Strain Fitness in Sphingobium sp. HT1-2 around GFF2231

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,255,303	-		GFF2230	0.59	-1.3
2,255,330	+		GFF2230	0.60	+0.1
2,255,330	+		GFF2230	0.60	-1.0
2,255,330	+		GFF2230	0.60	+0.4
2,255,330	+		GFF2230	0.60	+0.6
2,255,330	+		GFF2230	0.60	-1.1
2,255,330	+		GFF2230	0.60	-1.2
2,255,330	+		GFF2230	0.60	+0.1
2,255,330	+		GFF2230	0.60	-1.5
2,255,330	+		GFF2230	0.60	+0.1
2,255,330	+		GFF2230	0.60	+1.2
2,255,330	+		GFF2230	0.60	-0.1
2,255,330	+		GFF2230	0.60	-0.6
2,255,330	+		GFF2230	0.60	-0.6
2,255,338	-		GFF2230	0.60	-0.1
2,255,338	-		GFF2230	0.60	+1.3
2,255,338	-		GFF2230	0.60	-1.1
2,255,338	-		GFF2230	0.60	-0.7
2,255,338	-		GFF2230	0.60	+1.1
2,255,338	-		GFF2230	0.60	-2.1
2,255,338	-		GFF2230	0.60	+1.4
2,255,338	-		GFF2230	0.60	-1.1
2,255,338	-		GFF2230	0.60	+0.4
2,255,338	-		GFF2230	0.60	-1.2
2,255,338	-		GFF2230	0.60	+0.0
2,255,338	-		GFF2230	0.60	-0.4
2,255,338	-		GFF2230	0.60	-0.6
2,255,338	-		GFF2230	0.60	+0.2
2,255,361	+		GFF2230	0.61	+0.2
2,255,377	-		GFF2230	0.62	-0.5
2,255,381	+		GFF2230	0.62	-0.4
2,255,381	+		GFF2230	0.62	-0.3
2,255,381	+		GFF2230	0.62	+1.1
2,255,381	+		GFF2230	0.62	-0.2
2,255,389	-		GFF2230	0.62	-2.5
2,255,389	-		GFF2230	0.62	+1.6
2,255,415	-		GFF2230	0.63	-0.8
2,255,423	-		GFF2230	0.64	-0.4
2,255,426	+		GFF2230	0.64	+0.4
2,255,426	+		GFF2230	0.64	+0.4
2,255,490	+		GFF2230	0.67	+0.6
2,255,510	+		GFF2230	0.67	-1.9
2,255,510	+		GFF2230	0.67	+0.6
2,255,518	-		GFF2230	0.68	-1.5
2,255,518	-		GFF2230	0.68	-1.2
2,255,518	-		GFF2230	0.68	-0.6
2,255,518	-		GFF2230	0.68	+1.1
2,255,518	-		GFF2230	0.68	+0.5
2,255,521	+		GFF2230	0.68	+0.4
2,255,529	-		GFF2230	0.68	+0.5
2,255,539	+		GFF2230	0.69	+0.5
2,255,539	+		GFF2230	0.69	-0.9
2,255,547	-		GFF2230	0.69	+0.7
2,255,547	-		GFF2230	0.69	-0.5
2,255,547	-		GFF2230	0.69	+0.3
2,255,577	-		GFF2230	0.70	-1.0
2,255,585	-		GFF2230	0.71	+1.0
2,255,594	-		GFF2230	0.71	+0.1
2,255,625	-		GFF2230	0.72	-0.6
2,255,625	-		GFF2230	0.72	+0.5
2,255,626	-		GFF2230	0.72	+1.5
2,255,627	-		GFF2230	0.72	-0.7
2,255,627	-		GFF2230	0.72	-1.2
2,255,645	-		GFF2230	0.73	-1.3
2,255,683	+		GFF2230	0.75	+0.1
2,255,693	+		GFF2230	0.75	+0.1
2,255,701	-		GFF2230	0.75	+0.4
2,255,707	-		GFF2230	0.76	-2.0
2,255,720	+		GFF2230	0.76	-0.7
2,255,726	-		GFF2230	0.77	-0.3
2,255,762	+		GFF2230	0.78	-0.9
2,255,772	+		GFF2230	0.78	+0.7
2,255,799	-		GFF2230	0.80	-1.6
2,255,816	+		GFF2230	0.80	-1.7
2,255,816	+		GFF2230	0.80	-1.1
2,255,816	+		GFF2230	0.80	-1.0
2,255,824	-		GFF2230	0.81	-2.0
2,255,824	-		GFF2230	0.81	+1.3
2,255,824	-		GFF2230	0.81	-1.5
2,255,824	-		GFF2230	0.81	-0.6
2,255,824	-		GFF2230	0.81	-0.7
2,255,829	-		GFF2230	0.81	-0.1
2,255,844	+		GFF2230	0.81	-1.1
2,255,858	-		GFF2230	0.82	+0.7
2,255,871	+		GFF2230	0.83	+1.1
2,255,871	+		GFF2230	0.83	-0.9
2,255,879	-		GFF2230	0.83	-2.2
2,255,879	-		GFF2230	0.83	+1.0
2,255,879	-		GFF2230	0.83	-1.6
2,255,884	-		GFF2230	0.83	-0.1
2,255,889	-		GFF2230	0.83	+0.4
2,255,896	+		GFF2230	0.84	-0.4
2,255,896	+		GFF2230	0.84	+0.5
2,255,896	+		GFF2230	0.84	-0.8
2,255,896	+		GFF2230	0.84	+1.0
2,255,904	-		GFF2230	0.84	-2.2
2,255,904	-		GFF2230	0.84	-1.5
2,255,904	-		GFF2230	0.84	-2.2
2,255,904	-		GFF2230	0.84	-1.1
2,255,904	-		GFF2230	0.84	-1.0
2,255,904	-		GFF2230	0.84	+1.1
2,255,904	-		GFF2230	0.84	-0.3
2,255,904	-		GFF2230	0.84	+0.1
2,255,908	-		GFF2230	0.84	-1.3
2,255,914	+		GFF2230	0.84	-0.2
2,255,914	+		GFF2230	0.84	+0.7
2,255,924	+		GFF2230	0.85	+0.3
2,255,926	+		GFF2230	0.85	-0.0
2,255,947	+		GFF2230	0.86	-0.4
2,255,947	+		GFF2230	0.86	+1.8
2,255,952	+		GFF2230	0.86	-1.4
2,255,957	+		GFF2230	0.86	-1.1
2,255,984	+		GFF2230	0.87	-0.9
2,256,005	+		GFF2230	0.88	-0.3
2,256,005	+		GFF2230	0.88	-1.3
2,256,005	+		GFF2230	0.88	+0.2
2,256,005	+		GFF2230	0.88	+0.7
2,256,005	-		GFF2230	0.88	-0.6
2,256,013	-		GFF2230	0.89	-0.8
2,256,013	-		GFF2230	0.89	+0.1
2,256,013	-		GFF2230	0.89	-1.1
2,256,019	+		GFF2230	0.89	-0.9
2,256,025	+		GFF2230	0.89	-0.7
2,256,027	-		GFF2230	0.89	+0.0
2,256,032	-		GFF2230	0.89	-0.5
2,256,051	+				+0.7
2,256,051	+				-2.3
2,256,052	-				-1.5
2,256,073	+				-1.1
2,256,077	+				+0.6
2,256,077	+				-1.6
2,256,085	-				-0.5
2,256,115	-				+0.5
2,256,129	+				+1.9
2,256,129	+				-1.2
2,256,160	-				+1.2
2,256,160	-				-0.3
2,256,160	-				-0.1
2,256,166	+				+0.1
2,256,174	+				+0.9
2,256,174	+				-0.1
2,256,174	-				+0.5
2,256,175	+				+0.8
2,256,175	+				+0.0
2,256,180	-				+0.1
2,256,190	+				-1.7
2,256,190	+				+0.1
2,256,192	-				-0.3
2,256,198	-				+0.5
2,256,202	+				-1.4
2,256,224	+				-0.9
2,256,238	-				-0.9
2,256,240	+				-0.1
2,256,245	+				+0.2
2,256,245	+				+0.3
2,256,253	-				-1.1
2,256,253	-				-1.4
2,256,253	-				-2.0
2,256,253	-				-0.4
2,256,253	-				-0.6
2,256,287	-				-0.8
2,256,294	-				+0.8
2,256,296	+				+0.1
2,256,302	+				-0.7
2,256,304	-				-2.4
2,256,317	-				+1.3
2,256,319	-				-0.6
2,256,322	+				-0.3
2,256,330	-				+0.8
2,256,336	-				-0.7
2,256,372	+				+0.1
2,256,393	-				-1.1
2,256,401	+				-0.6
2,256,401	-				+0.3
2,256,415	-				-2.1
2,256,419	+				+0.4
2,256,427	+				-1.3
2,256,427	+				-0.6
2,256,468	+				-0.4
2,256,473	-				-0.2
2,256,474	-				-1.1
2,256,476	-				+0.2
2,256,476	-				-1.1
2,256,482	+				+0.2
2,256,490	-				-1.5
2,256,496	+				-0.5
2,256,496	+				+0.6
2,256,515	-				-1.9
2,256,521	-				-0.3
2,256,521	-				+0.7
2,256,521	-				-0.7
2,256,527	-		GFF2231	0.10	-1.1
2,256,529	+		GFF2231	0.10	-0.3
2,256,529	+		GFF2231	0.10	-1.1
2,256,531	+		GFF2231	0.10	+0.8
2,256,537	-		GFF2231	0.10	-0.5
2,256,539	-		GFF2231	0.11	+0.5
2,256,548	+		GFF2231	0.11	-0.9
2,256,553	+		GFF2231	0.11	+1.2
2,256,553	+		GFF2231	0.11	-1.2
2,256,553	+		GFF2231	0.11	-1.9
2,256,561	-		GFF2231	0.11	+0.8
2,256,566	+		GFF2231	0.12	+0.6
2,256,571	-		GFF2231	0.12	-1.3
2,256,592	+		GFF2231	0.13	+0.5
2,256,592	+		GFF2231	0.13	-1.9
2,256,600	-		GFF2231	0.13	-1.7
2,256,629	+		GFF2231	0.14	+1.1
2,256,629	+		GFF2231	0.14	-1.2
2,256,637	-		GFF2231	0.15	-0.4
2,256,637	-		GFF2231	0.15	-2.0
2,256,640	+		GFF2231	0.15	+0.7
2,256,648	-		GFF2231	0.15	-0.3
2,256,648	-		GFF2231	0.15	+1.2
2,256,648	-		GFF2231	0.15	-1.7
2,256,648	-		GFF2231	0.15	-0.7
2,256,648	-		GFF2231	0.15	+0.4
2,256,657	+		GFF2231	0.16	+0.6
2,256,657	+		GFF2231	0.16	-1.1
2,256,664	+		GFF2231	0.16	-0.7
2,256,664	+		GFF2231	0.16	+1.1
2,256,664	+		GFF2231	0.16	-0.6
2,256,664	+		GFF2231	0.16	+0.1
2,256,664	+		GFF2231	0.16	-0.6
2,256,664	+		GFF2231	0.16	-1.0
2,256,664	+		GFF2231	0.16	-1.5
2,256,664	+		GFF2231	0.16	-1.0
2,256,664	+		GFF2231	0.16	+0.2
2,256,664	+		GFF2231	0.16	+0.0
2,256,664	+		GFF2231	0.16	-0.9
2,256,664	+		GFF2231	0.16	-1.6
2,256,664	+		GFF2231	0.16	-1.6
2,256,664	+		GFF2231	0.16	+0.4
2,256,664	+		GFF2231	0.16	-1.1
2,256,665	+		GFF2231	0.16	+0.5
2,256,671	-		GFF2231	0.16	-1.8
2,256,671	-		GFF2231	0.16	-0.5
2,256,672	-		GFF2231	0.16	-0.3
2,256,672	-		GFF2231	0.16	-1.8
2,256,672	-		GFF2231	0.16	-0.4
2,256,672	-		GFF2231	0.16	+0.5
2,256,672	-		GFF2231	0.16	-1.1
2,256,672	-		GFF2231	0.16	+0.7
2,256,674	+		GFF2231	0.16	-1.9
2,256,674	+		GFF2231	0.16	-0.6
2,256,682	+		GFF2231	0.17	-0.7
2,256,682	-		GFF2231	0.17	-0.3
2,256,684	+		GFF2231	0.17	-1.0
2,256,690	-		GFF2231	0.17	-1.6
2,256,690	-		GFF2231	0.17	+0.0
2,256,704	+		GFF2231	0.18	-1.7
2,256,704	+		GFF2231	0.18	-1.5
2,256,706	+		GFF2231	0.18	-1.8
2,256,729	-		GFF2231	0.19	-1.0
2,256,753	-		GFF2231	0.20	+1.9
2,256,760	+		GFF2231	0.20	-0.6
2,256,790	+		GFF2231	0.21	-0.5
2,256,817	+		GFF2231	0.22	+1.5
2,256,825	-		GFF2231	0.23	+0.6
2,256,832	+		GFF2231	0.23	-0.4
2,256,836	+		GFF2231	0.23	+0.2
2,256,836	+		GFF2231	0.23	+0.4
2,256,844	-		GFF2231	0.23	-1.7
2,256,844	-		GFF2231	0.23	-1.1
2,256,856	+		GFF2231	0.24	+0.5
2,256,856	+		GFF2231	0.24	+0.4
2,256,856	+		GFF2231	0.24	-0.3
2,256,856	+		GFF2231	0.24	-0.8
2,256,856	+		GFF2231	0.24	+0.5
2,256,856	+		GFF2231	0.24	-0.1
2,256,856	+		GFF2231	0.24	-0.1
2,256,856	+		GFF2231	0.24	-0.3
2,256,856	+		GFF2231	0.24	-0.5
2,256,856	+		GFF2231	0.24	+0.9
2,256,856	+		GFF2231	0.24	+0.6
2,256,856	+		GFF2231	0.24	-0.4
2,256,856	+		GFF2231	0.24	+0.0
2,256,856	+		GFF2231	0.24	-0.5
2,256,864	-		GFF2231	0.24	-0.8
2,256,864	-		GFF2231	0.24	+0.4
2,256,864	-		GFF2231	0.24	-2.1
2,256,864	-		GFF2231	0.24	-0.7
2,256,864	-		GFF2231	0.24	+1.2
2,256,864	-		GFF2231	0.24	-0.6
2,256,864	-		GFF2231	0.24	-1.9
2,256,864	-		GFF2231	0.24	-0.3
2,256,864	-		GFF2231	0.24	-1.0
2,256,864	-		GFF2231	0.24	-0.4
2,256,868	+		GFF2231	0.24	+0.1
2,256,868	+		GFF2231	0.24	+0.9
2,256,876	-		GFF2231	0.25	-1.3
2,256,888	+		GFF2231	0.25	-1.2
2,256,906	-		GFF2231	0.26	-0.2
2,256,906	-		GFF2231	0.26	+0.1
2,256,908	+		GFF2231	0.26	-0.9
2,256,908	+		GFF2231	0.26	+0.6
2,256,911	-		GFF2231	0.26	+0.5
2,256,916	-		GFF2231	0.26	-1.0
2,256,916	-		GFF2231	0.26	-0.4
2,256,916	-		GFF2231	0.26	-0.5
2,256,922	+		GFF2231	0.27	-1.5
2,256,922	+		GFF2231	0.27	-0.6
2,256,922	+		GFF2231	0.27	+1.2
2,256,924	-		GFF2231	0.27	+0.5
2,256,930	-		GFF2231	0.27	+0.4
2,256,942	-		GFF2231	0.28	-1.4
2,256,943	+		GFF2231	0.28	-0.9
2,256,943	+		GFF2231	0.28	-0.3
2,256,951	-		GFF2231	0.28	-0.4
2,256,953	-		GFF2231	0.28	+0.2
2,256,956	-		GFF2231	0.28	-0.1
2,256,974	+		GFF2231	0.29	+1.1
2,256,974	+		GFF2231	0.29	+0.6
2,256,974	+		GFF2231	0.29	+0.2
2,256,974	+		GFF2231	0.29	-0.0
2,256,974	+		GFF2231	0.29	-1.7
2,256,979	+		GFF2231	0.29	-0.7
2,256,979	+		GFF2231	0.29	+1.4
2,256,979	+		GFF2231	0.29	-1.2
2,256,981	-		GFF2231	0.29	-0.4
2,256,982	-		GFF2231	0.29	+0.4
2,256,982	-		GFF2231	0.29	-1.4
2,256,982	-		GFF2231	0.29	-1.4
2,256,982	-		GFF2231	0.29	-0.3
2,256,982	-		GFF2231	0.29	-0.2
2,256,982	-		GFF2231	0.29	-1.5
2,256,987	-		GFF2231	0.29	+1.1
2,257,008	+		GFF2231	0.30	-1.1
2,257,008	+		GFF2231	0.30	-0.6
2,257,017	-		GFF2231	0.31	-0.6
2,257,028	+		GFF2231	0.31	-0.5
2,257,028	+		GFF2231	0.31	-1.2
2,257,031	+		GFF2231	0.31	-0.1
2,257,031	-		GFF2231	0.31	-0.4
2,257,036	+		GFF2231	0.31	-1.7
2,257,039	-		GFF2231	0.32	-0.3
2,257,047	+		GFF2231	0.32	-0.6
2,257,047	+		GFF2231	0.32	-1.9
2,257,047	+		GFF2231	0.32	-1.3
2,257,047	+		GFF2231	0.32	-1.1
2,257,047	+		GFF2231	0.32	-0.8
2,257,047	+		GFF2231	0.32	+1.7
2,257,048	-		GFF2231	0.32	-0.6
2,257,048	-		GFF2231	0.32	-0.4
2,257,055	-		GFF2231	0.32	+0.9
2,257,055	-		GFF2231	0.32	-0.3
2,257,055	-		GFF2231	0.32	-2.6
2,257,069	-		GFF2231	0.33	-0.9
2,257,089	-		GFF2231	0.34	-0.5
2,257,108	-		GFF2231	0.35	-0.4
2,257,118	+		GFF2231	0.35	-1.5
2,257,118	+		GFF2231	0.35	-1.9
2,257,118	+		GFF2231	0.35	-0.6
2,257,123	+		GFF2231	0.35	-0.3
2,257,141	+		GFF2231	0.36	-0.5
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2,257,209	-		GFF2231	0.39	-0.9
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2,257,222	-		GFF2231	0.39	-0.2
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2,257,350	-		GFF2231	0.45	-0.4
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2,257,557	-		GFF2231	0.53	-1.0
2,257,557	-		GFF2231	0.53	-0.8
2,257,557	-		GFF2231	0.53	-1.3
2,257,557	-		GFF2231	0.53	-1.5
2,257,557	-		GFF2231	0.53	-0.9
2,257,557	-		GFF2231	0.53	-1.0
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2,257,562	-		GFF2231	0.54	-0.7
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2,257,652	-		GFF2231	0.57	-0.5
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2,257,692	+		GFF2231	0.59	-0.7
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2,257,748	-		GFF2231	0.61	-1.2
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2,257,817	-		GFF2231	0.64	-2.3
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2,257,889	+		GFF2231	0.67	-0.7
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2,257,897	-		GFF2231	0.68	-0.8
2,257,897	-		GFF2231	0.68	+0.9
2,257,897	-		GFF2231	0.68	-1.6
2,257,897	-		GFF2231	0.68	-0.9
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2,257,932	+		GFF2231	0.69	-1.8
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2,257,952	+		GFF2231	0.70	-1.4
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2,257,962	-		GFF2231	0.70	-0.9
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2,257,976	-		GFF2231	0.71	-0.3
2,257,976	-		GFF2231	0.71	+0.8
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2,258,058	+		GFF2231	0.74	+0.1
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2,258,067	-		GFF2231	0.75	-1.1
2,258,078	+		GFF2231	0.75	+0.4
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2,258,150	-		GFF2231	0.78	-0.4
2,258,162	-		GFF2231	0.79	-0.3
2,258,167	+		GFF2231	0.79	-0.7
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2,258,219	-		GFF2231	0.81	-0.8
2,258,220	+		GFF2231	0.81	-0.2
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2,258,243	-		GFF2231	0.82	-1.9
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2,258,256	-		GFF2231	0.83	-0.3
2,258,261	-		GFF2231	0.83	-0.5
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2,258,445	-				-0.9
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2,258,592	-				+0.5
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