751,581	+		GFF2728	0.43	-0.3
2,751,581	+		GFF2728	0.43	-1.4
2,751,601	+		GFF2728	0.45	-0.1
2,751,601	+		GFF2728	0.45	+0.3
2,751,607	-		GFF2728	0.46	-0.5
2,751,608	+		GFF2728	0.46	-1.4
2,751,608	+		GFF2728	0.46	-0.5
2,751,609	+		GFF2728	0.46	-0.6
2,751,609	-		GFF2728	0.46	-0.4
2,751,616	-		GFF2728	0.47	+0.1
2,751,639	-		GFF2728	0.50	-0.1
2,751,640	+		GFF2728	0.50	+0.5
2,751,640	+		GFF2728	0.50	-1.4
2,751,648	-		GFF2728	0.51	+0.8
2,751,648	-		GFF2728	0.51	-0.6
2,751,689	+		GFF2728	0.56	-0.3
2,751,698	+		GFF2728	0.57	-2.6
2,751,698	+		GFF2728	0.57	-1.1
2,751,698	+		GFF2728	0.57	+0.2
2,751,699	+		GFF2728	0.57	-0.7
2,751,703	+		GFF2728	0.58	+0.5
2,751,703	+		GFF2728	0.58	-0.3
2,751,706	-		GFF2728	0.58	-1.1
2,751,706	-		GFF2728	0.58	-1.3
2,751,741	+		GFF2728	0.62	-1.8
2,751,741	+		GFF2728	0.62	+0.5
2,751,751	+		GFF2728	0.64	-0.8
2,751,756	+		GFF2728	0.64	-1.3
2,751,764	-		GFF2728	0.65	+0.7
2,751,764	-		GFF2728	0.65	-0.9
2,751,766	-		GFF2728	0.65	-2.2
2,751,768	-		GFF2728	0.66	+0.3
2,751,784	+		GFF2728	0.68	-0.4
2,751,792	-		GFF2728	0.68	+0.8
2,751,792	-		GFF2728	0.68	-2.7
2,751,844	-		GFF2728	0.75	-0.8
2,751,867	-		GFF2728	0.78	+0.2
2,751,878	+		GFF2728	0.79	-1.7
2,751,886	-		GFF2728	0.80	-0.5
2,751,888	+		GFF2728	0.80	-0.6
2,751,901	-		GFF2728	0.82	-1.8
2,751,901	-		GFF2728	0.82	-0.7
2,751,911	-		GFF2728	0.83	-0.7
2,751,925	+		GFF2728	0.85	-1.1
2,751,925	+		GFF2728	0.85	-1.2
2,751,933	-		GFF2728	0.86	-1.3
2,751,943	-		GFF2728	0.87	+0.2
2,751,961	+		GFF2728	0.89	-1.1
2,751,969	-				+0.1
2,751,980	+				-1.3
2,751,980	+				-1.0
2,751,988	-				-0.6
2,751,988	-				-1.3
2,751,988	-				+1.0
2,751,988	-				-1.0
2,751,988	-				+0.5
2,751,993	-				-0.7
2,751,995	+				-1.4
2,751,998	+				-0.1
2,751,998	-				-1.7
2,752,003	+				-1.6
2,752,011	-				-1.0
2,752,011	-				-0.9
2,752,011	-				+0.1
2,752,017	+				+0.7
2,752,017	+				-1.1
2,752,056	+				-0.7
2,752,062	+				-0.1
2,752,064	-				+0.8
2,752,070	-				-2.0
2,752,104	+				-1.1
2,752,119	+				+0.1
2,752,127	-				-1.3
2,752,127	-				+1.5
2,752,141	+				+0.2
2,752,141	+				+0.7
2,752,141	+				-0.9
2,752,149	-				+0.6
2,752,177	+				-1.3
2,752,177	+				-1.4
2,752,187	+				-0.6
2,752,207	-				-1.8
2,752,207	-				+0.1
2,752,207	-				-0.3
2,752,233	+		GFF2729	0.12	+0.7
2,752,233	+		GFF2729	0.12	-0.5
2,752,233	+		GFF2729	0.12	-1.3
2,752,233	+		GFF2729	0.12	-0.9
2,752,233	+		GFF2729	0.12	-0.7
2,752,241	-		GFF2729	0.13	-1.3
2,752,241	-		GFF2729	0.13	-1.0
2,752,241	-		GFF2729	0.13	-1.1
2,752,241	-		GFF2729	0.13	-0.5
2,752,241	-		GFF2729	0.13	-3.7
2,752,241	-		GFF2729	0.13	-2.3
2,752,268	+		GFF2729	0.15	+0.7
2,752,273	+		GFF2729	0.15	-1.3
2,752,276	-		GFF2729	0.16	-0.5
2,752,281	-		GFF2729	0.16	+0.0
2,752,281	-		GFF2729	0.16	-1.8
2,752,290	+		GFF2729	0.17	-0.4
2,752,295	+		GFF2729	0.17	-0.6
2,752,301	-		GFF2729	0.18	+0.1
2,752,329	-		GFF2729	0.20	-0.3
2,752,361	+		GFF2729	0.23	+0.4
2,752,368	+		GFF2729	0.24	-1.8
2,752,397	+		GFF2729	0.26	-0.5
2,752,397	+		GFF2729	0.26	+0.3
2,752,446	+		GFF2729	0.30	+0.9
2,752,446	+		GFF2729	0.30	-0.2
2,752,447	+		GFF2729	0.30	+0.2
2,752,448	-		GFF2729	0.30	-0.7
2,752,454	-		GFF2729	0.31	-1.5
2,752,454	-		GFF2729	0.31	-1.3
2,752,454	-		GFF2729	0.31	-1.1
2,752,498	-		GFF2729	0.35	-0.6
2,752,506	+		GFF2729	0.35	-1.4
2,752,506	+		GFF2729	0.35	+0.3
2,752,506	+		GFF2729	0.35	-0.8
2,752,506	+		GFF2729	0.35	-0.8
2,752,506	+		GFF2729	0.35	-0.1
2,752,506	+		GFF2729	0.35	-0.4
2,752,514	-		GFF2729	0.36	-1.4
2,752,514	-		GFF2729	0.36	-0.7
2,752,514	-		GFF2729	0.36	+0.6
2,752,514	-		GFF2729	0.36	+0.1
2,752,514	-		GFF2729	0.36	-0.7
2,752,514	-		GFF2729	0.36	-1.4
2,752,514	-		GFF2729	0.36	-1.3
2,752,514	-		GFF2729	0.36	-0.8
2,752,514	-		GFF2729	0.36	-0.1
2,752,514	-		GFF2729	0.36	+0.4
2,752,536	+		GFF2729	0.38	-1.7
2,752,545	+		GFF2729	0.39	+0.9
2,752,545	+		GFF2729	0.39	+1.2
2,752,545	+		GFF2729	0.39	-1.1
2,752,545	+		GFF2729	0.39	+0.5
2,752,545	+		GFF2729	0.39	+0.5
2,752,545	+		GFF2729	0.39	-0.3
2,752,545	+		GFF2729	0.39	-1.4
2,752,545	+		GFF2729	0.39	-1.6
2,752,545	+		GFF2729	0.39	-2.3
2,752,553	-		GFF2729	0.39	-0.2
2,752,553	-		GFF2729	0.39	-1.2
2,752,553	-		GFF2729	0.39	-1.4
2,752,553	-		GFF2729	0.39	+0.7
2,752,553	-		GFF2729	0.39	-1.1
2,752,553	-		GFF2729	0.39	+0.7
2,752,553	-		GFF2729	0.39	-2.4
2,752,553	-		GFF2729	0.39	+1.0
2,752,560	+		GFF2729	0.40	-0.2
2,752,568	+		GFF2729	0.41	-0.1
2,752,568	-		GFF2729	0.41	-0.7
2,752,568	-		GFF2729	0.41	+0.6
2,752,568	-		GFF2729	0.41	-1.7
2,752,568	-		GFF2729	0.41	-0.4
2,752,568	-		GFF2729	0.41	-1.1
2,752,569	-		GFF2729	0.41	-0.8
2,752,569	-		GFF2729	0.41	-0.1
2,752,569	-		GFF2729	0.41	-0.3
2,752,595	+		GFF2729	0.43	-0.1
2,752,606	+		GFF2729	0.44	-1.3
2,752,614	-		GFF2729	0.45	-1.0
2,752,614	-		GFF2729	0.45	+0.8
2,752,614	-		GFF2729	0.45	-0.1
2,752,615	+		GFF2729	0.45	-0.7
2,752,616	+		GFF2729	0.45	+0.7
2,752,616	+		GFF2729	0.45	+0.1
2,752,622	-		GFF2729	0.45	-0.1
2,752,635	-		GFF2729	0.46	-0.3
2,752,658	-		GFF2729	0.48	-0.4
2,752,667	+		GFF2729	0.49	+0.9
2,752,667	+		GFF2729	0.49	-0.2
2,752,667	+		GFF2729	0.49	-1.1
2,752,667	+		GFF2729	0.49	-0.3
2,752,667	+		GFF2729	0.49	+0.8
2,752,667	+		GFF2729	0.49	+1.0
2,752,667	+		GFF2729	0.49	-1.3
2,752,672	+		GFF2729	0.50	+1.2
2,752,673	-		GFF2729	0.50	-0.3
2,752,675	-		GFF2729	0.50	-1.1
2,752,675	-		GFF2729	0.50	+0.8
2,752,675	-		GFF2729	0.50	-0.4
2,752,675	-		GFF2729	0.50	-0.6
2,752,675	-		GFF2729	0.50	-0.3
2,752,675	-		GFF2729	0.50	-0.4
2,752,675	-		GFF2729	0.50	-0.6
2,752,675	-		GFF2729	0.50	-0.8
2,752,675	-		GFF2729	0.50	+1.1
2,752,675	-		GFF2729	0.50	-0.8
2,752,675	-		GFF2729	0.50	+0.4
2,752,675	-		GFF2729	0.50	-1.3
2,752,677	+		GFF2729	0.50	+0.2
2,752,677	+		GFF2729	0.50	-2.1
2,752,677	+		GFF2729	0.50	+0.3
2,752,685	-		GFF2729	0.51	-1.3
2,752,685	-		GFF2729	0.51	-1.0
2,752,698	+		GFF2729	0.52	-2.0
2,752,699	-		GFF2729	0.52	+0.9
2,752,701	+		GFF2729	0.52	-1.0
2,752,706	-		GFF2729	0.53	+0.1
2,752,719	-		GFF2729	0.54	-1.0
2,752,723	+		GFF2729	0.54	-2.3
2,752,742	+		GFF2729	0.56	-1.7
2,752,745	+		GFF2729	0.56	-0.7
2,752,751	+		GFF2729	0.56	-0.2
2,752,751	-		GFF2729	0.56	-0.3
2,752,751	-		GFF2729	0.56	-0.6
2,752,751	-		GFF2729	0.56	+2.8
2,752,753	-		GFF2729	0.57	+1.7
2,752,753	-		GFF2729	0.57	+0.4
2,752,753	-		GFF2729	0.57	-2.9
2,752,788	+		GFF2729	0.60	+0.9
2,752,797	+		GFF2729	0.60	-0.5
2,752,802	+		GFF2729	0.61	-1.6
2,752,802	+		GFF2729	0.61	-1.0
2,752,802	+		GFF2729	0.61	-1.9
2,752,805	-		GFF2729	0.61	-0.6
2,752,805	-		GFF2729	0.61	+1.0
2,752,805	-		GFF2729	0.61	-0.7
2,752,810	-		GFF2729	0.61	+0.5
2,752,810	-		GFF2729	0.61	-0.6
2,752,810	-		GFF2729	0.61	-0.8
2,752,820	-		GFF2729	0.62	+1.8
2,752,822	+		GFF2729	0.62	-1.3
2,752,880	+		GFF2729	0.67	-0.9
2,752,888	-		GFF2729	0.68	-1.2
2,752,893	-		GFF2729	0.69	-0.0
2,752,894	+		GFF2729	0.69	-2.6
2,752,984	+		GFF2729	0.76	-0.4
2,752,992	+		GFF2729	0.77	+0.3
2,752,992	+		GFF2729	0.77	-0.6
2,752,992	+		GFF2729	0.77	-0.8
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2,753,000	-		GFF2729	0.78	-0.9
2,753,000	-		GFF2729	0.78	+0.2
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2,753,082	+		GFF2729	0.85	+0.8
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2,753,116	+		GFF2729	0.88	-2.2
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2,753,132	-		GFF2729	0.89	+0.6
2,753,139	-		GFF2729	0.90	-0.6
2,753,140	+		GFF2729	0.90	-1.1
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2,753,154	+				+0.5
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2,753,157	-				-1.2
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2,753,162	-				-0.2
2,753,162	-				-0.8
2,753,164	+				-1.2
2,753,178	+				-1.0
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2,753,183	+				+0.5
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2,753,191	-				+0.3
2,753,191	-				-1.1
2,753,191	-				+1.2
2,753,191	-				-2.5
2,753,191	-				+0.3
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2,753,209	+				-1.2
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2,753,316	-				+0.5
2,753,318	+				-0.9
2,753,318	+				-1.1
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2,753,318	+				-2.1
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2,753,360	-				-1.6
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