Strain Fitness in Sphingobium sp. HT1-2 around GFF2721

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,744,876	+		GFF2720	0.68	+0.3
2,744,876	+		GFF2720	0.68	-1.7
2,744,876	+		GFF2720	0.68	-0.3
2,744,876	+		GFF2720	0.68	-0.6
2,744,876	-		GFF2720	0.68	-0.5
2,744,884	-		GFF2720	0.68	-0.4
2,744,884	-		GFF2720	0.68	+0.7
2,744,923	+		GFF2720	0.70	-0.6
2,744,923	+		GFF2720	0.70	-2.0
2,744,933	+		GFF2720	0.70	-1.2
2,744,956	-		GFF2720	0.71	-0.6
2,744,956	-		GFF2720	0.71	+0.9
2,744,975	+		GFF2720	0.71	-1.3
2,744,975	+		GFF2720	0.71	+1.2
2,744,980	+		GFF2720	0.72	-0.2
2,744,981	-		GFF2720	0.72	+0.8
2,744,981	-		GFF2720	0.72	-1.4
2,744,983	-		GFF2720	0.72	-0.7
2,744,997	+		GFF2720	0.72	-1.8
2,744,997	+		GFF2720	0.72	+0.3
2,745,003	+		GFF2720	0.72	-1.3
2,745,003	+		GFF2720	0.72	-0.7
2,745,003	+		GFF2720	0.72	-0.9
2,745,003	+		GFF2720	0.72	+1.5
2,745,003	+		GFF2720	0.72	-2.5
2,745,003	+		GFF2720	0.72	-1.3
2,745,003	+		GFF2720	0.72	-0.7
2,745,003	+		GFF2720	0.72	-0.3
2,745,003	+		GFF2720	0.72	+0.7
2,745,003	+		GFF2720	0.72	-0.5
2,745,006	+		GFF2720	0.72	-0.1
2,745,011	-		GFF2720	0.73	-0.9
2,745,011	-		GFF2720	0.73	-0.7
2,745,011	-		GFF2720	0.73	-0.9
2,745,011	-		GFF2720	0.73	-1.7
2,745,011	-		GFF2720	0.73	-0.7
2,745,013	+		GFF2720	0.73	-1.8
2,745,013	+		GFF2720	0.73	+1.1
2,745,013	+		GFF2720	0.73	-0.8
2,745,014	-		GFF2720	0.73	-0.5
2,745,019	+		GFF2720	0.73	-2.3
2,745,021	-		GFF2720	0.73	-0.1
2,745,021	-		GFF2720	0.73	-0.7
2,745,021	-		GFF2720	0.73	+0.5
2,745,027	-		GFF2720	0.73	-0.9
2,745,027	-		GFF2720	0.73	+0.6
2,745,030	+		GFF2720	0.73	-0.8
2,745,030	+		GFF2720	0.73	-0.8
2,745,030	+		GFF2720	0.73	-1.6
2,745,048	-		GFF2720	0.74	-1.5
2,745,050	+		GFF2720	0.74	-1.8
2,745,058	-		GFF2720	0.74	-0.9
2,745,097	-		GFF2720	0.75	-0.3
2,745,114	+		GFF2720	0.76	-1.6
2,745,121	+		GFF2720	0.76	-1.0
2,745,123	-		GFF2720	0.76	-0.8
2,745,127	+		GFF2720	0.76	+1.3
2,745,129	-		GFF2720	0.76	-1.7
2,745,135	-		GFF2720	0.77	-1.3
2,745,149	+		GFF2720	0.77	+0.0
2,745,157	-		GFF2720	0.77	-1.3
2,745,195	-		GFF2720	0.79	+0.3
2,745,252	-		GFF2720	0.80	-1.0
2,745,255	+		GFF2720	0.81	+1.2
2,745,261	-		GFF2720	0.81	+1.3
2,745,263	-		GFF2720	0.81	-0.3
2,745,265	+		GFF2720	0.81	-3.1
2,745,273	-		GFF2720	0.81	-0.6
2,745,284	+		GFF2720	0.82	+1.3
2,745,292	-		GFF2720	0.82	+0.3
2,745,296	+		GFF2720	0.82	-0.4
2,745,303	+		GFF2720	0.82	-1.8
2,745,304	+		GFF2720	0.82	-0.4
2,745,304	-		GFF2720	0.82	-1.4
2,745,304	-		GFF2720	0.82	-0.8
2,745,304	-		GFF2720	0.82	+1.1
2,745,304	-		GFF2720	0.82	-0.4
2,745,304	-		GFF2720	0.82	-1.6
2,745,309	+		GFF2720	0.82	-1.6
2,745,316	-		GFF2720	0.83	-0.4
2,745,321	-		GFF2720	0.83	-0.6
2,745,321	-		GFF2720	0.83	+0.2
2,745,333	-		GFF2720	0.83	-0.3
2,745,354	+		GFF2720	0.84	+0.5
2,745,354	+		GFF2720	0.84	-0.1
2,745,354	+		GFF2720	0.84	-1.9
2,745,362	-		GFF2720	0.84	-0.7
2,745,362	-		GFF2720	0.84	-1.6
2,745,362	-		GFF2720	0.84	-0.3
2,745,362	-		GFF2720	0.84	+1.7
2,745,368	+		GFF2720	0.84	+0.3
2,745,378	+		GFF2720	0.85	-2.1
2,745,386	+		GFF2720	0.85	-0.3
2,745,386	-		GFF2720	0.85	-0.5
2,745,386	-		GFF2720	0.85	-0.8
2,745,386	-		GFF2720	0.85	-1.6
2,745,405	+		GFF2720	0.85	+1.5
2,745,406	+		GFF2720	0.85	+1.2
2,745,413	-		GFF2720	0.86	-0.3
2,745,414	-		GFF2720	0.86	-0.5
2,745,420	-		GFF2720	0.86	-1.1
2,745,429	+		GFF2720	0.86	-0.3
2,745,437	+		GFF2720	0.86	-0.9
2,745,437	-		GFF2720	0.86	+0.0
2,745,437	-		GFF2720	0.86	-1.6
2,745,441	+		GFF2720	0.87	-0.5
2,745,444	-		GFF2720	0.87	+0.6
2,745,449	-		GFF2720	0.87	-0.2
2,745,451	+		GFF2720	0.87	+1.8
2,745,456	+		GFF2720	0.87	-1.8
2,745,456	-		GFF2720	0.87	-0.6
2,745,461	+		GFF2720	0.87	-1.3
2,745,461	+		GFF2720	0.87	-0.6
2,745,461	+		GFF2720	0.87	-1.1
2,745,469	+		GFF2720	0.88	-1.6
2,745,469	-		GFF2720	0.88	-0.1
2,745,469	-		GFF2720	0.88	-0.8
2,745,469	-		GFF2720	0.88	-0.0
2,745,469	-		GFF2720	0.88	-1.6
2,745,469	-		GFF2720	0.88	-1.0
2,745,479	-		GFF2720	0.88	-0.2
2,745,489	-		GFF2720	0.88	-0.8
2,745,503	-		GFF2720	0.89	-0.8
2,745,540	+		GFF2720	0.90	-0.6
2,745,543	-		GFF2720	0.90	-1.5
2,745,546	-				-0.5
2,745,546	-				+0.1
2,745,546	-				-1.3
2,745,548	-				-1.1
2,745,563	+				-0.0
2,745,630	-				+0.2
2,745,650	+				-0.1
2,745,663	+				-0.8
2,745,674	+				-1.3
2,745,674	+				+0.8
2,745,701	+				-1.4
2,745,702	-				-0.7
2,745,706	+				-2.2
2,745,706	+				-1.6
2,745,706	+				+0.2
2,745,709	-				+0.5
2,745,714	-				-0.4
2,745,714	-				-0.7
2,745,717	+				+0.6
2,745,720	-				+0.1
2,745,727	+				+0.2
2,745,739	+				-1.5
2,745,762	+				+0.1
2,745,771	-				+1.3
2,745,779	-				+2.7
2,745,781	+				-0.1
2,745,781	+				-1.9
2,745,781	+				+0.7
2,745,789	-				-0.5
2,745,789	-				+0.2
2,745,791	+				-1.0
2,745,791	+				-0.4
2,745,791	+				-1.4
2,745,791	+				-0.4
2,745,791	+				-1.3
2,745,791	+				+0.5
2,745,794	-				+0.8
2,745,799	-				-2.4
2,745,812	+				+0.8
2,745,812	+				-0.4
2,745,819	+				+0.0
2,745,820	-				+0.6
2,745,820	-				-0.7
2,745,865	+				+1.5
2,745,865	+				-1.1
2,745,878	+				+1.3
2,745,931	+				-0.6
2,745,935	+				+0.4
2,745,941	+				-0.3
2,745,943	-				+0.6
2,745,944	-				+0.9
2,745,944	-				-0.3
2,745,966	+				+0.3
2,745,975	-		GFF2721	0.11	+0.8
2,745,975	-		GFF2721	0.11	-0.4
2,745,983	+		GFF2721	0.11	-1.2
2,745,989	+		GFF2721	0.12	+0.9
2,745,991	-		GFF2721	0.12	-1.0
2,746,002	-		GFF2721	0.13	-0.3
2,746,003	+		GFF2721	0.13	-0.5
2,746,003	+		GFF2721	0.13	-1.0
2,746,013	+		GFF2721	0.14	-0.9
2,746,013	-		GFF2721	0.14	-0.3
2,746,019	-		GFF2721	0.15	-0.4
2,746,028	+		GFF2721	0.15	-1.4
2,746,034	-		GFF2721	0.16	+0.2
2,746,034	-		GFF2721	0.16	-0.8
2,746,034	-		GFF2721	0.16	-1.9
2,746,034	-		GFF2721	0.16	+1.3
2,746,055	-		GFF2721	0.18	-0.6
2,746,061	-		GFF2721	0.18	+0.8
2,746,068	+		GFF2721	0.19	-1.4
2,746,081	-		GFF2721	0.20	-0.5
2,746,081	-		GFF2721	0.20	-1.3
2,746,087	-		GFF2721	0.21	-1.7
2,746,094	-		GFF2721	0.21	-0.3
2,746,102	-		GFF2721	0.22	-0.0
2,746,208	+		GFF2721	0.32	-0.4
2,746,215	+		GFF2721	0.32	+0.1
2,746,216	-		GFF2721	0.33	+0.5
2,746,216	-		GFF2721	0.33	+1.1
2,746,220	+		GFF2721	0.33	-1.4
2,746,228	-		GFF2721	0.34	+0.4
2,746,228	-		GFF2721	0.34	+0.2
2,746,236	+		GFF2721	0.34	+0.5
2,746,237	+		GFF2721	0.34	-0.4
2,746,237	+		GFF2721	0.34	-0.5
2,746,237	+		GFF2721	0.34	-1.7
2,746,307	+		GFF2721	0.41	-0.4
2,746,307	+		GFF2721	0.41	-0.7
2,746,319	-		GFF2721	0.42	-1.3
2,746,324	-		GFF2721	0.42	+0.3
2,746,326	-		GFF2721	0.43	+1.0
2,746,357	-		GFF2721	0.45	-1.2
2,746,359	+		GFF2721	0.46	+0.8
2,746,359	+		GFF2721	0.46	-1.6
2,746,367	-		GFF2721	0.46	-0.5
2,746,367	-		GFF2721	0.46	+0.7
2,746,378	+		GFF2721	0.47	-0.6
2,746,388	+		GFF2721	0.48	-1.9
2,746,388	+		GFF2721	0.48	-0.7
2,746,388	+		GFF2721	0.48	+0.3
2,746,388	+		GFF2721	0.48	+0.1
2,746,388	+		GFF2721	0.48	-1.3
2,746,388	+		GFF2721	0.48	-0.8
2,746,388	+		GFF2721	0.48	+0.9
2,746,388	+		GFF2721	0.48	-0.5
2,746,388	+		GFF2721	0.48	-0.4
2,746,388	+		GFF2721	0.48	-1.2
2,746,388	+		GFF2721	0.48	-0.5
2,746,388	+		GFF2721	0.48	-0.8
2,746,388	+		GFF2721	0.48	-1.3
2,746,388	+		GFF2721	0.48	+2.4
2,746,396	-		GFF2721	0.49	+0.5
2,746,396	-		GFF2721	0.49	+0.3
2,746,396	-		GFF2721	0.49	+0.4
2,746,396	-		GFF2721	0.49	+0.3
2,746,396	-		GFF2721	0.49	+0.1
2,746,396	-		GFF2721	0.49	-1.0
2,746,396	-		GFF2721	0.49	-1.4
2,746,396	-		GFF2721	0.49	-0.4
2,746,396	-		GFF2721	0.49	-1.1
2,746,396	-		GFF2721	0.49	-0.1
2,746,409	-		GFF2721	0.50	-2.1
2,746,414	+		GFF2721	0.50	+0.4
2,746,414	-		GFF2721	0.50	+0.4
2,746,422	-		GFF2721	0.51	-1.1
2,746,430	+		GFF2721	0.52	+1.0
2,746,467	+		GFF2721	0.55	-0.0
2,746,467	+		GFF2721	0.55	-2.2
2,746,475	-		GFF2721	0.56	-0.4
2,746,475	-		GFF2721	0.56	+0.6
2,746,475	-		GFF2721	0.56	-1.6
2,746,477	+		GFF2721	0.56	-0.8
2,746,482	+		GFF2721	0.57	-2.1
2,746,482	+		GFF2721	0.57	+0.3
2,746,490	-		GFF2721	0.57	-0.9
2,746,490	-		GFF2721	0.57	-0.2
2,746,490	-		GFF2721	0.57	-1.1
2,746,495	-		GFF2721	0.58	+0.4
2,746,527	-		GFF2721	0.61	-1.1
2,746,556	-		GFF2721	0.63	+0.4
2,746,566	-		GFF2721	0.64	+1.5
2,746,566	-		GFF2721	0.64	-0.0
2,746,577	+		GFF2721	0.65	-1.1
2,746,581	+		GFF2721	0.66	-1.4
2,746,581	+		GFF2721	0.66	-0.7
2,746,586	+		GFF2721	0.66	-0.6
2,746,586	+		GFF2721	0.66	-2.0
2,746,586	+		GFF2721	0.66	-0.8
2,746,586	+		GFF2721	0.66	-0.1
2,746,587	-		GFF2721	0.66	-0.4
2,746,589	-		GFF2721	0.66	+0.7
2,746,589	-		GFF2721	0.66	-0.3
2,746,589	-		GFF2721	0.66	+0.4
2,746,651	+		GFF2721	0.72	-0.7
2,746,651	+		GFF2721	0.72	-0.4
2,746,659	-		GFF2721	0.73	-0.5
2,746,671	+		GFF2721	0.74	-0.8
2,746,678	-		GFF2721	0.74	+0.7
2,746,678	-		GFF2721	0.74	+0.4
2,746,687	+		GFF2721	0.75	-1.4
2,746,700	-		GFF2721	0.76	-1.1
2,746,742	-		GFF2721	0.80	+0.4
2,746,747	-		GFF2721	0.81	-0.4
2,746,810	+		GFF2721	0.86	+0.6
2,746,829	+		GFF2721	0.88	-1.6
2,746,837	-		GFF2721	0.89	-0.7
2,746,853	+				+0.5
2,746,853	+				-0.1
2,746,855	+				-0.5
2,746,871	-				-0.3
2,746,871	-				-0.4
2,746,871	-				-0.5
2,746,886	+				-1.5
2,746,886	+				-1.3
2,746,889	-				+0.2
2,746,894	-				+0.1
2,746,894	-				-0.3
2,746,894	-				-1.1
2,746,894	-				-0.4
2,746,894	-				-1.8
2,746,896	-				+0.1
2,746,905	+				-1.3
2,746,911	-				-0.4
2,746,911	-				-0.9
2,746,919	-				-1.1
2,746,921	+				-0.4
2,746,939	+				-0.1
2,746,939	+				-1.3
2,746,947	-				-0.6
2,746,947	-				-1.2
2,746,954	+				-1.1
2,746,956	-				-0.9
2,746,960	+				-0.6
2,746,960	+				+0.5
2,746,960	+				-1.7
2,746,960	+				-0.9
2,746,960	+				+1.7
2,746,960	+				-1.8
2,746,960	+				+0.4
2,746,965	+				-0.3
2,746,968	-				-0.8
2,746,968	-				-0.8
2,746,968	-				-1.8
2,746,968	-				-0.4
2,746,968	-				-0.8
2,746,968	-				-2.0
2,746,968	-				-0.6
2,746,968	-				-0.4
2,746,973	-				+2.0
2,746,973	-				+0.5
2,746,973	-				-0.0
2,746,973	-				+0.5
2,746,991	-				+0.7
2,747,063	+				+0.3
2,747,070	+				+0.7
2,747,075	-				+0.1
2,747,080	-				+0.8
2,747,087	+				-2.0
2,747,087	+				-1.3
2,747,095	-				+2.3
2,747,095	-				-0.7
2,747,095	-				-1.4
2,747,132	+		GFF2722	0.12	+0.5
2,747,137	+		GFF2722	0.12	-1.6
2,747,137	+		GFF2722	0.12	-1.4
2,747,145	-		GFF2722	0.13	-0.6
2,747,145	-		GFF2722	0.13	-0.1
2,747,145	-		GFF2722	0.13	-0.8
2,747,145	-		GFF2722	0.13	-1.3
2,747,145	-		GFF2722	0.13	-0.3
2,747,159	+		GFF2722	0.14	-1.0
2,747,163	+		GFF2722	0.15	+0.0
2,747,186	+		GFF2722	0.17	-2.6
2,747,186	+		GFF2722	0.17	-2.1
2,747,186	+		GFF2722	0.17	-1.8
2,747,189	-		GFF2722	0.17	+0.5
2,747,194	-		GFF2722	0.18	-0.3
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