Strain Fitness in Sphingobium sp. HT1-2 around GFF2485

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,507,298	-		GFF2484	0.36	-1.2
2,507,298	-		GFF2484	0.36	+1.0
2,507,298	-		GFF2484	0.36	-0.5
2,507,298	-		GFF2484	0.36	-0.6
2,507,298	-		GFF2484	0.36	+1.0
2,507,298	-		GFF2484	0.36	+0.3
2,507,298	-		GFF2484	0.36	-1.3
2,507,298	-		GFF2484	0.36	-1.4
2,507,298	-		GFF2484	0.36	-1.6
2,507,302	-		GFF2484	0.36	-0.9
2,507,305	+		GFF2484	0.36	+0.5
2,507,319	+		GFF2484	0.37	-0.5
2,507,327	-		GFF2484	0.38	-0.1
2,507,329	-		GFF2484	0.38	+0.2
2,507,340	+		GFF2484	0.39	-0.2
2,507,348	-		GFF2484	0.40	-2.3
2,507,351	+		GFF2484	0.40	+0.3
2,507,370	-		GFF2484	0.41	-1.2
2,507,373	+		GFF2484	0.41	-0.5
2,507,382	-		GFF2484	0.42	-1.0
2,507,399	+		GFF2484	0.43	-1.5
2,507,404	+		GFF2484	0.44	-0.9
2,507,419	+		GFF2484	0.45	-1.8
2,507,419	+		GFF2484	0.45	-0.0
2,507,436	+		GFF2484	0.46	-2.2
2,507,444	-		GFF2484	0.47	-1.1
2,507,451	-		GFF2484	0.47	+0.3
2,507,462	-		GFF2484	0.48	+1.0
2,507,462	-		GFF2484	0.48	-0.4
2,507,462	-		GFF2484	0.48	+0.3
2,507,485	+		GFF2484	0.50	-0.7
2,507,531	+		GFF2484	0.53	+0.2
2,507,539	-		GFF2484	0.54	-0.8
2,507,549	-		GFF2484	0.55	+0.3
2,507,562	+		GFF2484	0.56	+0.0
2,507,605	+		GFF2484	0.59	-0.7
2,507,613	-		GFF2484	0.60	+0.5
2,507,622	+		GFF2484	0.60	+0.5
2,507,648	-		GFF2484	0.62	-0.8
2,507,655	-		GFF2484	0.63	+0.7
2,507,656	-		GFF2484	0.63	-0.3
2,507,662	-		GFF2484	0.63	-1.0
2,507,668	+		GFF2484	0.64	-0.9
2,507,674	+		GFF2484	0.64	+0.8
2,507,685	-		GFF2484	0.65	+0.6
2,507,700	+		GFF2484	0.66	+0.0
2,507,714	+		GFF2484	0.67	-1.6
2,507,714	+		GFF2484	0.67	-1.8
2,507,719	+		GFF2484	0.68	-2.2
2,507,719	+		GFF2484	0.68	-1.1
2,507,722	-		GFF2484	0.68	+1.6
2,507,727	-		GFF2484	0.68	+0.4
2,507,727	-		GFF2484	0.68	-0.9
2,507,727	-		GFF2484	0.68	-1.2
2,507,727	-		GFF2484	0.68	+0.0
2,507,744	-		GFF2484	0.70	-0.2
2,507,746	-		GFF2484	0.70	-1.0
2,507,768	+		GFF2484	0.71	-0.1
2,507,777	-		GFF2484	0.72	+1.2
2,507,786	-		GFF2484	0.73	-2.0
2,507,793	-		GFF2484	0.73	+0.5
2,507,795	+		GFF2484	0.74	+0.8
2,507,795	+		GFF2484	0.74	-0.6
2,507,803	-		GFF2484	0.74	-0.3
2,507,803	-		GFF2484	0.74	-2.1
2,507,803	-		GFF2484	0.74	-1.7
2,507,825	+		GFF2484	0.76	-1.1
2,507,831	+		GFF2484	0.76	-1.5
2,507,839	-		GFF2484	0.77	+0.9
2,507,865	+		GFF2484	0.79	+0.0
2,507,865	+		GFF2484	0.79	-0.1
2,507,904	+		GFF2484	0.82	+0.1
2,507,904	+		GFF2484	0.82	-1.1
2,507,904	+		GFF2484	0.82	-1.4
2,507,909	+		GFF2484	0.82	-0.7
2,507,909	+		GFF2484	0.82	-0.6
2,507,912	-		GFF2484	0.82	-0.1
2,507,914	+		GFF2484	0.83	+0.5
2,507,917	-		GFF2484	0.83	-0.4
2,507,917	-		GFF2484	0.83	-0.5
2,507,922	-		GFF2484	0.83	+0.2
2,507,922	-		GFF2484	0.83	+0.7
2,507,922	-		GFF2484	0.83	-1.5
2,507,922	-		GFF2484	0.83	+0.6
2,507,922	-		GFF2484	0.83	-0.1
2,507,927	-		GFF2484	0.84	+1.5
2,507,927	-		GFF2484	0.84	-1.9
2,507,956	-		GFF2484	0.86	+0.2
2,507,969	-		GFF2484	0.87	-1.9
2,508,011	+		GFF2484	0.90	-0.2
2,508,011	+		GFF2484	0.90	-0.7
2,508,019	-				-0.6
2,508,019	-				-1.4
2,508,034	+				+0.5
2,508,036	+				+1.2
2,508,044	-				+0.5
2,508,063	+				+1.4
2,508,085	-				+0.1
2,508,095	+				-1.3
2,508,095	+				+0.5
2,508,095	+				-0.0
2,508,095	+				-0.7
2,508,095	+				-0.2
2,508,095	+				-1.1
2,508,095	+				-1.2
2,508,095	+				+0.6
2,508,095	+				-0.5
2,508,096	-				+0.8
2,508,100	+				-1.0
2,508,100	+				-0.2
2,508,103	-				-1.3
2,508,103	-				-0.6
2,508,103	-				-0.4
2,508,103	-				-1.7
2,508,103	-				+0.3
2,508,103	-				+0.3
2,508,105	+				-1.3
2,508,105	+				-1.0
2,508,108	-				-0.2
2,508,108	-				-2.2
2,508,109	-				+0.6
2,508,113	-				-0.9
2,508,113	-				+0.0
2,508,119	+				+0.3
2,508,119	+				-1.2
2,508,124	+				-0.7
2,508,124	+				-0.7
2,508,127	-				+0.2
2,508,128	+				+0.3
2,508,132	-				-1.1
2,508,132	-				-0.2
2,508,133	+				+1.4
2,508,144	+				+0.3
2,508,147	+				+0.2
2,508,164	+				+0.1
2,508,165	-				-1.3
2,508,165	-				-0.2
2,508,165	-				+0.8
2,508,188	+				-0.7
2,508,238	+				-0.8
2,508,245	-				+0.6
2,508,245	-				-1.0
2,508,264	-				-1.1
2,508,273	-				+0.8
2,508,289	-				-0.2
2,508,308	+				+0.4
2,508,319	+				-1.2
2,508,319	-				-0.7
2,508,327	-				-1.4
2,508,336	+				-1.1
2,508,336	+				-2.4
2,508,341	+				-0.9
2,508,349	-				-1.0
2,508,349	-				+0.1
2,508,349	-				+0.0
2,508,350	+				-0.1
2,508,350	+				-0.8
2,508,351	+				-1.0
2,508,351	+				+0.1
2,508,353	+				-0.7
2,508,353	+				-2.0
2,508,359	-		GFF2485	0.10	-0.1
2,508,373	-		GFF2485	0.12	-0.1
2,508,433	-		GFF2485	0.21	-0.1
2,508,435	-		GFF2485	0.21	-1.4
2,508,443	-		GFF2485	0.22	-0.7
2,508,582	+		GFF2485	0.43	+0.3
2,508,596	+		GFF2485	0.45	-0.2
2,508,604	+		GFF2485	0.46	-1.4
2,508,604	-		GFF2485	0.46	-1.1
2,508,605	-		GFF2485	0.46	+0.3
2,508,606	-		GFF2485	0.46	+1.0
2,508,627	+		GFF2485	0.49	-0.2
2,508,644	+		GFF2485	0.52	+0.5
2,508,668	+		GFF2485	0.55	+0.8
2,508,668	+		GFF2485	0.55	-0.6
2,508,668	+		GFF2485	0.55	+0.2
2,508,676	-		GFF2485	0.57	-1.5
2,508,676	-		GFF2485	0.57	+0.1
2,508,681	-		GFF2485	0.57	-0.9
2,508,683	+		GFF2485	0.58	+0.0
2,508,691	-		GFF2485	0.59	-1.0
2,508,694	+		GFF2485	0.59	+0.3
2,508,694	+		GFF2485	0.59	-2.1
2,508,694	+		GFF2485	0.59	+0.6
2,508,702	-		GFF2485	0.60	-0.4
2,508,714	+		GFF2485	0.62	-0.2
2,508,720	-		GFF2485	0.63	-1.8
2,508,721	+		GFF2485	0.63	+0.3
2,508,733	+		GFF2485	0.65	-0.5
2,508,741	-		GFF2485	0.66	+0.0
2,508,741	-		GFF2485	0.66	-1.0
2,508,751	-		GFF2485	0.68	-1.4
2,508,765	-		GFF2485	0.70	-0.8
2,508,765	-		GFF2485	0.70	-0.9
2,508,766	+		GFF2485	0.70	-0.1
2,508,770	+		GFF2485	0.70	+0.4
2,508,774	-		GFF2485	0.71	-1.2
2,508,778	-		GFF2485	0.72	-1.7
2,508,790	+		GFF2485	0.73	-0.2
2,508,790	+		GFF2485	0.73	-0.5
2,508,790	+		GFF2485	0.73	+0.3
2,508,798	-		GFF2485	0.74	-1.4
2,508,798	-		GFF2485	0.74	-0.5
2,508,801	-		GFF2485	0.75	-1.0
2,508,812	-		GFF2485	0.77	-0.2
2,508,831	-		GFF2485	0.79	+1.1
2,508,831	-		GFF2485	0.79	+1.1
2,508,831	-		GFF2485	0.79	+0.1
2,508,870	+		GFF2485	0.85	-1.1
2,508,878	-		GFF2485	0.86	-0.2
2,508,878	-		GFF2485	0.86	-0.9
2,508,887	+		GFF2485	0.88	-1.1
2,508,895	-		GFF2485	0.89	+0.3
2,508,902	+		GFF2485	0.90	-0.4
2,508,902	+		GFF2485	0.90	+0.7
2,508,902	+		GFF2485	0.90	-1.4
2,508,943	-				+1.1
2,508,975	-				-0.2
2,508,980	-				+0.9
2,508,984	-				-0.4
2,508,984	-				-0.4
2,509,025	+				-1.4
2,509,025	+				+0.4
2,509,033	-				-0.5
2,509,037	+				-0.4
2,509,044	-				-1.2
2,509,046	+				-0.6
2,509,046	+				-2.2
2,509,046	-				-1.5
2,509,047	-				-0.2
2,509,053	+				-0.1
2,509,053	+				-0.4
2,509,053	+				-0.7
2,509,053	+				-0.2
2,509,053	+				+0.4
2,509,061	-				-0.6
2,509,061	-				+0.6
2,509,061	-				+0.3
2,509,061	-				-2.0
2,509,062	+				+0.1
2,509,062	+				-2.0
2,509,070	-				+0.3
2,509,088	+				-1.7
2,509,467	+				-0.4
2,509,472	+				-0.9
2,509,472	+				-0.0
2,509,472	+				+0.2
2,509,472	+				-0.9
2,509,472	+				-0.1
2,509,480	-				-0.5
2,509,480	-				-1.0
2,509,480	-				-0.5
2,509,480	-				+0.2
2,509,518	+				-0.5
2,509,518	+				-0.5
2,509,518	+				+0.1
2,509,518	+				-0.2
2,509,518	+				+1.6
2,509,518	+				+0.1
2,509,518	-				+1.3
2,509,651	+				-1.5