Strain Fitness in Sphingobium sp. HT1-2 around GFF2395

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,414,681	-		GFF2393	0.27	-0.6
2,414,685	+		GFF2393	0.28	-0.9
2,414,689	-		GFF2393	0.28	-0.5
2,414,690	+		GFF2393	0.28	-1.5
2,414,690	+		GFF2393	0.28	-0.8
2,414,690	+		GFF2393	0.28	+0.1
2,414,692	+		GFF2393	0.29	+0.5
2,414,693	-		GFF2393	0.29	+0.3
2,414,693	-		GFF2393	0.29	+0.9
2,414,705	-		GFF2393	0.30	-1.1
2,414,733	-		GFF2393	0.34	+1.0
2,414,734	-		GFF2393	0.34	-0.2
2,414,744	+		GFF2393	0.35	-2.2
2,414,766	-		GFF2393	0.37	+0.4
2,414,766	-		GFF2393	0.37	-1.1
2,414,766	-		GFF2393	0.37	-0.6
2,414,766	-		GFF2393	0.37	+0.5
2,414,772	-		GFF2393	0.38	-0.5
2,414,783	+		GFF2393	0.39	-1.0
2,414,783	+		GFF2393	0.39	-2.0
2,414,791	-		GFF2393	0.40	-1.0
2,414,798	-		GFF2393	0.41	-1.9
2,414,803	-		GFF2393	0.42	-0.2
2,414,840	+		GFF2393	0.46	-0.5
2,414,914	+		GFF2393	0.55	+0.1
2,414,914	+		GFF2393	0.55	-0.2
2,414,975	+		GFF2393	0.62	+0.3
2,414,981	+		GFF2393	0.63	-2.0
2,414,985	+		GFF2393	0.63	-0.3
2,414,993	-		GFF2393	0.64	-1.1
2,415,008	-		GFF2393	0.66	+0.0
2,415,012	-		GFF2393	0.67	-0.5
2,415,016	+		GFF2393	0.67	-0.5
2,415,016	+		GFF2393	0.67	-1.1
2,415,016	+		GFF2393	0.67	+1.3
2,415,028	+		GFF2393	0.68	-1.0
2,415,034	+		GFF2393	0.69	-0.4
2,415,058	-		GFF2393	0.72	-0.0
2,415,072	+		GFF2393	0.74	-2.0
2,415,072	+		GFF2393	0.74	-2.5
2,415,079	+		GFF2393	0.74	-0.4
2,415,079	+		GFF2393	0.74	+0.3
2,415,079	+		GFF2393	0.74	+1.0
2,415,080	-		GFF2393	0.75	-2.3
2,415,087	-		GFF2393	0.75	-0.5
2,415,094	-		GFF2393	0.76	-0.9
2,415,096	+		GFF2393	0.76	-0.2
2,415,159	+		GFF2393	0.84	-1.9
2,415,195	+		GFF2393	0.88	-0.2
2,415,195	+		GFF2393	0.88	+0.2
2,415,195	+		GFF2393	0.88	-1.5
2,415,198	-		GFF2393	0.89	-0.5
2,415,203	-		GFF2393	0.89	-0.0
2,415,203	-		GFF2393	0.89	-0.8
2,415,203	-		GFF2393	0.89	-0.4
2,415,203	-		GFF2393	0.89	+0.2
2,415,203	-		GFF2393	0.89	-0.5
2,415,203	-		GFF2393	0.89	+1.3
2,415,297	-				+0.0
2,415,297	-				+0.4
2,415,302	+				+0.2
2,415,311	+				-1.4
2,415,311	+				-1.3
2,415,311	+				-0.4
2,415,323	-				-1.0
2,415,333	-				+0.8
2,415,346	+				+0.6
2,415,369	+				-0.3
2,415,376	+				-1.3
2,415,376	+				-0.3
2,415,377	+				-1.4
2,415,378	-				-1.0
2,415,378	-				-0.6
2,415,378	-				-1.1
2,415,384	-		GFF2394	0.11	-0.4
2,415,391	-		GFF2394	0.17	-0.8
2,415,391	-		GFF2394	0.17	-0.6
2,415,391	-		GFF2394	0.17	+1.2
2,415,391	-		GFF2394	0.17	-1.0
2,415,426	-		GFF2394	0.47	-0.7
2,415,431	-		GFF2394	0.52	-0.1
2,415,450	-		GFF2394	0.68	-1.5
2,415,468	+		GFF2394	0.84	-0.6
2,415,486	+				-0.4
2,415,486	+				-1.0
2,415,488	-				-1.0
2,415,489	-				-0.1
2,415,491	+				-0.0
2,415,494	-				-0.9
2,415,494	-				+0.8
2,415,494	-				+0.2
2,415,494	-				-1.0
2,415,494	-				-0.7
2,415,494	-				+0.0
2,415,499	-				+0.6
2,415,499	-				-1.0
2,415,500	-				+1.6
2,415,502	-				-1.5
2,415,504	-				+0.8
2,415,504	-				-0.8
2,415,515	+				+0.7
2,415,543	+				-0.7
2,415,559	+				+1.1
2,415,579	+				-1.2
2,415,579	+				+0.5
2,415,592	-				+0.2
2,415,618	+				-1.3
2,415,618	+				+0.9
2,415,618	+				-0.7
2,415,618	+				-1.6
2,415,626	-				+0.0
2,415,628	+				-1.9
2,415,628	+				-0.5
2,415,628	+				-0.0
2,415,628	-				+0.4
2,415,642	+				+1.3
2,415,652	+				-1.3
2,415,660	+				+0.2
2,415,660	-				-1.5
2,415,668	-				+1.3
2,415,669	+				-0.4
2,415,673	-				-0.8
2,415,684	+				-0.5
2,415,684	+				-0.5
2,415,684	+				-0.2
2,415,684	+				-1.0
2,415,704	+				-0.0
2,415,706	+				-1.0
2,415,714	-				-0.4
2,415,734	+				-0.6
2,415,734	+				-1.7
2,415,747	-				+0.3
2,415,747	-				-0.6
2,415,752	-				-1.0
2,415,752	-				-0.5
2,415,772	-				-1.0
2,415,794	+		GFF2395	0.11	-0.2
2,415,820	+		GFF2395	0.13	-0.4
2,415,820	+		GFF2395	0.13	-0.0
2,415,828	-		GFF2395	0.14	-0.6
2,415,849	+		GFF2395	0.16	-1.3
2,415,857	-		GFF2395	0.17	+1.2
2,415,857	-		GFF2395	0.17	+0.8
2,415,857	-		GFF2395	0.17	-0.7
2,415,865	+		GFF2395	0.17	+1.2
2,415,900	-		GFF2395	0.20	-1.2
2,415,905	-		GFF2395	0.21	-0.4
2,415,916	+		GFF2395	0.22	-1.0
2,415,922	+		GFF2395	0.22	+1.8
2,415,924	+		GFF2395	0.22	-0.6
2,415,924	-		GFF2395	0.22	+0.2
2,415,924	-		GFF2395	0.22	-1.0
2,415,924	-		GFF2395	0.22	-0.2
2,415,926	+		GFF2395	0.23	-0.5
2,415,940	-		GFF2395	0.24	-0.1
2,415,940	-		GFF2395	0.24	+0.9
2,415,941	+		GFF2395	0.24	-0.2
2,415,945	+		GFF2395	0.24	-1.4
2,415,945	+		GFF2395	0.24	+1.2
2,415,945	+		GFF2395	0.24	+2.5
2,415,945	+		GFF2395	0.24	+1.0
2,415,945	+		GFF2395	0.24	-1.0
2,415,945	+		GFF2395	0.24	-1.2
2,415,945	+		GFF2395	0.24	-0.9
2,415,945	+		GFF2395	0.24	-0.9
2,415,945	+		GFF2395	0.24	+0.6
2,415,945	+		GFF2395	0.24	+0.5
2,415,945	+		GFF2395	0.24	+0.1
2,415,945	+		GFF2395	0.24	-0.9
2,415,947	+		GFF2395	0.24	-1.2
2,415,953	-		GFF2395	0.25	-0.9
2,415,953	-		GFF2395	0.25	-0.5
2,415,953	-		GFF2395	0.25	-0.8
2,415,953	-		GFF2395	0.25	+1.4
2,415,953	-		GFF2395	0.25	-0.8
2,415,953	-		GFF2395	0.25	-1.0
2,415,953	-		GFF2395	0.25	-0.9
2,415,953	-		GFF2395	0.25	-0.5
2,415,970	-		GFF2395	0.26	+0.2
2,416,013	-		GFF2395	0.30	+0.5
2,416,025	-		GFF2395	0.31	-0.2
2,416,032	+		GFF2395	0.32	-0.6
2,416,032	+		GFF2395	0.32	-1.3
2,416,040	-		GFF2395	0.33	+0.2
2,416,040	-		GFF2395	0.33	-0.5
2,416,109	+		GFF2395	0.39	-0.8
2,416,119	+		GFF2395	0.39	+1.4
2,416,119	+		GFF2395	0.39	-1.6
2,416,119	+		GFF2395	0.39	-0.5
2,416,127	-		GFF2395	0.40	-0.8
2,416,127	-		GFF2395	0.40	+0.3
2,416,127	-		GFF2395	0.40	+0.0
2,416,138	+		GFF2395	0.41	-2.0
2,416,146	-		GFF2395	0.42	-1.0
2,416,170	-		GFF2395	0.44	-0.6
2,416,176	+		GFF2395	0.44	-1.6
2,416,178	+		GFF2395	0.45	-1.0
2,416,186	-		GFF2395	0.45	+0.1
2,416,186	-		GFF2395	0.45	-0.5
2,416,186	-		GFF2395	0.45	+0.4
2,416,193	+		GFF2395	0.46	-1.0
2,416,198	-		GFF2395	0.46	+0.1
2,416,201	-		GFF2395	0.47	-0.4
2,416,214	-		GFF2395	0.48	+0.3
2,416,221	+		GFF2395	0.48	-0.8
2,416,221	+		GFF2395	0.48	-1.3
2,416,229	-		GFF2395	0.49	+1.3
2,416,229	-		GFF2395	0.49	-0.6
2,416,229	-		GFF2395	0.49	-0.8
2,416,230	-		GFF2395	0.49	-0.5
2,416,230	-		GFF2395	0.49	+0.2
2,416,230	-		GFF2395	0.49	+1.2
2,416,240	+		GFF2395	0.50	-1.5
2,416,252	+		GFF2395	0.51	-0.0
2,416,308	-		GFF2395	0.56	-1.0
2,416,331	+		GFF2395	0.58	-1.0
2,416,339	-		GFF2395	0.59	-0.0
2,416,339	-		GFF2395	0.59	+0.0
2,416,372	-		GFF2395	0.62	-0.8
2,416,382	+		GFF2395	0.62	+0.9
2,416,390	-		GFF2395	0.63	+0.8
2,416,390	-		GFF2395	0.63	-0.6
2,416,390	-		GFF2395	0.63	-0.3
2,416,404	-		GFF2395	0.64	-0.8
2,416,406	-		GFF2395	0.64	+0.5
2,416,418	+		GFF2395	0.66	+0.7
2,416,467	+		GFF2395	0.70	-1.6
2,416,477	-		GFF2395	0.71	+1.3
2,416,493	+		GFF2395	0.72	-1.9
2,416,493	+		GFF2395	0.72	+0.7
2,416,493	+		GFF2395	0.72	-0.4
2,416,501	-		GFF2395	0.73	-1.6
2,416,501	-		GFF2395	0.73	-0.3
2,416,501	-		GFF2395	0.73	+0.1
2,416,563	+		GFF2395	0.78	-1.9
2,416,576	+		GFF2395	0.79	+0.8
2,416,581	+		GFF2395	0.80	-0.7
2,416,589	-		GFF2395	0.80	+0.3
2,416,618	+		GFF2395	0.83	-0.8
2,416,638	+		GFF2395	0.85	+0.1
2,416,638	+		GFF2395	0.85	+2.1
2,416,638	+		GFF2395	0.85	+1.5
2,416,646	-		GFF2395	0.85	+0.4
2,416,646	-		GFF2395	0.85	+0.7
2,416,646	-		GFF2395	0.85	+0.8
2,416,684	-		GFF2395	0.89	+0.3
2,416,685	-		GFF2395	0.89	+0.6
2,416,685	-		GFF2395	0.89	-0.1
2,416,700	+				-1.6
2,416,700	+				-1.0
2,416,700	+				-0.3
2,416,700	+				-0.3
2,416,700	+				-1.5
2,416,705	+				+0.0
2,416,705	+				-0.2
2,416,705	+				-0.8
2,416,705	+				-0.2
2,416,708	-				+1.0
2,416,708	-				+0.5
2,416,708	-				-0.2
2,416,708	-				-0.1
2,416,708	-				-0.8
2,416,708	-				-1.0
2,416,708	-				-0.0
2,416,710	+				-1.2
2,416,713	-				-1.5
2,416,713	-				-0.5
2,416,720	-				-0.9
2,416,736	+				-0.4
2,416,736	+				-0.4
2,416,749	-				-1.2
2,416,751	-				-0.4
2,416,762	+				+1.4
2,416,798	+				-0.7
2,416,818	+				-0.4
2,416,818	+				+0.2
2,416,819	+				-0.6
2,416,820	+				-1.0
2,416,820	+				+1.7
2,416,820	+				-0.7
2,416,826	-				-0.9
2,416,828	-				-1.0
2,416,868	+				-1.4
2,416,901	+				+0.9
2,416,928	-				-0.1
2,416,932	+				+1.0
2,416,933	+				-0.5
2,416,933	-				-1.1
2,416,940	-				-2.3
2,416,955	-				-0.6
2,416,967	+				-1.0
2,416,975	-				+0.4
2,417,009	+				-0.7
2,417,041	+				-0.4
2,417,057	-				+0.2
2,417,079	-				-1.5
2,417,111	-				-2.0
2,417,117	+				-1.4
2,417,117	+				-0.6
2,417,117	+				-0.2
2,417,117	+				-1.2
2,417,117	+				-0.7
2,417,117	+				+0.4
2,417,125	-				-1.7
2,417,125	-				+0.0
2,417,125	-				-0.2
2,417,125	-				-1.3
2,417,125	-				+1.8
2,417,125	-				-0.6
2,417,125	-				-0.5
2,417,125	-				-0.2
2,417,125	-				-2.3
2,417,146	-				-0.6
2,417,146	-				+0.2
2,417,154	+				-1.6
2,417,197	-		GFF2396	0.12	-0.3
2,417,213	+		GFF2396	0.13	-1.3
2,417,248	+		GFF2396	0.15	+0.2
2,417,256	-		GFF2396	0.16	+1.1
2,417,262	+		GFF2396	0.16	-1.8
2,417,262	+		GFF2396	0.16	-0.1
2,417,270	-		GFF2396	0.17	-0.7
2,417,270	-		GFF2396	0.17	-0.8
2,417,270	-		GFF2396	0.17	-0.2
2,417,275	-		GFF2396	0.17	-1.0
2,417,286	+		GFF2396	0.18	-1.8
2,417,307	-		GFF2396	0.19	-0.6
2,417,312	-		GFF2396	0.20	-0.5
2,417,312	-		GFF2396	0.20	-0.6
2,417,322	-		GFF2396	0.20	+0.6
2,417,325	-		GFF2396	0.20	-0.8
2,417,344	+		GFF2396	0.22	-2.1
2,417,344	+		GFF2396	0.22	-1.3
2,417,344	+		GFF2396	0.22	-0.2
2,417,344	+		GFF2396	0.22	-0.9
2,417,352	-		GFF2396	0.22	+0.6
2,417,352	-		GFF2396	0.22	-0.5
2,417,352	-		GFF2396	0.22	+1.8
2,417,352	-		GFF2396	0.22	-1.1
2,417,352	-		GFF2396	0.22	-1.2
2,417,373	-		GFF2396	0.24	-0.4
2,417,376	+		GFF2396	0.24	+2.1
2,417,378	+		GFF2396	0.24	-1.0
2,417,385	-		GFF2396	0.24	-0.6
2,417,406	-		GFF2396	0.26	-1.0
2,417,420	-		GFF2396	0.27	-1.1
2,417,430	-		GFF2396	0.27	-0.4
2,417,445	+		GFF2396	0.28	+0.7
2,417,445	+		GFF2396	0.28	+0.0
2,417,445	+		GFF2396	0.28	-0.8
2,417,445	+		GFF2396	0.28	-0.7
2,417,445	+		GFF2396	0.28	-1.5
2,417,445	+		GFF2396	0.28	-0.7
2,417,445	+		GFF2396	0.28	+0.5
2,417,445	+		GFF2396	0.28	+0.2
2,417,453	-		GFF2396	0.29	-1.4
2,417,453	-		GFF2396	0.29	+0.1
2,417,453	-		GFF2396	0.29	-1.2
2,417,453	-		GFF2396	0.29	+0.1
2,417,453	-		GFF2396	0.29	-0.0
2,417,453	-		GFF2396	0.29	-0.8
2,417,453	-		GFF2396	0.29	+0.2
2,417,453	-		GFF2396	0.29	-1.1
2,417,453	-		GFF2396	0.29	-0.1
2,417,453	-		GFF2396	0.29	-0.6
2,417,458	-		GFF2396	0.29	-0.7
2,417,464	+		GFF2396	0.30	-0.7
2,417,471	+		GFF2396	0.30	-1.5
2,417,475	+		GFF2396	0.30	+0.4
2,417,475	+		GFF2396	0.30	+0.5
2,417,475	+		GFF2396	0.30	-0.7
2,417,475	+		GFF2396	0.30	-0.7
2,417,475	+		GFF2396	0.30	-1.0
2,417,480	+		GFF2396	0.31	-1.2
2,417,483	-		GFF2396	0.31	-1.1
2,417,483	-		GFF2396	0.31	-0.6
2,417,488	-		GFF2396	0.31	+1.2
2,417,499	+		GFF2396	0.32	+0.9
2,417,509	+		GFF2396	0.33	+0.8
2,417,513	+		GFF2396	0.33	+1.1
2,417,518	+		GFF2396	0.33	+0.2
2,417,518	+		GFF2396	0.33	-0.0
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