Strain Fitness in Sphingobium sp. HT1-2 around GFF2498

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,518,790	-		GFF2496	0.84	-0.6
2,518,790	-		GFF2496	0.84	+2.2
2,518,790	-		GFF2496	0.84	+0.9
2,518,812	-		GFF2496	0.86	-1.6
2,518,817	-		GFF2496	0.87	+0.1
2,518,817	-		GFF2496	0.87	-0.2
2,518,817	-		GFF2496	0.87	-1.0
2,518,819	+		GFF2496	0.87	+0.2
2,518,827	-		GFF2496	0.88	-0.5
2,518,860	+				+0.1
2,518,860	+				-0.3
2,518,860	+				-0.7
2,518,860	+				-0.2
2,518,868	-				+0.5
2,518,868	-				-1.0
2,518,868	-				-1.0
2,518,868	-				+0.6
2,518,868	-				-1.7
2,518,919	+				-2.4
2,518,953	-				-1.5
2,518,961	-				-1.6
2,518,963	-				+0.4
2,518,964	+				+0.7
2,518,985	+				-0.2
2,518,985	+				+0.1
2,518,988	-				-0.2
2,518,990	+				+0.8
2,519,014	-				-1.2
2,519,026	+				-1.3
2,519,034	-				-0.2
2,519,050	+				-1.3
2,519,058	-				-2.1
2,519,109	+				+0.7
2,519,126	+		GFF2497	0.11	+0.5
2,519,126	+		GFF2497	0.11	-1.4
2,519,126	+		GFF2497	0.11	-1.7
2,519,128	+		GFF2497	0.11	-1.1
2,519,134	-		GFF2497	0.12	-0.3
2,519,134	-		GFF2497	0.12	-0.8
2,519,134	-		GFF2497	0.12	-1.2
2,519,136	-		GFF2497	0.12	-1.5
2,519,136	-		GFF2497	0.12	-1.8
2,519,136	-		GFF2497	0.12	-0.8
2,519,136	-		GFF2497	0.12	+0.5
2,519,136	-		GFF2497	0.12	-1.1
2,519,136	-		GFF2497	0.12	-0.5
2,519,136	-		GFF2497	0.12	+0.8
2,519,145	+		GFF2497	0.13	+0.4
2,519,153	-		GFF2497	0.14	+0.2
2,519,153	-		GFF2497	0.14	-0.3
2,519,167	-		GFF2497	0.16	+1.2
2,519,170	-		GFF2497	0.17	-1.0
2,519,175	+		GFF2497	0.17	+0.3
2,519,200	+		GFF2497	0.21	-0.5
2,519,200	+		GFF2497	0.21	-1.7
2,519,200	+		GFF2497	0.21	+0.0
2,519,206	+		GFF2497	0.22	-0.2
2,519,206	-		GFF2497	0.22	+1.2
2,519,208	-		GFF2497	0.22	-0.7
2,519,208	-		GFF2497	0.22	-1.1
2,519,213	-		GFF2497	0.23	+0.2
2,519,216	+		GFF2497	0.23	-1.2
2,519,216	+		GFF2497	0.23	-0.5
2,519,230	+		GFF2497	0.25	-2.2
2,519,230	+		GFF2497	0.25	-0.6
2,519,230	+		GFF2497	0.25	-0.1
2,519,230	+		GFF2497	0.25	-0.6
2,519,230	+		GFF2497	0.25	+1.4
2,519,230	+		GFF2497	0.25	-0.7
2,519,238	-		GFF2497	0.26	+0.8
2,519,238	-		GFF2497	0.26	+0.1
2,519,238	-		GFF2497	0.26	+0.5
2,519,242	+		GFF2497	0.27	-0.6
2,519,242	+		GFF2497	0.27	-1.6
2,519,250	-		GFF2497	0.28	-1.3
2,519,250	-		GFF2497	0.28	+0.7
2,519,250	-		GFF2497	0.28	-1.9
2,519,250	-		GFF2497	0.28	-1.2
2,519,264	-		GFF2497	0.30	+1.7
2,519,266	+		GFF2497	0.30	+0.3
2,519,284	-		GFF2497	0.32	+0.3
2,519,302	+		GFF2497	0.35	+0.1
2,519,302	+		GFF2497	0.35	-0.4
2,519,310	-		GFF2497	0.36	-1.2
2,519,310	-		GFF2497	0.36	-1.4
2,519,344	-		GFF2497	0.40	-1.5
2,519,344	-		GFF2497	0.40	-1.3
2,519,348	-		GFF2497	0.41	-0.5
2,519,349	-		GFF2497	0.41	-0.8
2,519,353	-		GFF2497	0.42	+0.5
2,519,388	+		GFF2497	0.46	-1.5
2,519,388	+		GFF2497	0.46	-0.3
2,519,388	+		GFF2497	0.46	-0.9
2,519,396	-		GFF2497	0.47	-2.1
2,519,396	-		GFF2497	0.47	+1.0
2,519,401	-		GFF2497	0.48	-0.2
2,519,424	-		GFF2497	0.51	-0.6
2,519,434	-		GFF2497	0.53	-1.2
2,519,441	+		GFF2497	0.54	-0.4
2,519,449	-		GFF2497	0.55	+0.5
2,519,461	+		GFF2497	0.56	+0.5
2,519,461	+		GFF2497	0.56	-1.3
2,519,461	+		GFF2497	0.56	+1.7
2,519,461	+		GFF2497	0.56	-0.2
2,519,461	+		GFF2497	0.56	+0.7
2,519,461	+		GFF2497	0.56	+0.5
2,519,461	+		GFF2497	0.56	+0.2
2,519,461	+		GFF2497	0.56	-1.2
2,519,461	+		GFF2497	0.56	-1.8
2,519,461	+		GFF2497	0.56	-1.2
2,519,469	-		GFF2497	0.57	-1.5
2,519,469	-		GFF2497	0.57	+1.4
2,519,469	-		GFF2497	0.57	+0.5
2,519,469	-		GFF2497	0.57	-0.4
2,519,469	-		GFF2497	0.57	+1.2
2,519,469	-		GFF2497	0.57	-0.5
2,519,469	-		GFF2497	0.57	-1.3
2,519,469	-		GFF2497	0.57	+0.6
2,519,469	-		GFF2497	0.57	-1.2
2,519,469	-		GFF2497	0.57	+1.0
2,519,469	-		GFF2497	0.57	-2.1
2,519,474	-		GFF2497	0.58	+1.0
2,519,476	-		GFF2497	0.58	-1.5
2,519,479	+		GFF2497	0.59	-0.1
2,519,479	+		GFF2497	0.59	-0.4
2,519,479	+		GFF2497	0.59	-0.7
2,519,479	+		GFF2497	0.59	+1.8
2,519,487	-		GFF2497	0.60	-0.5
2,519,487	-		GFF2497	0.60	-1.7
2,519,487	-		GFF2497	0.60	+0.2
2,519,492	-		GFF2497	0.60	-0.7
2,519,506	-		GFF2497	0.62	-0.6
2,519,577	+		GFF2497	0.72	+0.1
2,519,582	+		GFF2497	0.73	-1.9
2,519,582	+		GFF2497	0.73	+0.6
2,519,590	-		GFF2497	0.74	-0.2
2,519,595	+		GFF2497	0.74	+1.6
2,519,601	+		GFF2497	0.75	+1.1
2,519,602	+		GFF2497	0.75	-1.2
2,519,602	+		GFF2497	0.75	-0.6
2,519,602	+		GFF2497	0.75	+1.1
2,519,612	+		GFF2497	0.77	+0.4
2,519,612	+		GFF2497	0.77	-0.0
2,519,627	+		GFF2497	0.79	+0.3
2,519,686	+		GFF2497	0.87	-2.2
2,519,701	+		GFF2497	0.89	-0.8
2,519,703	+		GFF2497	0.89	-1.0
2,519,714	-				+0.2
2,519,793	+				+0.0
2,519,803	+				-0.9
2,519,803	+				-0.8
2,519,806	-				+0.2
2,519,811	-				-0.5
2,519,811	-				+0.3
2,519,811	-				-1.0
2,519,819	-				+0.3
2,519,822	-				-1.0
2,521,830	+				+0.1
2,521,844	+				-1.5
2,521,845	+				+1.1
2,521,853	+				-1.0
2,521,853	+				+1.8
2,521,853	+				+0.3
2,521,853	+				-0.3
2,521,854	+				-0.2
2,521,861	-				-0.5
2,521,861	-				+0.3
2,521,875	+				-0.4
2,521,877	+				+0.7
2,521,881	+				-0.3
2,521,882	+				-1.3
2,521,889	-				+1.0
2,521,890	-				+0.3
2,521,904	-				-0.4
2,521,912	+				-0.7
2,521,922	+				-1.0
2,521,927	+				-0.8
2,521,930	-				-0.1
2,521,930	-				+0.5
2,521,940	+				-1.2
2,521,947	-				+0.8
2,521,948	-				-0.6
2,521,948	-				+1.8
2,521,955	+				-1.8
2,521,955	+				-0.7
2,521,955	+				-2.8
2,521,955	+				-1.2
2,521,963	-				+0.4
2,521,980	+				-1.6
2,521,980	+				-1.9
2,521,981	-				-1.6
2,521,988	-				+0.6
2,522,001	+				-0.8
2,522,007	-				+0.8
2,522,009	-				+0.2
2,522,009	-				+0.3
2,522,034	-				-1.2
2,522,048	-				+0.8
2,522,050	+				+0.0
2,522,058	-				-1.4
2,522,058	-				-1.1
2,522,060	+				-0.4
2,522,060	+				+0.6
2,522,068	-				-0.7
2,522,083	+		GFF2499	0.11	-0.8
2,522,105	+		GFF2499	0.12	+1.1
2,522,105	+		GFF2499	0.12	-0.7
2,522,105	+		GFF2499	0.12	-1.2
2,522,105	+		GFF2499	0.12	-0.4
2,522,113	-		GFF2499	0.13	-0.9
2,522,113	-		GFF2499	0.13	+0.5
2,522,128	-		GFF2499	0.14	+0.4
2,522,134	-		GFF2499	0.14	-0.1
2,522,141	+		GFF2499	0.14	-2.0
2,522,142	+		GFF2499	0.14	+0.7
2,522,146	+		GFF2499	0.15	-1.0
2,522,146	+		GFF2499	0.15	+0.3
2,522,149	-		GFF2499	0.15	+0.9
2,522,159	+		GFF2499	0.15	+0.5
2,522,159	+		GFF2499	0.15	+1.7
2,522,159	+		GFF2499	0.15	+0.7
2,522,159	+		GFF2499	0.15	-1.2
2,522,159	+		GFF2499	0.15	+0.8
2,522,159	+		GFF2499	0.15	+0.3
2,522,164	+		GFF2499	0.16	-2.4
2,522,167	-		GFF2499	0.16	-0.5
2,522,167	-		GFF2499	0.16	+0.5
2,522,167	-		GFF2499	0.16	-0.1
2,522,167	-		GFF2499	0.16	+0.6
2,522,172	-		GFF2499	0.16	-0.8
2,522,177	-		GFF2499	0.16	+0.9
2,522,181	+		GFF2499	0.17	+0.1
2,522,181	+		GFF2499	0.17	+1.0
2,522,181	+		GFF2499	0.17	+1.6
2,522,181	+		GFF2499	0.17	+0.3
2,522,189	-		GFF2499	0.17	-0.4
2,522,238	-		GFF2499	0.20	-1.1
2,522,244	-		GFF2499	0.20	-1.0
2,522,267	+		GFF2499	0.22	-1.2
2,522,285	+		GFF2499	0.23	-0.2
2,522,285	+		GFF2499	0.23	+0.0
2,522,285	+		GFF2499	0.23	-1.2
2,522,317	+		GFF2499	0.25	-0.3
2,522,325	-		GFF2499	0.25	+1.3
2,522,328	+		GFF2499	0.25	+1.8
2,522,330	+		GFF2499	0.26	+0.4
2,522,330	+		GFF2499	0.26	-1.4
2,522,330	+		GFF2499	0.26	-0.6
2,522,330	+		GFF2499	0.26	+1.4
2,522,338	+		GFF2499	0.26	-0.2
2,522,338	+		GFF2499	0.26	+0.3
2,522,338	-		GFF2499	0.26	-1.5
2,522,338	-		GFF2499	0.26	+0.6
2,522,346	-		GFF2499	0.26	+0.9
2,522,346	-		GFF2499	0.26	+0.6
2,522,346	-		GFF2499	0.26	-0.2
2,522,346	-		GFF2499	0.26	-0.4
2,522,373	-		GFF2499	0.28	-0.8
2,522,455	+		GFF2499	0.33	-0.5
2,522,463	-		GFF2499	0.33	+1.3
2,522,463	-		GFF2499	0.33	-0.5
2,522,474	+		GFF2499	0.34	+0.6
2,522,474	+		GFF2499	0.34	-0.7
2,522,479	+		GFF2499	0.34	-0.9
2,522,479	+		GFF2499	0.34	+0.1
2,522,479	+		GFF2499	0.34	-0.4
2,522,479	+		GFF2499	0.34	-0.9
2,522,482	-		GFF2499	0.35	-0.7
2,522,487	-		GFF2499	0.35	+0.8
2,522,492	-		GFF2499	0.35	+0.4
2,522,499	-		GFF2499	0.36	+0.6
2,522,513	-		GFF2499	0.36	-0.6
2,522,513	-		GFF2499	0.36	-0.5
2,522,513	-		GFF2499	0.36	+1.1
2,522,513	-		GFF2499	0.36	-0.9
2,522,513	-		GFF2499	0.36	+0.4
2,522,520	+		GFF2499	0.37	-0.7
2,522,527	+		GFF2499	0.37	-0.4
2,522,527	+		GFF2499	0.37	-0.4
2,522,535	-		GFF2499	0.38	-1.8
2,522,535	-		GFF2499	0.38	+0.8
2,522,538	+		GFF2499	0.38	-0.9
2,522,538	+		GFF2499	0.38	-0.8
2,522,540	-		GFF2499	0.38	+0.6
2,522,543	+		GFF2499	0.38	-1.1
2,522,550	+		GFF2499	0.39	-0.2
2,522,550	+		GFF2499	0.39	-1.3
2,522,551	-		GFF2499	0.39	-0.4
2,522,555	+		GFF2499	0.39	+0.5
2,522,555	+		GFF2499	0.39	+1.6
2,522,560	+		GFF2499	0.39	-1.0
2,522,560	+		GFF2499	0.39	-1.7
2,522,560	+		GFF2499	0.39	+1.0
2,522,560	+		GFF2499	0.39	+0.8
2,522,560	+		GFF2499	0.39	-0.2
2,522,568	-		GFF2499	0.40	+2.1
2,522,568	-		GFF2499	0.40	-1.5
2,522,568	-		GFF2499	0.40	-0.9
2,522,571	+		GFF2499	0.40	-1.2
2,522,571	+		GFF2499	0.40	-1.2
2,522,584	+		GFF2499	0.41	-0.8
2,522,593	-		GFF2499	0.41	-0.4
2,522,593	-		GFF2499	0.41	-0.2
2,522,631	-		GFF2499	0.43	+0.2
2,522,667	+		GFF2499	0.46	+0.3
2,522,668	+		GFF2499	0.46	-2.4
2,522,668	+		GFF2499	0.46	-0.8
2,522,668	+		GFF2499	0.46	+0.4
2,522,668	+		GFF2499	0.46	-0.4
2,522,668	+		GFF2499	0.46	-1.2
2,522,668	+		GFF2499	0.46	-0.6
2,522,676	-		GFF2499	0.46	-0.5
2,522,676	-		GFF2499	0.46	-1.2
2,522,676	-		GFF2499	0.46	-0.7
2,522,676	-		GFF2499	0.46	-1.3
2,522,676	-		GFF2499	0.46	+0.3
2,522,676	-		GFF2499	0.46	-0.8
2,522,691	-		GFF2499	0.47	-0.6
2,522,698	-		GFF2499	0.47	+0.6
2,522,702	+		GFF2499	0.48	-1.2
2,522,703	+		GFF2499	0.48	+0.3
2,522,706	-		GFF2499	0.48	-0.4
2,522,708	+		GFF2499	0.48	-0.2
2,522,716	-		GFF2499	0.49	+1.4
2,522,716	-		GFF2499	0.49	+0.4
2,522,731	+		GFF2499	0.49	-1.2
2,522,732	+		GFF2499	0.49	-0.5
2,522,739	+		GFF2499	0.50	-1.0
2,522,754	+		GFF2499	0.51	-2.1
2,522,758	+		GFF2499	0.51	+0.6
2,522,758	+		GFF2499	0.51	+0.7
2,522,762	-		GFF2499	0.51	-1.2
2,522,784	+		GFF2499	0.53	-0.3
2,522,786	-		GFF2499	0.53	-0.5
2,522,796	-		GFF2499	0.53	-1.0
2,522,807	+		GFF2499	0.54	-1.1
2,522,815	-		GFF2499	0.54	-1.0
2,522,815	-		GFF2499	0.54	+0.9