Strain Fitness in Sphingobium sp. HT1-2 around GFF2300

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,326,254	-		GFF2297	0.74	-0.3
2,326,270	-		GFF2297	0.75	+2.2
2,326,298	-		GFF2297	0.77	-0.2
2,326,298	-		GFF2297	0.77	-1.0
2,326,348	+		GFF2297	0.79	-0.8
2,326,348	+		GFF2297	0.79	-0.5
2,326,348	+		GFF2297	0.79	-0.0
2,326,358	+		GFF2297	0.80	-0.6
2,326,358	+		GFF2297	0.80	-0.7
2,326,366	-		GFF2297	0.80	+0.2
2,326,376	+		GFF2297	0.81	-0.4
2,326,408	+		GFF2297	0.83	-0.3
2,326,413	+		GFF2297	0.83	+0.1
2,326,413	+		GFF2297	0.83	+0.1
2,326,413	+		GFF2297	0.83	-0.5
2,326,413	+		GFF2297	0.83	-1.1
2,326,416	-		GFF2297	0.83	-0.5
2,326,416	-		GFF2297	0.83	+0.2
2,326,416	-		GFF2297	0.83	+0.5
2,326,421	-		GFF2297	0.84	-0.7
2,326,421	-		GFF2297	0.84	+0.9
2,326,421	-		GFF2297	0.84	+0.9
2,326,426	+		GFF2297	0.84	-1.0
2,326,434	+		GFF2297	0.84	+0.4
2,326,446	+		GFF2297	0.85	-0.5
2,326,446	+		GFF2297	0.85	-0.4
2,326,454	-		GFF2297	0.85	-0.8
2,326,456	+		GFF2297	0.86	-0.5
2,326,456	+		GFF2297	0.86	+0.6
2,326,459	-		GFF2297	0.86	+0.5
2,326,464	-		GFF2297	0.86	+1.7
2,326,464	-		GFF2297	0.86	-1.3
2,326,476	-		GFF2297	0.87	+0.9
2,326,476	-		GFF2297	0.87	+0.4
2,326,488	+		GFF2297	0.87	-0.4
2,326,488	+		GFF2297	0.87	-1.2
2,326,488	+		GFF2297	0.87	+0.2
2,326,488	+		GFF2297	0.87	-1.4
2,326,488	+		GFF2297	0.87	-0.7
2,326,491	-		GFF2297	0.88	-0.1
2,326,493	+		GFF2297	0.88	-0.5
2,326,496	-		GFF2297	0.88	+0.3
2,326,498	+		GFF2297	0.88	-0.6
2,326,498	+		GFF2297	0.88	+1.5
2,326,498	+		GFF2297	0.88	+0.8
2,326,498	+		GFF2297	0.88	+0.5
2,326,503	+		GFF2297	0.88	-0.8
2,326,503	+		GFF2297	0.88	-1.4
2,326,503	+		GFF2297	0.88	-0.4
2,326,506	-		GFF2297	0.88	-0.9
2,326,506	-		GFF2297	0.88	+0.1
2,326,506	-		GFF2297	0.88	-0.8
2,326,506	-		GFF2297	0.88	-0.9
2,326,506	-		GFF2297	0.88	-1.3
2,326,506	-		GFF2297	0.88	-2.3
2,326,511	-		GFF2297	0.89	-2.1
2,326,511	-		GFF2297	0.89	-0.1
2,326,511	-		GFF2297	0.89	+0.7
2,326,580	+				+1.3
2,326,590	+				+0.5
2,326,598	-				-0.5
2,326,598	-				+0.6
2,326,615	+				-1.1
2,326,638	+				-1.1
2,326,638	+				-1.4
2,326,646	-				+0.2
2,326,648	+				-0.4
2,326,648	+				+0.6
2,326,648	+				+0.1
2,326,648	+				+0.4
2,326,648	+				-0.8
2,326,648	+				-1.1
2,326,648	+				-1.1
2,326,648	+				-0.2
2,326,648	+				+0.4
2,326,654	+				-1.7
2,326,656	-				-0.6
2,326,656	-				-1.0
2,326,656	-				+0.2
2,326,656	-				+0.2
2,326,656	-				+0.5
2,326,668	-				-0.8
2,326,673	+				-0.9
2,326,712	+				-1.1
2,326,712	+				-0.3
2,326,755	-				-0.3
2,326,784	+				+0.1
2,326,880	-		GFF2298	0.51	-0.3
2,326,885	-		GFF2298	0.53	-0.0
2,326,891	+		GFF2298	0.56	+0.6
2,326,894	-		GFF2298	0.58	-1.1
2,326,899	-		GFF2298	0.60	-1.3
2,326,899	-		GFF2298	0.60	+0.6
2,326,906	+		GFF2298	0.64	-0.7
2,326,926	-		GFF2298	0.74	-0.2
2,326,926	-		GFF2298	0.74	+1.1
2,326,948	+		GFF2298	0.84	+1.1
2,326,948	+		GFF2298	0.84	-0.9
2,326,966	-				+0.1
2,327,000	+				-0.3
2,327,000	+				+1.2
2,327,023	+		GFF2299	0.20	+0.7
2,327,032	-		GFF2299	0.25	-0.5
2,327,050	+		GFF2299	0.35	-0.7
2,327,061	+		GFF2299	0.41	-0.9
2,327,093	+		GFF2299	0.58	-0.5
2,327,198	+				-0.4
2,327,240	+				+1.3
2,327,248	-				+0.1
2,327,248	-				-1.0
2,327,251	+				+0.7
2,327,321	+				+1.0
2,327,335	+				+0.1
2,327,357	+		GFF2300	0.12	-1.9
2,327,370	+		GFF2300	0.13	-0.5
2,327,370	-		GFF2300	0.13	+0.2
2,327,370	-		GFF2300	0.13	-0.9
2,327,378	-		GFF2300	0.14	-1.5
2,327,378	-		GFF2300	0.14	-1.5
2,327,383	-		GFF2300	0.14	-0.2
2,327,398	+		GFF2300	0.16	-0.9
2,327,419	+		GFF2300	0.18	-0.1
2,327,420	+		GFF2300	0.18	+0.6
2,327,427	+		GFF2300	0.19	-0.4
2,327,427	+		GFF2300	0.19	-0.3
2,327,428	-		GFF2300	0.19	-2.4
2,327,428	-		GFF2300	0.19	-0.5
2,327,435	-		GFF2300	0.19	-2.1
2,327,435	-		GFF2300	0.19	+0.3
2,327,463	+		GFF2300	0.22	-0.5
2,327,475	+		GFF2300	0.23	+0.8
2,327,507	+		GFF2300	0.27	-1.5
2,327,515	-		GFF2300	0.27	-0.3
2,327,517	+		GFF2300	0.28	+0.6
2,327,522	+		GFF2300	0.28	-0.8
2,327,536	-		GFF2300	0.29	-0.6
2,327,541	-		GFF2300	0.30	-1.3
2,327,541	-		GFF2300	0.30	-1.3
2,327,547	+		GFF2300	0.31	+0.7
2,327,548	-		GFF2300	0.31	-0.2
2,327,606	-		GFF2300	0.36	+0.1
2,327,642	-		GFF2300	0.40	-1.7
2,327,689	+		GFF2300	0.45	-1.1
2,327,710	+		GFF2300	0.47	-0.1
2,327,724	-		GFF2300	0.48	-0.1
2,327,725	-		GFF2300	0.48	+0.5
2,327,755	-		GFF2300	0.51	-1.9
2,327,810	-		GFF2300	0.57	-0.9
2,327,810	-		GFF2300	0.57	-1.4
2,327,817	+		GFF2300	0.58	-0.7
2,327,819	-		GFF2300	0.58	-0.1
2,327,819	-		GFF2300	0.58	+0.7
2,327,820	-		GFF2300	0.58	+0.1
2,327,824	+		GFF2300	0.58	-0.9
2,327,824	+		GFF2300	0.58	+0.4
2,327,824	+		GFF2300	0.58	-0.3
2,327,824	+		GFF2300	0.58	-0.4
2,327,829	+		GFF2300	0.59	-0.9
2,327,829	+		GFF2300	0.59	-0.3
2,327,829	+		GFF2300	0.59	+0.4
2,327,832	-		GFF2300	0.59	-1.8
2,327,834	+		GFF2300	0.59	-0.1
2,327,837	-		GFF2300	0.60	+1.0
2,327,837	-		GFF2300	0.60	-2.3
2,327,837	-		GFF2300	0.60	-1.7
2,327,837	-		GFF2300	0.60	-1.2
2,327,848	+		GFF2300	0.61	-1.0
2,327,852	-		GFF2300	0.61	+1.1
2,327,856	+		GFF2300	0.61	-0.7
2,327,856	+		GFF2300	0.61	-0.4
2,327,864	-		GFF2300	0.62	+0.3
2,327,864	-		GFF2300	0.62	-1.9
2,327,874	+		GFF2300	0.63	-0.7
2,327,881	+		GFF2300	0.64	-1.8
2,327,884	-		GFF2300	0.64	-1.0
2,327,884	-		GFF2300	0.64	-0.3
2,327,888	+		GFF2300	0.65	-0.4
2,327,888	-		GFF2300	0.65	+0.0
2,327,889	-		GFF2300	0.65	+0.3
2,327,906	-		GFF2300	0.66	+0.1
2,327,948	+		GFF2300	0.71	-1.8
2,327,948	+		GFF2300	0.71	+0.6
2,327,948	+		GFF2300	0.71	+0.7
2,327,948	+		GFF2300	0.71	+0.2
2,327,948	+		GFF2300	0.71	-0.3
2,327,948	+		GFF2300	0.71	+0.9
2,327,948	+		GFF2300	0.71	-0.2
2,327,948	+		GFF2300	0.71	-0.3
2,327,949	-		GFF2300	0.71	+0.4
2,327,956	-		GFF2300	0.71	-2.1
2,327,956	-		GFF2300	0.71	-1.3
2,327,956	-		GFF2300	0.71	-1.5
2,327,956	-		GFF2300	0.71	-1.3
2,327,971	+		GFF2300	0.73	-0.1
2,327,979	+		GFF2300	0.74	+0.7
2,327,979	-		GFF2300	0.74	-0.5
2,328,009	+		GFF2300	0.77	+0.2
2,328,034	+		GFF2300	0.79	-1.7
2,328,077	+		GFF2300	0.84	-1.3
2,328,082	+		GFF2300	0.84	-0.8
2,328,083	-		GFF2300	0.84	+2.0
2,328,104	+		GFF2300	0.86	-1.8
2,328,115	+		GFF2300	0.87	-0.1
2,328,115	+		GFF2300	0.87	+0.6
2,328,134	+		GFF2300	0.89	-0.5
2,328,154	+				-1.0
2,328,154	-				-1.7
2,328,156	-				-0.4
2,328,171	+				-1.2
2,328,171	+				-0.5
2,328,179	-				+1.4
2,328,179	-				-0.4
2,328,179	-				+0.0
2,328,181	+				-0.3
2,328,213	+				-0.4
2,328,213	+				-1.4
2,328,221	-				-1.7
2,328,221	-				+0.5
2,328,221	-				-1.3
2,328,221	-				+0.6
2,328,221	-				+0.8
2,328,248	-				-1.5
2,328,248	-				-0.1
2,328,253	+				-2.2
2,328,258	+				+0.8
2,328,266	-				-0.7
2,328,275	+				-0.8
2,328,280	+				-0.4
2,328,280	+				-2.0
2,328,298	+				-0.5
2,328,305	-				-1.9
2,328,318	+				-2.6
2,328,330	-				-0.4
2,328,339	+				-0.6
2,328,347	-				-0.3
2,328,349	-				+0.5
2,328,830	-				-0.7
2,328,869	+				-1.4
2,328,895	+				-0.8
2,328,938	+		GFF2302	0.21	-0.4
2,328,978	+		GFF2302	0.33	-1.9
2,328,978	+		GFF2302	0.33	-0.9
2,328,986	-		GFF2302	0.36	-0.7
2,328,986	-		GFF2302	0.36	-1.9
2,328,986	-		GFF2302	0.36	-1.6
2,328,986	-		GFF2302	0.36	-0.6
2,328,997	+		GFF2302	0.39	+0.3
2,328,997	+		GFF2302	0.39	+0.2
2,328,997	+		GFF2302	0.39	-0.5
2,328,997	+		GFF2302	0.39	-2.3
2,328,999	+		GFF2302	0.40	+0.7
2,329,005	-		GFF2302	0.42	-0.4
2,329,005	-		GFF2302	0.42	-0.5
2,329,005	-		GFF2302	0.42	-0.3
2,329,005	-		GFF2302	0.42	-1.3
2,329,005	-		GFF2302	0.42	-0.1
2,329,005	-		GFF2302	0.42	+1.7
2,329,005	-		GFF2302	0.42	-2.2
2,329,005	-		GFF2302	0.42	-0.6
2,329,005	-		GFF2302	0.42	-0.7
2,329,005	-		GFF2302	0.42	+0.5
2,329,005	-		GFF2302	0.42	+0.9
2,329,005	-		GFF2302	0.42	-1.6
2,329,005	-		GFF2302	0.42	+1.3
2,329,005	-		GFF2302	0.42	+0.3
2,329,005	-		GFF2302	0.42	+1.3
2,329,007	-		GFF2302	0.43	+0.7
2,329,011	+		GFF2302	0.44	-0.9
2,329,057	+		GFF2302	0.58	+1.1
2,329,113	-		GFF2302	0.76	+0.1
2,329,141	+		GFF2302	0.85	-0.4
2,329,141	+		GFF2302	0.85	+1.8
2,329,148	-		GFF2302	0.87	+0.6
2,329,148	-		GFF2302	0.87	-1.5
2,329,153	-		GFF2302	0.89	-1.3
2,329,165	+				-0.5
2,329,173	-				-1.0
2,329,173	-				-1.8
2,329,178	-				+0.3
2,329,183	-				-2.9
2,329,213	+				-1.3
2,329,215	-				-0.1
2,329,218	+				-2.0
2,329,221	+				-1.8
2,329,226	-				-1.9
2,329,228	-				+0.3