Strain Fitness in Sphingobium sp. HT1-2 around GFF2405

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,424,610	-		GFF2404	0.58	-1.4
2,424,620	+		GFF2404	0.59	-0.6
2,424,620	-		GFF2404	0.59	-0.6
2,424,620	-		GFF2404	0.59	-0.4
2,424,621	-		GFF2404	0.59	-0.5
2,424,627	-		GFF2404	0.59	-1.0
2,424,642	+		GFF2404	0.60	-1.9
2,424,642	+		GFF2404	0.60	-1.7
2,424,642	+		GFF2404	0.60	-0.6
2,424,642	+		GFF2404	0.60	-0.2
2,424,642	+		GFF2404	0.60	-1.2
2,424,642	+		GFF2404	0.60	-0.2
2,424,642	+		GFF2404	0.60	-1.3
2,424,642	+		GFF2404	0.60	-2.6
2,424,642	+		GFF2404	0.60	-0.6
2,424,650	-		GFF2404	0.60	-1.8
2,424,674	-		GFF2404	0.61	-1.7
2,424,674	-		GFF2404	0.61	+0.4
2,424,717	-		GFF2404	0.63	-1.0
2,424,754	-		GFF2404	0.65	-1.9
2,424,789	-		GFF2404	0.67	-0.9
2,424,802	+		GFF2404	0.67	-1.0
2,424,802	+		GFF2404	0.67	-1.1
2,424,810	-		GFF2404	0.68	-2.0
2,424,815	+		GFF2404	0.68	-2.6
2,424,825	-		GFF2404	0.68	-0.9
2,424,827	-		GFF2404	0.68	-0.5
2,424,860	+		GFF2404	0.70	-1.2
2,424,860	+		GFF2404	0.70	-1.3
2,424,862	-		GFF2404	0.70	-1.4
2,424,868	-		GFF2404	0.70	-2.2
2,424,873	-		GFF2404	0.71	-1.3
2,424,883	+		GFF2404	0.71	-0.8
2,424,883	+		GFF2404	0.71	-2.7
2,424,891	-		GFF2404	0.71	-1.2
2,424,940	+		GFF2404	0.74	-0.7
2,424,940	+		GFF2404	0.74	-0.5
2,424,941	+		GFF2404	0.74	-0.4
2,424,967	-		GFF2404	0.75	-0.6
2,425,038	-		GFF2404	0.78	-0.2
2,425,104	+		GFF2404	0.81	-2.1
2,425,104	+		GFF2404	0.81	-1.2
2,425,104	+		GFF2404	0.81	-0.7
2,425,104	+		GFF2404	0.81	-1.0
2,425,104	+		GFF2404	0.81	-1.4
2,425,104	+		GFF2404	0.81	-2.4
2,425,104	+		GFF2404	0.81	-2.4
2,425,104	+		GFF2404	0.81	-1.7
2,425,104	+		GFF2404	0.81	-2.2
2,425,112	-		GFF2404	0.81	-1.8
2,425,112	-		GFF2404	0.81	-1.1
2,425,112	-		GFF2404	0.81	-1.5
2,425,163	-		GFF2404	0.84	-0.4
2,425,168	-		GFF2404	0.84	-0.9
2,425,173	-		GFF2404	0.84	-2.4
2,425,193	+		GFF2404	0.85	-0.6
2,425,193	+		GFF2404	0.85	-0.8
2,425,229	+		GFF2404	0.87	-1.6
2,425,229	+		GFF2404	0.87	-0.8
2,425,229	+		GFF2404	0.87	-0.7
2,425,229	+		GFF2404	0.87	-1.8
2,425,229	+		GFF2404	0.87	-0.7
2,425,229	+		GFF2404	0.87	-1.4
2,425,229	+		GFF2404	0.87	-0.8
2,425,229	+		GFF2404	0.87	-2.0
2,425,237	-		GFF2404	0.87	-1.0
2,425,237	-		GFF2404	0.87	-1.4
2,425,237	-		GFF2404	0.87	-1.4
2,425,311	+				-0.7
2,425,311	+				-1.2
2,425,336	-				-1.0
2,425,353	+				-1.3
2,425,353	+				-0.2
2,425,356	-				-1.2
2,425,361	-				-0.8
2,425,361	-				-0.5
2,425,361	-				-1.3
2,425,361	-				-0.5
2,425,412	+				-0.6
2,425,415	-				-2.1
2,425,468	+				-0.4
2,425,481	+				-0.8
2,425,487	-				-0.4
2,425,502	-				-0.6
2,425,509	+				-0.5
2,425,509	+				-0.7
2,425,528	+				-0.5
2,425,533	+				+0.2
2,425,536	-				-1.2
2,425,570	+				-0.8
2,425,578	-				-0.4
2,425,578	-				-0.5
2,425,578	-				+0.4
2,425,578	-				+1.4
2,425,608	+				-0.3
2,425,655	-		GFF2405	0.11	-0.8
2,425,762	+		GFF2405	0.34	-1.8
2,425,762	+		GFF2405	0.34	-1.5
2,425,800	+		GFF2405	0.42	+0.6
2,425,800	+		GFF2405	0.42	+0.1
2,425,800	+		GFF2405	0.42	-0.5
2,425,808	-		GFF2405	0.43	-0.5
2,425,822	+		GFF2405	0.46	-0.2
2,425,822	+		GFF2405	0.46	-2.3
2,425,822	+		GFF2405	0.46	-1.3
2,425,822	+		GFF2405	0.46	-0.2
2,425,822	+		GFF2405	0.46	-0.3
2,425,822	+		GFF2405	0.46	-1.6
2,425,822	+		GFF2405	0.46	-0.3
2,425,822	+		GFF2405	0.46	-0.6
2,425,830	-		GFF2405	0.48	+0.0
2,425,830	-		GFF2405	0.48	+1.0
2,425,830	-		GFF2405	0.48	+0.0
2,425,830	-		GFF2405	0.48	-1.7
2,425,830	-		GFF2405	0.48	-1.8
2,425,830	-		GFF2405	0.48	-0.4
2,425,830	-		GFF2405	0.48	-2.4
2,425,830	-		GFF2405	0.48	-0.8
2,425,841	+		GFF2405	0.50	-1.3
2,425,846	+		GFF2405	0.51	+0.3
2,425,846	+		GFF2405	0.51	-1.3
2,425,846	+		GFF2405	0.51	-2.0
2,425,846	+		GFF2405	0.51	-1.9
2,425,846	+		GFF2405	0.51	+0.8
2,425,846	+		GFF2405	0.51	-0.7
2,425,846	+		GFF2405	0.51	-0.4
2,425,846	+		GFF2405	0.51	-0.0
2,425,846	+		GFF2405	0.51	-0.9
2,425,851	+		GFF2405	0.53	-0.5
2,425,851	+		GFF2405	0.53	-0.7
2,425,851	+		GFF2405	0.53	+0.1
2,425,854	-		GFF2405	0.53	-0.5
2,425,854	-		GFF2405	0.53	-0.2
2,425,854	-		GFF2405	0.53	+0.9
2,425,854	-		GFF2405	0.53	-1.4
2,425,854	-		GFF2405	0.53	-0.0
2,425,854	-		GFF2405	0.53	-0.3
2,425,854	-		GFF2405	0.53	-1.8
2,425,854	-		GFF2405	0.53	-0.0
2,425,854	-		GFF2405	0.53	+0.3
2,425,854	-		GFF2405	0.53	+1.1
2,425,854	-		GFF2405	0.53	-2.0
2,425,859	-		GFF2405	0.54	-0.2
2,425,859	-		GFF2405	0.54	-1.7
2,425,873	+		GFF2405	0.57	-2.0
2,425,878	+		GFF2405	0.58	-0.6
2,425,878	+		GFF2405	0.58	-0.5
2,425,883	+		GFF2405	0.59	-0.2
2,425,883	+		GFF2405	0.59	-0.2
2,425,883	+		GFF2405	0.59	-0.1
2,425,883	+		GFF2405	0.59	-0.2
2,425,883	+		GFF2405	0.59	+0.1
2,425,883	+		GFF2405	0.59	-1.9
2,425,883	+		GFF2405	0.59	-1.5
2,425,883	+		GFF2405	0.59	-1.4
2,425,886	-		GFF2405	0.60	-2.1
2,425,886	-		GFF2405	0.60	-0.1
2,425,886	-		GFF2405	0.60	+0.1
2,425,891	-		GFF2405	0.61	-0.9
2,425,891	-		GFF2405	0.61	+0.0
2,425,891	-		GFF2405	0.61	-0.8
2,425,891	-		GFF2405	0.61	-0.7
2,425,891	-		GFF2405	0.61	-0.5
2,425,892	-		GFF2405	0.61	+1.5
2,425,893	+		GFF2405	0.62	-0.6
2,425,893	+		GFF2405	0.62	-0.2
2,425,898	-		GFF2405	0.63	-0.1
2,425,899	-		GFF2405	0.63	+0.4
2,425,901	-		GFF2405	0.63	-1.5
2,425,903	+		GFF2405	0.64	-0.6
2,425,908	+		GFF2405	0.65	-0.8
2,425,913	+		GFF2405	0.66	-2.0
2,425,913	+		GFF2405	0.66	-0.9
2,425,921	-		GFF2405	0.68	-0.6
2,425,921	-		GFF2405	0.68	+0.1
2,425,939	+		GFF2405	0.71	-1.0
2,425,942	-		GFF2405	0.72	-0.2
2,425,945	+		GFF2405	0.73	+0.5
2,425,949	+		GFF2405	0.74	-1.1
2,425,961	+		GFF2405	0.76	-0.7
2,426,000	-		GFF2405	0.84	-1.1
2,426,012	+		GFF2405	0.87	-1.2
2,426,020	-		GFF2405	0.89	-0.5
2,426,028	+				-0.5
2,426,054	+				-0.5
2,426,054	+				-0.8
2,426,062	-				-1.0
2,426,062	-				+1.6
2,426,062	-				+0.4
2,426,062	-				-0.1
2,426,062	-				-1.6
2,426,062	-				-1.0
2,426,062	-				-0.6
2,426,081	-				-0.9
2,426,096	+				-1.3
2,426,101	+				-1.2
2,426,108	-				-0.5
2,426,109	-				-0.2
2,426,158	+				-0.0
2,426,158	+				-0.2
2,426,158	+				+0.6
2,426,158	+				-1.1
2,426,158	+				+0.9
2,426,158	+				-1.9
2,426,158	+				-0.2
2,426,158	+				-0.6
2,426,158	+				-1.5
2,426,158	+				+1.1
2,426,158	+				-1.2
2,426,158	+				-0.3
2,426,158	+				-1.0
2,426,166	-				-0.6
2,426,166	-				+1.5
2,426,166	-				+0.1
2,426,166	-				-1.5
2,426,166	-				-1.3
2,426,166	-				-2.0
2,426,166	-				+0.0
2,426,166	-				-0.1
2,426,166	-				+0.9
2,426,166	-				-2.2
2,426,166	-				-3.0
2,426,166	-				-0.3
2,426,166	-				-1.1
2,426,166	-				+1.1
2,426,166	-				-1.0
2,426,166	-				-0.2
2,426,193	+				+0.2
2,426,212	+				-0.9
2,426,212	+				-0.9
2,426,220	-				-0.0
2,426,258	-				-0.7
2,426,262	-				-0.6
2,426,262	-				+1.0
2,426,298	+				-0.9
2,426,302	-				-0.3
2,426,312	-				-0.4
2,426,312	-				-1.0
2,426,312	-				-0.5
2,426,376	+		GFF2406	0.11	-1.3
2,426,376	+		GFF2406	0.11	-0.2
2,426,384	-		GFF2406	0.12	+0.2
2,426,384	-		GFF2406	0.12	-1.6
2,426,428	-		GFF2406	0.14	-1.6
2,426,428	-		GFF2406	0.14	-0.2
2,426,443	-		GFF2406	0.15	-0.9
2,426,454	+		GFF2406	0.16	-1.6
2,426,462	-		GFF2406	0.16	-0.1
2,426,492	-		GFF2406	0.18	+0.2
2,426,497	-		GFF2406	0.18	-0.6
2,426,497	-		GFF2406	0.18	-1.0
2,426,497	-		GFF2406	0.18	+0.1
2,426,520	-		GFF2406	0.20	+0.1
2,426,543	-		GFF2406	0.21	-1.1
2,426,560	-		GFF2406	0.22	-0.0
2,426,571	-		GFF2406	0.23	-1.7
2,426,575	-		GFF2406	0.23	-1.0
2,426,576	-		GFF2406	0.23	-0.4
2,426,576	-		GFF2406	0.23	+0.3
2,426,577	+		GFF2406	0.23	-1.2
2,426,619	+		GFF2406	0.26	-0.3
2,426,637	+		GFF2406	0.27	-1.1
2,426,640	-		GFF2406	0.27	-1.0
2,426,642	+		GFF2406	0.27	+0.1
2,426,695	-		GFF2406	0.30	-1.0
2,426,774	-		GFF2406	0.35	-0.4
2,426,789	+		GFF2406	0.36	-0.8
2,426,803	-		GFF2406	0.37	+0.5
2,426,859	+		GFF2406	0.40	-1.0
2,426,864	-		GFF2406	0.40	-1.5
2,426,873	+		GFF2406	0.41	-0.7
2,426,873	+		GFF2406	0.41	-0.2
2,426,873	+		GFF2406	0.41	-1.0
2,426,873	-		GFF2406	0.41	+0.2
2,426,881	+		GFF2406	0.41	-1.6
2,426,896	+		GFF2406	0.42	+0.4
2,426,896	+		GFF2406	0.42	+0.1
2,426,910	+		GFF2406	0.43	-0.5
2,426,922	+		GFF2406	0.44	-0.5
2,426,930	-		GFF2406	0.44	-0.4
2,426,943	-		GFF2406	0.45	-0.2
2,426,945	+		GFF2406	0.45	-0.0
2,426,950	+		GFF2406	0.45	+0.7
2,426,950	+		GFF2406	0.45	-0.4
2,426,950	+		GFF2406	0.45	+1.3
2,426,950	+		GFF2406	0.45	-0.4
2,426,950	+		GFF2406	0.45	-1.2
2,426,950	+		GFF2406	0.45	-0.6
2,426,958	-		GFF2406	0.46	+0.0
2,426,963	+		GFF2406	0.46	-1.0
2,426,963	+		GFF2406	0.46	+0.8
2,426,980	+		GFF2406	0.47	-1.8
2,426,982	+		GFF2406	0.47	-0.7
2,427,002	+		GFF2406	0.49	+0.3
2,427,008	+		GFF2406	0.49	-1.4
2,427,015	-		GFF2406	0.49	-0.5
2,427,023	+		GFF2406	0.50	-2.0
2,427,023	+		GFF2406	0.50	-1.0
2,427,026	-		GFF2406	0.50	+0.2
2,427,031	-		GFF2406	0.50	-0.5
2,427,031	-		GFF2406	0.50	-1.4
2,427,031	-		GFF2406	0.50	-1.2
2,427,036	-		GFF2406	0.51	-1.6
2,427,039	+		GFF2406	0.51	-0.7
2,427,046	-		GFF2406	0.51	-0.5
2,427,051	-		GFF2406	0.51	+0.8