Strain Fitness in Sphingobium sp. HT1-2 around GFF2364

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,384,846	+		GFF2362	0.76	-1.1
2,384,846	-		GFF2362	0.76	+1.5
2,384,852	+		GFF2362	0.76	-1.0
2,384,854	-		GFF2362	0.76	-0.3
2,384,859	-		GFF2362	0.77	-0.5
2,384,967	+		GFF2362	0.86	-1.0
2,384,967	+		GFF2362	0.86	-0.3
2,384,967	+		GFF2362	0.86	+0.8
2,384,967	+		GFF2362	0.86	+0.4
2,384,967	+		GFF2362	0.86	-1.8
2,384,967	+		GFF2362	0.86	-0.2
2,384,967	+		GFF2362	0.86	-0.5
2,384,967	+		GFF2362	0.86	+0.6
2,384,967	+		GFF2362	0.86	+1.6
2,384,968	+		GFF2362	0.86	+0.2
2,384,970	-		GFF2362	0.87	-0.4
2,384,975	-		GFF2362	0.87	+0.2
2,384,975	-		GFF2362	0.87	-0.8
2,384,975	-		GFF2362	0.87	-0.4
2,384,975	-		GFF2362	0.87	+0.3
2,384,975	-		GFF2362	0.87	-1.4
2,384,975	-		GFF2362	0.87	-0.1
2,384,975	-		GFF2362	0.87	+0.6
2,384,997	+		GFF2362	0.89	-0.4
2,385,013	-				-1.5
2,385,047	-				+0.6
2,385,052	-				-0.7
2,385,052	-				-0.7
2,385,052	-				+2.4
2,385,052	-				-0.6
2,385,067	-				-0.3
2,385,100	+				-0.9
2,385,108	-				-0.9
2,385,119	+				-1.8
2,385,119	-				+0.1
2,385,119	-				+0.8
2,385,125	-				-0.3
2,385,126	-				-1.2
2,385,127	-				-0.8
2,385,127	-				-0.5
2,385,166	+				-1.5
2,385,217	+		GFF2363	0.11	-1.4
2,385,225	-		GFF2363	0.12	-0.9
2,385,230	-		GFF2363	0.13	+0.0
2,385,295	-		GFF2363	0.23	-2.1
2,385,297	+		GFF2363	0.23	-0.1
2,385,305	-		GFF2363	0.24	-0.9
2,385,307	+		GFF2363	0.24	+0.6
2,385,307	+		GFF2363	0.24	+0.8
2,385,307	+		GFF2363	0.24	-0.3
2,385,310	-		GFF2363	0.25	-0.6
2,385,315	-		GFF2363	0.26	+0.2
2,385,320	-		GFF2363	0.26	-0.8
2,385,320	-		GFF2363	0.26	+0.9
2,385,320	-		GFF2363	0.26	-1.2
2,385,320	-		GFF2363	0.26	+0.5
2,385,322	+		GFF2363	0.27	-2.7
2,385,397	+		GFF2363	0.38	-1.7
2,385,397	+		GFF2363	0.38	-0.5
2,385,397	+		GFF2363	0.38	-1.2
2,385,397	+		GFF2363	0.38	+0.7
2,385,397	+		GFF2363	0.38	-0.9
2,385,397	+		GFF2363	0.38	-0.3
2,385,397	+		GFF2363	0.38	-1.1
2,385,397	+		GFF2363	0.38	+0.1
2,385,397	+		GFF2363	0.38	-2.0
2,385,402	+		GFF2363	0.38	-2.1
2,385,405	-		GFF2363	0.39	-1.4
2,385,405	-		GFF2363	0.39	-0.1
2,385,405	-		GFF2363	0.39	+0.5
2,385,407	+		GFF2363	0.39	+0.7
2,385,417	+		GFF2363	0.41	-0.8
2,385,422	+		GFF2363	0.41	-2.2
2,385,422	+		GFF2363	0.41	+1.1
2,385,422	+		GFF2363	0.41	+1.0
2,385,432	-		GFF2363	0.43	-0.8
2,385,442	+		GFF2363	0.44	+1.7
2,385,444	+		GFF2363	0.45	-0.1
2,385,444	+		GFF2363	0.45	-0.7
2,385,444	+		GFF2363	0.45	-1.3
2,385,452	-		GFF2363	0.46	+0.2
2,385,452	-		GFF2363	0.46	+0.3
2,385,452	-		GFF2363	0.46	-1.0
2,385,452	-		GFF2363	0.46	-0.4
2,385,452	-		GFF2363	0.46	+0.6
2,385,458	+		GFF2363	0.47	-2.2
2,385,463	+		GFF2363	0.47	-0.5
2,385,468	+		GFF2363	0.48	+0.6
2,385,468	+		GFF2363	0.48	-1.0
2,385,468	+		GFF2363	0.48	-1.6
2,385,472	+		GFF2363	0.49	+1.1
2,385,476	-		GFF2363	0.49	-1.1
2,385,477	+		GFF2363	0.49	+0.6
2,385,490	-		GFF2363	0.51	+0.3
2,385,491	+		GFF2363	0.51	+1.0
2,385,491	+		GFF2363	0.51	+0.6
2,385,491	+		GFF2363	0.51	-1.0
2,385,491	+		GFF2363	0.51	+0.8
2,385,499	-		GFF2363	0.53	-1.9
2,385,499	-		GFF2363	0.53	-0.4
2,385,499	-		GFF2363	0.53	-2.2
2,385,522	+		GFF2363	0.56	-1.1
2,385,522	+		GFF2363	0.56	-1.2
2,385,542	+		GFF2363	0.59	-0.8
2,385,547	+		GFF2363	0.60	-0.4
2,385,564	-		GFF2363	0.62	+0.9
2,385,564	-		GFF2363	0.62	-0.6
2,385,577	+		GFF2363	0.64	+0.1
2,385,577	+		GFF2363	0.64	-1.3
2,385,577	+		GFF2363	0.64	+0.8
2,385,585	-		GFF2363	0.65	-1.3
2,385,585	-		GFF2363	0.65	-0.3
2,385,585	-		GFF2363	0.65	+0.5
2,385,638	+		GFF2363	0.73	+0.5
2,385,646	-		GFF2363	0.74	+0.6
2,385,646	-		GFF2363	0.74	-0.6
2,385,646	-		GFF2363	0.74	-0.9
2,385,647	+		GFF2363	0.74	-0.4
2,385,647	+		GFF2363	0.74	-2.2
2,385,647	+		GFF2363	0.74	-0.6
2,385,654	-		GFF2363	0.76	-0.3
2,385,655	-		GFF2363	0.76	+0.1
2,385,655	-		GFF2363	0.76	-1.3
2,385,655	-		GFF2363	0.76	-0.8
2,385,655	-		GFF2363	0.76	-0.3
2,385,657	+		GFF2363	0.76	+0.7
2,385,665	-		GFF2363	0.77	-0.6
2,385,665	-		GFF2363	0.77	-2.4
2,385,667	+		GFF2363	0.77	-1.1
2,385,667	+		GFF2363	0.77	-0.3
2,385,669	+		GFF2363	0.78	-0.5
2,385,675	-		GFF2363	0.79	-0.6
2,385,675	-		GFF2363	0.79	+0.8
2,385,684	+		GFF2363	0.80	-0.7
2,385,692	+		GFF2363	0.81	+0.2
2,385,692	+		GFF2363	0.81	-1.0
2,385,692	+		GFF2363	0.81	-0.8
2,385,697	+		GFF2363	0.82	-0.4
2,385,697	+		GFF2363	0.82	-0.4
2,385,700	-		GFF2363	0.82	-2.7
2,385,700	-		GFF2363	0.82	-1.3
2,385,711	+		GFF2363	0.84	-0.6
2,385,712	+		GFF2363	0.84	-0.1
2,385,720	-		GFF2363	0.85	-0.6
2,385,727	+		GFF2363	0.86	-0.7
2,385,730	-		GFF2363	0.87	-0.9
2,385,730	-		GFF2363	0.87	-0.3
2,385,730	-		GFF2363	0.87	+0.3
2,385,730	-		GFF2363	0.87	+0.7
2,385,735	-		GFF2363	0.87	-0.1
2,385,757	+				+0.5
2,385,760	+				-1.1
2,385,767	+				-1.4
2,385,803	+				-0.8
2,385,803	+				-0.1
2,385,803	+				-0.3
2,385,803	+				-1.9
2,385,811	-				-2.4
2,385,811	-				+0.1
2,385,811	-				+0.5
2,385,813	+				+0.6
2,385,818	+				-0.9
2,385,821	-				-0.7
2,385,821	-				+0.5
2,385,852	+				-0.3
2,385,859	+				-1.4
2,385,864	-				-0.0
2,385,867	+				-0.5
2,385,869	-				+1.1
2,385,881	+				-0.5
2,385,884	-				-1.3
2,385,890	-				+1.2
2,385,929	+		GFF2364	0.12	-0.4
2,385,932	-		GFF2364	0.13	-0.6
2,385,937	-		GFF2364	0.13	-1.0
2,385,937	-		GFF2364	0.13	+0.0
2,385,966	-		GFF2364	0.17	-0.7
2,385,966	-		GFF2364	0.17	-2.4
2,385,966	-		GFF2364	0.17	+1.1
2,385,966	-		GFF2364	0.17	+0.5
2,385,966	-		GFF2364	0.17	+0.5
2,385,971	-		GFF2364	0.18	-0.4
2,385,999	+		GFF2364	0.21	+0.5
2,386,007	-		GFF2364	0.22	-1.3
2,386,008	+		GFF2364	0.22	-1.4
2,386,009	+		GFF2364	0.22	-0.5
2,386,016	-		GFF2364	0.23	-0.5
2,386,016	-		GFF2364	0.23	-0.9
2,386,017	-		GFF2364	0.23	-1.4
2,386,019	+		GFF2364	0.23	+1.7
2,386,022	+		GFF2364	0.24	+1.5
2,386,027	+		GFF2364	0.24	-0.8
2,386,029	-		GFF2364	0.25	-1.1
2,386,030	-		GFF2364	0.25	+1.1
2,386,034	-		GFF2364	0.25	-0.6
2,386,035	-		GFF2364	0.25	+1.3
2,386,043	+		GFF2364	0.26	-0.8
2,386,048	+		GFF2364	0.27	-1.3
2,386,049	-		GFF2364	0.27	+0.3
2,386,053	+		GFF2364	0.27	-1.2
2,386,053	+		GFF2364	0.27	-0.0
2,386,056	-		GFF2364	0.28	+0.6
2,386,056	-		GFF2364	0.28	-0.1
2,386,061	-		GFF2364	0.28	-1.0
2,386,071	-		GFF2364	0.30	-1.4
2,386,081	+		GFF2364	0.31	+1.5
2,386,081	+		GFF2364	0.31	+0.5
2,386,084	-		GFF2364	0.31	-0.0
2,386,103	+		GFF2364	0.33	-1.3
2,386,110	-		GFF2364	0.34	+0.9
2,386,151	+		GFF2364	0.39	-0.3
2,386,180	+		GFF2364	0.43	+0.0
2,386,181	+		GFF2364	0.43	-0.8
2,386,181	+		GFF2364	0.43	+0.7
2,386,181	+		GFF2364	0.43	-1.0
2,386,181	+		GFF2364	0.43	-1.0
2,386,188	-		GFF2364	0.44	+0.4
2,386,189	-		GFF2364	0.44	-1.5
2,386,206	+		GFF2364	0.46	+1.0
2,386,206	-		GFF2364	0.46	-0.3
2,386,239	-		GFF2364	0.50	+0.5
2,386,261	+		GFF2364	0.53	-2.9
2,386,266	+		GFF2364	0.53	-1.1
2,386,266	+		GFF2364	0.53	-1.0
2,386,266	+		GFF2364	0.53	+0.6
2,386,274	-		GFF2364	0.54	-0.4
2,386,274	-		GFF2364	0.54	-0.0
2,386,321	+		GFF2364	0.60	-0.7
2,386,321	+		GFF2364	0.60	-1.0
2,386,321	+		GFF2364	0.60	-1.4
2,386,324	-		GFF2364	0.60	+0.3
2,386,329	-		GFF2364	0.61	+0.3
2,386,329	-		GFF2364	0.61	-0.9
2,386,340	-		GFF2364	0.62	+0.0
2,386,352	+		GFF2364	0.64	-1.4
2,386,352	+		GFF2364	0.64	+0.2
2,386,352	+		GFF2364	0.64	+0.5
2,386,352	+		GFF2364	0.64	-0.4
2,386,352	+		GFF2364	0.64	-0.3
2,386,352	+		GFF2364	0.64	-0.8
2,386,360	-		GFF2364	0.64	+0.3
2,386,360	-		GFF2364	0.64	+0.4
2,386,360	-		GFF2364	0.64	-1.9
2,386,360	-		GFF2364	0.64	-0.5
2,386,360	-		GFF2364	0.64	+0.6
2,386,360	-		GFF2364	0.64	+0.5
2,386,360	-		GFF2364	0.64	-1.3
2,386,360	-		GFF2364	0.64	-0.8
2,386,360	-		GFF2364	0.64	-1.3
2,386,360	-		GFF2364	0.64	-0.1
2,386,365	-		GFF2364	0.65	-0.5
2,386,365	-		GFF2364	0.65	-0.8
2,386,365	-		GFF2364	0.65	-0.9
2,386,365	-		GFF2364	0.65	-1.7
2,386,365	-		GFF2364	0.65	+0.5
2,386,370	-		GFF2364	0.66	-1.1
2,386,370	-		GFF2364	0.66	+0.5
2,386,370	-		GFF2364	0.66	-1.3
2,386,379	+		GFF2364	0.67	-0.4
2,386,380	-		GFF2364	0.67	-1.0
2,386,385	-		GFF2364	0.68	+1.5
2,386,385	-		GFF2364	0.68	+0.5
2,386,385	-		GFF2364	0.68	-0.4
2,386,387	-		GFF2364	0.68	-0.8
2,386,387	-		GFF2364	0.68	+0.2
2,386,393	-		GFF2364	0.68	-0.0
2,386,405	-		GFF2364	0.70	+0.7
2,386,413	+		GFF2364	0.71	-1.3
2,386,415	+		GFF2364	0.71	+0.0
2,386,415	+		GFF2364	0.71	+0.4
2,386,415	+		GFF2364	0.71	-0.0
2,386,421	-		GFF2364	0.72	+0.5
2,386,421	-		GFF2364	0.72	-2.3
2,386,421	-		GFF2364	0.72	+1.0
2,386,421	-		GFF2364	0.72	-0.3
2,386,421	-		GFF2364	0.72	-1.4
2,386,423	-		GFF2364	0.72	-0.3
2,386,488	+		GFF2364	0.80	-1.0
2,386,496	-		GFF2364	0.81	-0.9
2,386,496	-		GFF2364	0.81	-0.3
2,386,519	+		GFF2364	0.84	+1.1
2,386,519	-		GFF2364	0.84	-1.9
2,386,529	+		GFF2364	0.85	-0.7
2,386,542	+		GFF2364	0.86	-0.9
2,386,542	-		GFF2364	0.86	-0.4
2,386,581	+				+0.1
2,386,584	-				+1.4
2,386,584	-				+0.4
2,386,602	+				-0.3
2,386,604	-				-0.7
2,386,609	+				-0.8
2,386,617	-				-0.4
2,386,623	+				-0.3
2,386,631	-				-1.4
2,386,635	+				+0.4
2,386,635	+				+1.6
2,386,646	+				+0.1
2,386,657	-				+0.5
2,386,657	-				-0.4
2,386,664	+				-1.4
2,386,680	-				-1.4
2,386,696	-				+0.7
2,386,752	+				-0.3
2,386,752	+				+1.5
2,386,752	+				+0.3
2,386,752	+				+0.4
2,386,760	-				+0.6
2,386,760	-				+0.5
2,386,760	-				-1.7
2,386,760	-				-1.9
2,386,760	-				-0.1
2,386,760	-				+0.9
2,386,768	-				+0.4
2,386,777	-				-1.7
2,386,779	+				-0.0
2,386,799	+				+0.4
2,386,799	+				-0.6
2,386,806	+				-1.4
2,386,807	-				-1.1
2,386,814	-				-0.5
2,386,817	+				-1.3
2,386,817	+				-1.3
2,386,817	-				-1.6
2,386,825	-				+0.7
2,386,836	+				+0.3
2,386,836	+				+0.1
2,386,836	+				-0.3
2,386,836	+				-1.7
2,386,836	+				+0.3
2,386,836	+				+1.3
2,386,836	+				-0.7
2,386,844	-				-2.5
2,386,844	-				-1.0
2,386,846	+				-1.8
2,386,846	+				+0.0
2,386,846	+				+1.0
2,386,854	+				-0.4
2,386,877	+				+1.2
2,386,882	-				+0.1
2,386,906	-				-0.5
2,386,946	+		GFF2365	0.11	-0.5
2,386,954	-		GFF2365	0.11	-0.5
2,386,970	+		GFF2365	0.13	-0.1
2,386,975	+		GFF2365	0.13	+2.3
2,386,983	-		GFF2365	0.14	-1.3
2,386,985	+		GFF2365	0.14	-0.5
2,386,990	+		GFF2365	0.14	+0.1
2,386,998	-		GFF2365	0.15	+1.1
2,387,012	+		GFF2365	0.16	-0.4
2,387,032	-		GFF2365	0.18	-1.0
2,387,037	-		GFF2365	0.19	-1.4
2,387,051	+		GFF2365	0.20	-1.2
2,387,053	+		GFF2365	0.20	-1.9
2,387,075	+		GFF2365	0.22	-2.0
2,387,079	-		GFF2365	0.22	+1.6
2,387,092	+		GFF2365	0.24	+0.3
2,387,095	-		GFF2365	0.24	-0.3
2,387,099	+		GFF2365	0.24	-1.4
2,387,115	-		GFF2365	0.26	-0.2
2,387,147	-		GFF2365	0.29	-0.0
2,387,149	+		GFF2365	0.29	+0.3
2,387,169	+		GFF2365	0.31	+1.0
2,387,174	+		GFF2365	0.31	-0.9
2,387,206	+		GFF2365	0.34	-0.1
2,387,225	+		GFF2365	0.36	-0.3
2,387,232	+		GFF2365	0.36	+0.5
2,387,233	-		GFF2365	0.36	-0.1
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