Strain Fitness in Sphingobium sp. HT1-2 around GFF2465

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,488,287	+		GFF2464	0.67	-1.5
2,488,287	+		GFF2464	0.67	+0.1
2,488,287	+		GFF2464	0.67	-0.6
2,488,295	-		GFF2464	0.67	-2.6
2,488,295	-		GFF2464	0.67	+0.6
2,488,295	-		GFF2464	0.67	+0.2
2,488,295	-		GFF2464	0.67	-0.4
2,488,295	-		GFF2464	0.67	-1.9
2,488,333	+		GFF2464	0.69	-0.7
2,488,365	+		GFF2464	0.70	-0.9
2,488,365	+		GFF2464	0.70	+0.6
2,488,373	-		GFF2464	0.70	-2.1
2,488,373	-		GFF2464	0.70	-0.1
2,488,373	-		GFF2464	0.70	-0.0
2,488,377	+		GFF2464	0.70	-1.0
2,488,377	+		GFF2464	0.70	-1.0
2,488,385	-		GFF2464	0.70	-0.6
2,488,418	+		GFF2464	0.72	-1.0
2,488,418	+		GFF2464	0.72	-1.0
2,488,422	-		GFF2464	0.72	-0.8
2,488,426	-		GFF2464	0.72	+0.6
2,488,426	-		GFF2464	0.72	+0.6
2,488,433	+		GFF2464	0.72	-1.7
2,488,433	+		GFF2464	0.72	-1.3
2,488,433	+		GFF2464	0.72	-1.2
2,488,441	-		GFF2464	0.72	+0.3
2,488,456	+		GFF2464	0.73	-0.3
2,488,472	-		GFF2464	0.73	-1.6
2,488,485	+		GFF2464	0.74	-0.5
2,488,490	+		GFF2464	0.74	-1.0
2,488,505	+		GFF2464	0.75	-3.2
2,488,515	+		GFF2464	0.75	-1.4
2,488,516	+		GFF2464	0.75	+0.6
2,488,520	+		GFF2464	0.75	-0.9
2,488,523	-		GFF2464	0.75	+0.7
2,488,524	-		GFF2464	0.75	+1.2
2,488,526	+		GFF2464	0.75	-1.6
2,488,530	-		GFF2464	0.75	-0.5
2,488,558	-		GFF2464	0.76	+1.3
2,488,575	-		GFF2464	0.77	-0.6
2,488,582	+		GFF2464	0.77	-1.4
2,488,622	-		GFF2464	0.79	+0.0
2,488,625	+		GFF2464	0.79	-1.0
2,488,633	-		GFF2464	0.79	-0.9
2,488,633	-		GFF2464	0.79	-0.6
2,488,633	-		GFF2464	0.79	+0.5
2,488,655	+		GFF2464	0.80	-0.1
2,488,678	+		GFF2464	0.80	-0.4
2,488,693	+		GFF2464	0.81	-1.0
2,488,701	-		GFF2464	0.81	-1.7
2,488,749	-		GFF2464	0.83	+1.0
2,488,749	-		GFF2464	0.83	-1.0
2,488,756	+		GFF2464	0.83	-0.2
2,488,793	+		GFF2464	0.84	-1.2
2,488,818	+		GFF2464	0.85	+0.4
2,488,819	+		GFF2464	0.85	-1.3
2,488,819	+		GFF2464	0.85	-0.5
2,488,827	-		GFF2464	0.85	-0.7
2,488,827	-		GFF2464	0.85	+0.9
2,488,827	-		GFF2464	0.85	-0.1
2,488,880	+		GFF2464	0.87	-1.3
2,488,900	+		GFF2464	0.88	-0.6
2,488,971	+				+1.6
2,488,988	-				+1.2
2,489,045	-				+1.0
2,489,106	-				-0.6
2,489,106	-				+0.1
2,489,135	+				-1.2
2,489,142	+				-0.4
2,489,146	-				+0.3
2,489,178	+				-0.5
2,489,181	-				-1.4
2,489,235	+				+1.3
2,489,256	+				+0.6
2,489,265	+				+1.6
2,489,273	-				+0.2
2,489,279	-				-1.6
2,489,279	-				+0.8
2,489,295	-				-0.0
2,489,299	+				-1.9
2,489,300	+				+0.1
2,489,302	-				+0.3
2,489,311	+		GFF2465	0.12	+0.6
2,489,314	-		GFF2465	0.13	-0.3
2,489,358	-		GFF2465	0.28	-1.2
2,489,366	-		GFF2465	0.31	-0.4
2,489,380	+		GFF2465	0.35	+0.5
2,489,397	-		GFF2465	0.41	-1.6
2,489,398	-		GFF2465	0.41	-0.4
2,489,401	-		GFF2465	0.42	-0.6
2,489,439	-		GFF2465	0.55	-0.4
2,489,452	-		GFF2465	0.60	-1.7
2,489,459	-		GFF2465	0.62	-0.2
2,489,460	-		GFF2465	0.62	-1.5
2,489,495	-		GFF2465	0.74	-1.0
2,489,522	-		GFF2465	0.83	-1.1
2,489,522	-		GFF2465	0.83	+0.4
2,489,533	+		GFF2465	0.87	+1.6
2,489,533	+		GFF2465	0.87	-1.0
2,489,538	+		GFF2465	0.89	-0.6
2,489,538	+		GFF2465	0.89	+1.6
2,489,538	+		GFF2465	0.89	+0.4
2,489,541	-		GFF2465	0.90	-1.2
2,489,546	-				+0.1
2,489,546	-				-0.8
2,489,551	-				-1.4
2,489,559	-				-0.4
2,489,586	+				-1.1
2,489,589	-				-0.8
2,489,591	+				-1.0
2,489,591	+				-0.5
2,489,594	-				-0.7
2,489,599	-				+0.3
2,489,599	-				-2.3
2,489,599	-				+0.3
2,489,599	-				+0.1
2,489,599	-				+0.6
2,489,599	-				+0.3
2,489,600	+				-0.9
2,489,600	+				+0.2
2,489,600	+				-0.4
2,489,613	+				-0.7
2,489,613	+				-0.5
2,489,656	+				-1.3
2,489,656	+				-1.9
2,489,656	+				-0.4
2,489,656	+				+0.2
2,489,656	+				+0.6
2,489,656	+				-0.4
2,489,658	+				-0.2
2,489,665	-				-0.4
2,489,665	-				-1.0
2,489,676	+		GFF2466	0.10	+0.0
2,489,732	+		GFF2466	0.18	-1.0
2,489,732	+		GFF2466	0.18	-0.8
2,489,732	+		GFF2466	0.18	+0.6
2,489,732	+		GFF2466	0.18	-1.4
2,489,734	+		GFF2466	0.18	-0.6
2,489,740	-		GFF2466	0.19	-1.0
2,489,740	-		GFF2466	0.19	+1.3
2,489,740	-		GFF2466	0.19	-0.7
2,489,745	-		GFF2466	0.19	+0.6
2,489,745	-		GFF2466	0.19	-2.0
2,489,753	+		GFF2466	0.20	+0.8
2,489,754	+		GFF2466	0.20	+0.4
2,489,761	-		GFF2466	0.21	-0.5
2,489,761	-		GFF2466	0.21	-1.2
2,489,763	-		GFF2466	0.21	-1.2
2,489,765	+		GFF2466	0.22	+0.7
2,489,776	+		GFF2466	0.23	+0.2
2,489,787	+		GFF2466	0.24	+1.3
2,489,795	-		GFF2466	0.26	-1.7
2,489,831	+		GFF2466	0.30	+1.4
2,489,831	+		GFF2466	0.30	-1.4
2,489,871	+		GFF2466	0.35	-0.0
2,489,875	+		GFF2466	0.36	-0.3
2,489,883	-		GFF2466	0.37	-0.6
2,489,889	+		GFF2466	0.37	+1.8
2,489,911	-		GFF2466	0.40	-1.1
2,489,916	-		GFF2466	0.41	-1.2
2,489,917	+		GFF2466	0.41	-0.0
2,489,946	+		GFF2466	0.45	+0.9
2,489,953	+		GFF2466	0.45	-0.8
2,489,956	-		GFF2466	0.46	-1.2
2,489,956	-		GFF2466	0.46	+1.2
2,489,958	+		GFF2466	0.46	+0.3
2,489,961	-		GFF2466	0.46	+0.0
2,489,963	+		GFF2466	0.47	-0.7
2,489,966	-		GFF2466	0.47	-0.2
2,489,966	-		GFF2466	0.47	+0.2
2,489,992	+		GFF2466	0.50	-0.6
2,489,992	+		GFF2466	0.50	-0.4
2,490,010	+		GFF2466	0.53	-2.0
2,490,017	+		GFF2466	0.54	-1.5
2,490,023	+		GFF2466	0.54	-0.2
2,490,023	+		GFF2466	0.54	+1.0
2,490,023	+		GFF2466	0.54	+0.9
2,490,023	+		GFF2466	0.54	+0.6
2,490,023	+		GFF2466	0.54	-1.8
2,490,023	+		GFF2466	0.54	-1.2
2,490,023	+		GFF2466	0.54	-1.5
2,490,023	+		GFF2466	0.54	-0.4
2,490,023	+		GFF2466	0.54	-0.8
2,490,023	+		GFF2466	0.54	+0.5
2,490,023	+		GFF2466	0.54	-1.3
2,490,029	-		GFF2466	0.55	-1.4
2,490,031	-		GFF2466	0.55	-0.2
2,490,031	-		GFF2466	0.55	+0.0
2,490,031	-		GFF2466	0.55	-1.2
2,490,031	-		GFF2466	0.55	-0.5
2,490,031	-		GFF2466	0.55	+0.4
2,490,031	-		GFF2466	0.55	-0.7
2,490,031	-		GFF2466	0.55	+0.6
2,490,031	-		GFF2466	0.55	-0.0
2,490,031	-		GFF2466	0.55	+0.6
2,490,045	-		GFF2466	0.57	-0.5
2,490,046	+		GFF2466	0.57	-1.1
2,490,065	+		GFF2466	0.60	-1.3
2,490,071	-		GFF2466	0.60	-0.4
2,490,095	-		GFF2466	0.63	-0.9
2,490,123	+		GFF2466	0.67	+0.3
2,490,124	+		GFF2466	0.67	+0.9
2,490,129	+		GFF2466	0.68	-2.1
2,490,130	+		GFF2466	0.68	+0.6
2,490,130	-		GFF2466	0.68	+0.0
2,490,163	+		GFF2466	0.72	-1.8
2,490,171	-		GFF2466	0.73	+0.3
2,490,171	-		GFF2466	0.73	-0.7
2,490,202	+		GFF2466	0.77	-1.0
2,490,234	+		GFF2466	0.81	-0.7
2,490,246	+		GFF2466	0.82	-1.4
2,490,266	+		GFF2466	0.85	+0.8
2,490,277	+		GFF2466	0.86	+0.3
2,490,298	+		GFF2466	0.89	+0.8
2,490,298	+		GFF2466	0.89	-0.5
2,490,306	-				-0.3
2,490,306	-				-1.8
2,490,317	+				-2.0
2,490,325	-				-2.2
2,490,332	+				+0.4
2,490,359	-				-0.5
2,490,377	-				+1.3
2,490,422	+				-0.7
2,490,430	-				+0.6
2,490,521	+				+0.8
2,490,541	+				+0.0
2,490,541	+				-0.9
2,490,541	+				-0.4
2,490,549	-				-0.8
2,490,549	-				-0.2
2,490,549	-				+0.5
2,490,549	-				-0.2