Strain Fitness in Sphingobium sp. HT1-2 around GFF2567

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,582,281	+				-0.8
2,582,284	-				-0.8
2,582,354	-				-0.7
2,582,376	+				-0.5
2,582,381	+				-1.1
2,582,392	+				-1.8
2,582,396	+				+0.1
2,582,400	-				-0.4
2,582,404	-				-1.5
2,582,445	-				+0.3
2,582,449	-				-0.4
2,582,473	+		GFF2566	0.12	-0.3
2,582,533	-		GFF2566	0.20	-1.8
2,582,533	-		GFF2566	0.20	+0.7
2,582,539	-		GFF2566	0.21	-0.5
2,582,541	-		GFF2566	0.21	+0.1
2,582,564	+		GFF2566	0.24	-0.3
2,582,564	+		GFF2566	0.24	+0.2
2,582,564	-		GFF2566	0.24	+1.0
2,582,572	-		GFF2566	0.25	+0.3
2,582,574	+		GFF2566	0.25	-1.8
2,582,574	+		GFF2566	0.25	-2.6
2,582,574	+		GFF2566	0.25	-0.0
2,582,574	+		GFF2566	0.25	-0.3
2,582,574	+		GFF2566	0.25	+0.5
2,582,577	-		GFF2566	0.26	-0.5
2,582,579	+		GFF2566	0.26	-0.8
2,582,579	+		GFF2566	0.26	-2.5
2,582,582	-		GFF2566	0.26	-1.5
2,582,582	-		GFF2566	0.26	-0.4
2,582,582	-		GFF2566	0.26	-1.2
2,582,587	-		GFF2566	0.27	-2.2
2,582,620	+		GFF2566	0.31	-0.5
2,582,628	-		GFF2566	0.32	-0.0
2,582,724	+		GFF2566	0.44	-0.7
2,582,732	-		GFF2566	0.45	-1.4
2,582,742	-		GFF2566	0.46	-1.6
2,582,752	-		GFF2566	0.48	+0.2
2,582,781	-		GFF2566	0.51	-0.9
2,582,789	+		GFF2566	0.52	-0.7
2,582,804	+		GFF2566	0.54	-0.2
2,582,830	+		GFF2566	0.58	-1.7
2,582,838	-		GFF2566	0.59	+1.0
2,582,840	-		GFF2566	0.59	-1.9
2,582,840	-		GFF2566	0.59	-2.4
2,582,840	-		GFF2566	0.59	-1.0
2,582,863	+		GFF2566	0.62	-0.5
2,582,886	-		GFF2566	0.65	-0.0
2,582,906	+		GFF2566	0.67	+2.1
2,582,943	+		GFF2566	0.72	+1.5
2,582,944	+		GFF2566	0.72	+0.0
2,582,944	+		GFF2566	0.72	+0.1
2,582,947	-		GFF2566	0.72	-0.3
2,582,952	-		GFF2566	0.73	-1.4
2,582,952	-		GFF2566	0.73	-0.4
2,582,994	+		GFF2566	0.78	+0.5
2,583,012	+		GFF2566	0.81	+0.0
2,583,020	-		GFF2566	0.82	+1.2
2,583,021	-		GFF2566	0.82	+0.2
2,583,023	-		GFF2566	0.82	-1.7
2,583,038	-		GFF2566	0.84	-0.7
2,583,046	+		GFF2566	0.85	-1.4
2,583,062	+		GFF2566	0.87	+0.2
2,583,064	+		GFF2566	0.87	-1.4
2,583,070	-		GFF2566	0.88	-0.1
2,583,070	-		GFF2566	0.88	+0.1
2,583,070	-		GFF2566	0.88	-0.2
2,583,070	-		GFF2566	0.88	+0.9
2,583,094	-				-0.8
2,583,094	-				+0.1
2,583,112	+				+1.9
2,583,179	+				+0.4
2,583,208	-				-0.0
2,583,235	+				+0.5
2,583,264	+				+1.2
2,583,272	-				-0.2
2,583,277	-				-0.8
2,583,277	-				+0.1
2,583,290	-				+0.4
2,583,345	+				+0.2
2,583,345	+				-0.5
2,583,345	+				-1.5
2,583,349	+		GFF2567	0.10	+0.0
2,583,353	-		GFF2567	0.11	-0.2
2,583,355	+		GFF2567	0.11	+0.1
2,583,367	+		GFF2567	0.12	+0.5
2,583,397	-		GFF2567	0.16	-0.2
2,583,431	+		GFF2567	0.20	-0.3
2,583,468	+		GFF2567	0.24	+0.5
2,583,471	-		GFF2567	0.24	+0.5
2,583,498	-		GFF2567	0.27	-0.5
2,583,500	+		GFF2567	0.28	-0.2
2,583,500	+		GFF2567	0.28	+1.1
2,583,500	+		GFF2567	0.28	-0.9
2,583,500	+		GFF2567	0.28	+0.2
2,583,508	-		GFF2567	0.29	-1.3
2,583,508	-		GFF2567	0.29	-1.5
2,583,508	-		GFF2567	0.29	-0.9
2,583,508	-		GFF2567	0.29	+0.7
2,583,508	-		GFF2567	0.29	+0.3
2,583,508	-		GFF2567	0.29	-0.6
2,583,513	-		GFF2567	0.29	-0.7
2,583,529	-		GFF2567	0.31	-0.7
2,583,530	+		GFF2567	0.31	-0.4
2,583,567	+		GFF2567	0.35	+0.5
2,583,916	-		GFF2567	0.76	+1.5
2,583,920	+		GFF2567	0.76	-0.7
2,583,938	+		GFF2567	0.78	+1.2
2,583,938	+		GFF2567	0.78	+2.0
2,583,938	+		GFF2567	0.78	+1.4
2,583,938	+		GFF2567	0.78	+0.4
2,583,938	+		GFF2567	0.78	+0.1
2,583,946	-		GFF2567	0.79	-1.4
2,583,980	+		GFF2567	0.83	-0.5
2,583,985	+		GFF2567	0.84	+0.9
2,583,988	-		GFF2567	0.84	-1.3
2,583,993	-		GFF2567	0.85	-0.2
2,583,993	-		GFF2567	0.85	+0.9
2,583,993	-		GFF2567	0.85	-1.9
2,584,006	-		GFF2567	0.86	-0.3
2,584,047	+				+1.3
2,584,047	+				-0.2
2,584,055	-				+0.5
2,584,056	+				+1.2
2,584,094	-				-1.8
2,584,099	-				+0.3
2,584,104	+				-0.5
2,584,112	+				+0.6
2,584,128	+				+0.1
2,584,138	+				-1.4
2,584,138	+				+0.1
2,584,138	+				+0.7
2,584,141	-				+0.1
2,584,162	-				-0.9
2,584,162	-				-0.5
2,584,162	-				+0.4
2,584,162	-				-0.3
2,584,181	-				+1.8
2,584,186	-				-1.6
2,584,211	+				-0.3
2,584,211	+				+0.1
2,584,211	+				+0.4
2,584,219	-		GFF2568	0.10	-1.0
2,584,219	-		GFF2568	0.10	+1.1
2,584,219	-		GFF2568	0.10	-0.5
2,584,219	-		GFF2568	0.10	-2.3
2,584,219	-		GFF2568	0.10	+0.8
2,584,219	-		GFF2568	0.10	-1.2
2,584,219	-		GFF2568	0.10	+0.3
2,584,221	-		GFF2568	0.11	-0.3
2,584,247	-		GFF2568	0.14	-1.3
2,584,316	+		GFF2568	0.21	-0.4
2,584,319	-		GFF2568	0.21	-0.4
2,584,326	+		GFF2568	0.22	-1.4
2,584,338	+		GFF2568	0.23	-0.1
2,584,343	-		GFF2568	0.24	-0.4
2,584,353	+		GFF2568	0.25	+0.4
2,584,367	+		GFF2568	0.27	+0.1
2,584,375	-		GFF2568	0.28	+0.1
2,584,390	+		GFF2568	0.29	+1.2
2,584,392	+		GFF2568	0.29	-0.7
2,584,420	+		GFF2568	0.32	-0.6
2,584,459	+		GFF2568	0.37	-1.4
2,584,496	+		GFF2568	0.41	+0.4
2,584,502	+		GFF2568	0.41	-1.3
2,584,504	-		GFF2568	0.42	+0.5
2,584,510	-		GFF2568	0.42	+0.0
2,584,519	+		GFF2568	0.43	+1.5
2,584,643	+		GFF2568	0.57	-0.7
2,584,658	-		GFF2568	0.58	+0.5
2,584,716	-		GFF2568	0.65	-0.5
2,584,738	+		GFF2568	0.67	-0.9
2,584,755	+		GFF2568	0.69	+1.5
2,584,820	+		GFF2568	0.76	+1.5
2,584,820	+		GFF2568	0.76	-1.3
2,584,838	-		GFF2568	0.78	-0.5
2,584,853	+		GFF2568	0.80	+2.3
2,584,861	-		GFF2568	0.81	+0.4
2,584,866	-		GFF2568	0.81	+1.0
2,584,866	-		GFF2568	0.81	-1.1
2,584,888	+		GFF2568	0.84	-0.2
2,584,888	+		GFF2568	0.84	+0.1
2,584,893	+		GFF2568	0.84	-0.2
2,584,914	-		GFF2568	0.86	-0.8
2,584,936	-		GFF2568	0.89	-0.5
2,584,969	-				+0.0
2,585,012	+				+1.0
2,585,012	+				+0.0
2,585,020	-				-0.6
2,585,020	-				+0.4
2,585,039	-				-0.8
2,585,063	+				+0.9
2,585,063	+				-0.5
2,585,063	+				+0.2
2,585,063	+				+0.2
2,585,063	+				-0.4
2,585,068	+				+2.0
2,585,068	+				+1.2
2,585,071	-				-0.9
2,585,074	+				-0.3
2,585,082	-				-0.5
2,585,086	+				-1.3
2,585,086	+				-0.5
2,585,086	+				-1.0
2,585,086	+				-0.8
2,585,086	+				+0.3
2,585,086	+				+1.9
2,585,086	+				-0.4
2,585,086	+				-0.9
2,585,091	+				-0.5
2,585,094	-		GFF2569	0.10	+0.4
2,585,094	-		GFF2569	0.10	-2.1
2,585,094	-		GFF2569	0.10	-1.0
2,585,107	+		GFF2569	0.13	-0.1
2,585,107	+		GFF2569	0.13	+0.3