Strain Fitness in Sphingobium sp. HT1-2 around GFF2333

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,357,213	-				-3.1
2,357,215	-				-1.4
2,357,215	-				-1.0
2,357,215	-				-1.2
2,357,215	-				+0.6
2,357,241	+				-1.1
2,357,249	-				+0.6
2,357,249	-				-1.1
2,357,249	-				-0.2
2,357,249	-				-0.8
2,357,249	-				+1.0
2,357,249	-				-2.5
2,357,264	+				+0.4
2,357,290	+		GFF2332	0.11	-1.9
2,357,298	-		GFF2332	0.12	-1.5
2,357,298	-		GFF2332	0.12	-0.3
2,357,299	-		GFF2332	0.12	+0.6
2,357,323	-		GFF2332	0.14	-0.9
2,357,326	+		GFF2332	0.15	-1.5
2,357,326	+		GFF2332	0.15	+0.5
2,357,331	+		GFF2332	0.15	-0.8
2,357,334	-		GFF2332	0.16	-1.0
2,357,348	+		GFF2332	0.17	-0.8
2,357,356	+		GFF2332	0.18	-1.7
2,357,396	-		GFF2332	0.23	-1.3
2,357,409	+		GFF2332	0.24	+1.0
2,357,417	-		GFF2332	0.25	-1.0
2,357,446	+		GFF2332	0.29	-0.0
2,357,462	-		GFF2332	0.30	+0.6
2,357,478	-		GFF2332	0.32	-0.8
2,357,479	+		GFF2332	0.32	-1.1
2,357,483	-		GFF2332	0.33	-0.1
2,357,510	+		GFF2332	0.36	+0.2
2,357,554	+		GFF2332	0.41	+1.1
2,357,554	+		GFF2332	0.41	-1.1
2,357,554	+		GFF2332	0.41	-2.2
2,357,562	-		GFF2332	0.42	-0.9
2,357,562	-		GFF2332	0.42	-1.7
2,357,572	-		GFF2332	0.43	-0.6
2,357,585	+		GFF2332	0.45	-0.7
2,357,585	-		GFF2332	0.45	+1.5
2,357,615	+		GFF2332	0.48	+0.5
2,357,620	+		GFF2332	0.49	-0.1
2,357,620	+		GFF2332	0.49	+1.2
2,357,628	-		GFF2332	0.50	+0.7
2,357,628	-		GFF2332	0.50	+0.4
2,357,633	-		GFF2332	0.50	-1.1
2,357,651	-		GFF2332	0.52	-0.6
2,357,664	+		GFF2332	0.54	-1.2
2,357,680	-		GFF2332	0.56	+0.3
2,357,732	-		GFF2332	0.61	+1.3
2,357,738	+		GFF2332	0.62	-1.8
2,357,742	-		GFF2332	0.63	-2.0
2,357,759	+		GFF2332	0.65	-0.2
2,357,789	-		GFF2332	0.68	-0.4
2,357,789	-		GFF2332	0.68	-1.3
2,357,835	-		GFF2332	0.73	-0.5
2,357,835	-		GFF2332	0.73	-0.2
2,357,840	-		GFF2332	0.74	-1.1
2,357,851	+		GFF2332	0.75	-1.4
2,357,856	+		GFF2332	0.76	-1.2
2,357,859	-		GFF2332	0.76	+1.3
2,357,859	-		GFF2332	0.76	-0.8
2,357,859	-		GFF2332	0.76	-1.1
2,357,859	-		GFF2332	0.76	-0.3
2,357,861	-		GFF2332	0.76	+0.7
2,357,870	-		GFF2332	0.77	-2.1
2,357,878	+		GFF2332	0.78	-1.0
2,357,897	+		GFF2332	0.80	-0.4
2,357,897	+		GFF2332	0.80	-0.8
2,357,897	+		GFF2332	0.80	+1.1
2,357,897	+		GFF2332	0.80	+0.1
2,357,897	+		GFF2332	0.80	-1.2
2,357,897	+		GFF2332	0.80	-0.6
2,357,900	+		GFF2332	0.81	-1.0
2,357,903	+		GFF2332	0.81	-0.6
2,357,904	-		GFF2332	0.81	+1.4
2,357,904	-		GFF2332	0.81	-0.0
2,357,905	-		GFF2332	0.81	-0.3
2,357,905	-		GFF2332	0.81	-0.9
2,357,905	-		GFF2332	0.81	-0.5
2,357,905	-		GFF2332	0.81	-0.8
2,357,905	-		GFF2332	0.81	+1.0
2,357,905	-		GFF2332	0.81	+0.9
2,357,908	+		GFF2332	0.82	-0.5
2,357,908	+		GFF2332	0.82	+2.1
2,357,908	+		GFF2332	0.82	+0.4
2,357,908	-		GFF2332	0.82	+0.3
2,357,911	-		GFF2332	0.82	+0.3
2,357,911	-		GFF2332	0.82	-0.7
2,357,913	+		GFF2332	0.82	-1.8
2,357,913	+		GFF2332	0.82	-1.9
2,357,916	-		GFF2332	0.83	+0.6
2,357,918	+		GFF2332	0.83	-1.8
2,357,921	-		GFF2332	0.83	+0.7
2,357,926	-		GFF2332	0.84	-0.3
2,357,926	-		GFF2332	0.84	-0.6
2,357,926	-		GFF2332	0.84	+0.8
2,357,926	-		GFF2332	0.84	-2.1
2,357,973	-		GFF2332	0.89	-0.2
2,358,009	-				+0.3
2,358,017	-				-0.9
2,358,037	+				-0.3
2,358,037	+				-1.2
2,358,037	+				+1.2
2,358,037	+				-2.1
2,358,042	+				-0.8
2,358,042	+				-0.4
2,358,042	+				-0.3
2,358,045	-				-2.1
2,358,045	-				-1.7
2,358,045	-				-1.1
2,358,045	-				-1.1
2,358,047	+				-1.0
2,358,047	+				+1.3
2,358,047	+				-0.8
2,358,047	+				+0.5
2,358,050	-				-0.3
2,358,050	-				-0.5
2,358,050	-				-0.4
2,358,050	-				-1.9
2,358,050	-				-0.5
2,358,051	+				+0.3
2,358,055	-				-2.1
2,358,059	-				-1.2
2,358,080	+				+0.0
2,358,088	-				-1.3
2,358,101	+				-0.9
2,358,136	-				-0.3
2,358,153	+				-0.9
2,358,158	+				-0.5
2,358,166	-				+0.4
2,358,178	+				-0.7
2,358,183	+				-0.4
2,358,191	-				+0.3
2,358,193	+				-0.7
2,358,218	+				-0.7
2,358,226	-				-1.3
2,358,237	+				-1.1
2,358,244	+				-1.1
2,358,321	+		GFF2333	0.18	-1.0
2,358,331	+		GFF2333	0.19	+0.3
2,358,339	-		GFF2333	0.21	-0.6
2,358,339	-		GFF2333	0.21	+0.3
2,358,347	+		GFF2333	0.22	+0.7
2,358,369	+		GFF2333	0.26	-1.7
2,358,369	+		GFF2333	0.26	-0.3
2,358,374	+		GFF2333	0.26	-1.6
2,358,374	+		GFF2333	0.26	-0.7
2,358,374	+		GFF2333	0.26	-0.9
2,358,374	+		GFF2333	0.26	+1.4
2,358,382	-		GFF2333	0.28	-1.5
2,358,399	+		GFF2333	0.31	+0.9
2,358,404	+		GFF2333	0.31	+0.1
2,358,404	+		GFF2333	0.31	+1.0
2,358,412	+		GFF2333	0.33	-1.2
2,358,412	+		GFF2333	0.33	+0.0
2,358,420	-		GFF2333	0.34	+0.1
2,358,420	-		GFF2333	0.34	-0.6
2,358,456	+		GFF2333	0.40	-0.9
2,358,464	+		GFF2333	0.41	+0.2
2,358,464	+		GFF2333	0.41	-0.6
2,358,464	-		GFF2333	0.41	+0.7
2,358,472	-		GFF2333	0.42	-0.7
2,358,497	-		GFF2333	0.47	-0.5
2,358,507	-		GFF2333	0.48	-1.1
2,358,507	-		GFF2333	0.48	+0.1
2,358,516	+		GFF2333	0.50	-1.3
2,358,517	+		GFF2333	0.50	-0.6
2,358,525	-		GFF2333	0.51	-0.8
2,358,541	+		GFF2333	0.54	-0.0
2,358,545	-		GFF2333	0.54	-0.2
2,358,549	-		GFF2333	0.55	+0.3
2,358,620	+		GFF2333	0.67	-0.6
2,358,626	-		GFF2333	0.68	-1.2
2,358,628	+		GFF2333	0.68	-2.6
2,358,628	+		GFF2333	0.68	-0.5
2,358,652	-		GFF2333	0.72	-0.8
2,358,656	+		GFF2333	0.73	-3.0
2,358,659	-		GFF2333	0.73	-0.3
2,358,707	-		GFF2333	0.81	+0.3
2,358,746	-		GFF2333	0.87	+0.7
2,358,747	-		GFF2333	0.87	+1.5
2,358,751	-		GFF2333	0.88	-0.4
2,358,753	-		GFF2333	0.88	-0.6
2,358,761	+		GFF2333	0.90	-1.7
2,358,761	+		GFF2333	0.90	-0.7
2,358,761	+		GFF2333	0.90	+1.2
2,358,761	+		GFF2333	0.90	-0.4
2,358,769	-				+0.2
2,358,774	-				-0.3
2,358,774	-				-1.6
2,358,867	+				+0.5
2,358,915	+				+0.4
2,358,915	+				-1.0
2,358,917	-				-1.3
2,358,920	+				-0.6
2,358,957	-				-0.3
2,358,957	-				+0.0
2,359,003	-		GFF2334	0.18	-1.7
2,359,008	-		GFF2334	0.19	-0.6
2,359,008	-		GFF2334	0.19	-1.7
2,359,008	-		GFF2334	0.19	+0.8
2,359,030	+		GFF2334	0.24	-0.8
2,359,038	+		GFF2334	0.26	-0.3
2,359,038	-		GFF2334	0.26	+1.5
2,359,038	-		GFF2334	0.26	-1.0
2,359,054	-		GFF2334	0.31	-0.8
2,359,054	-		GFF2334	0.31	+1.7
2,359,063	+		GFF2334	0.33	-0.2
2,359,068	+		GFF2334	0.34	-1.1
2,359,068	+		GFF2334	0.34	-0.1
2,359,076	-		GFF2334	0.36	-1.7
2,359,076	-		GFF2334	0.36	-1.9
2,359,083	-		GFF2334	0.38	+0.5
2,359,116	+		GFF2334	0.46	+0.1
2,359,123	+		GFF2334	0.48	-0.7
2,359,123	+		GFF2334	0.48	-0.6
2,359,124	-		GFF2334	0.48	-1.3
2,359,150	+		GFF2334	0.55	+0.9
2,359,150	+		GFF2334	0.55	-0.6
2,359,165	+		GFF2334	0.59	-1.0
2,359,165	+		GFF2334	0.59	+1.8
2,359,169	+		GFF2334	0.60	+0.5
2,359,169	+		GFF2334	0.60	-1.6
2,359,173	-		GFF2334	0.61	-1.1
2,359,173	-		GFF2334	0.61	-1.0
2,359,177	+		GFF2334	0.62	-1.1
2,359,177	-		GFF2334	0.62	-1.9
2,359,177	-		GFF2334	0.62	+0.5
2,359,177	-		GFF2334	0.62	+0.6
2,359,179	+		GFF2334	0.62	-0.1
2,359,185	-		GFF2334	0.64	-1.0
2,359,189	-		GFF2334	0.65	-0.7
2,359,208	+		GFF2334	0.70	-0.5
2,359,226	-		GFF2334	0.74	+0.9
2,359,232	+		GFF2334	0.76	+0.1
2,359,251	-		GFF2334	0.81	-0.3
2,359,263	-		GFF2334	0.84	-0.4
2,359,284	+		GFF2334	0.89	+0.8
2,359,284	-		GFF2334	0.89	-0.7
2,359,311	+				-0.4
2,359,319	-				-0.3
2,359,327	-				-1.5
2,359,329	+				-1.1
2,359,329	+				-0.6
2,359,337	-				-0.4
2,359,337	-				+0.9
2,359,337	-				-1.1
2,359,337	-				+0.6
2,359,341	+				+0.5
2,359,342	-				-0.5
2,359,350	+				-0.7
2,359,404	+				-1.1
2,359,411	+				+1.1
2,359,411	+				+1.6
2,359,411	+				-1.3
2,359,411	+				+0.2
2,359,417	-				-0.9
2,359,417	-				-0.6
2,359,419	-				-1.6
2,359,423	-				-1.2
2,359,479	-		GFF2335	0.15	-1.6
2,359,499	+		GFF2335	0.17	-0.5
2,359,519	+		GFF2335	0.19	+0.0
2,359,524	+		GFF2335	0.20	+0.8
2,359,529	+		GFF2335	0.20	-0.3
2,359,533	+		GFF2335	0.20	-1.2
2,359,533	+		GFF2335	0.20	+1.3
2,359,537	-		GFF2335	0.21	-2.0
2,359,537	-		GFF2335	0.21	-0.4
2,359,541	+		GFF2335	0.21	-0.8
2,359,549	-		GFF2335	0.22	-0.4
2,359,556	+		GFF2335	0.23	+1.0
2,359,561	+		GFF2335	0.23	-0.5
2,359,564	-		GFF2335	0.23	+0.9
2,359,564	-		GFF2335	0.23	-0.8
2,359,564	-		GFF2335	0.23	-1.4
2,359,589	-		GFF2335	0.26	-1.1
2,359,597	-		GFF2335	0.27	-0.1
2,359,615	+		GFF2335	0.28	-1.1
2,359,640	-		GFF2335	0.31	+0.4
2,359,669	-		GFF2335	0.34	-1.4
2,359,674	-		GFF2335	0.34	-0.6
2,359,674	-		GFF2335	0.34	+1.2
2,359,675	+		GFF2335	0.34	+0.3
2,359,727	+		GFF2335	0.39	+0.1
2,359,727	+		GFF2335	0.39	-0.3
2,359,732	+		GFF2335	0.40	-0.3
2,359,735	-		GFF2335	0.40	-0.7
2,359,740	-		GFF2335	0.41	-1.3
2,359,743	+		GFF2335	0.41	-1.2
2,359,751	-		GFF2335	0.42	+1.7
2,359,757	-		GFF2335	0.42	+0.5
2,359,772	+		GFF2335	0.44	-0.3
2,359,772	+		GFF2335	0.44	-1.2
2,359,777	-		GFF2335	0.44	-0.1
2,359,780	-		GFF2335	0.44	+1.1
2,359,780	-		GFF2335	0.44	-0.5
2,359,780	-		GFF2335	0.44	-1.5
2,359,780	-		GFF2335	0.44	+0.0
2,359,809	+		GFF2335	0.47	-1.1