Strain Fitness in Sphingobium sp. HT1-2 around GFF2224

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,241,441	-				+0.6
2,241,441	-				+0.4
2,241,546	-				-0.8
2,241,562	-				-0.3
2,241,573	+				-0.8
2,241,582	-				-0.6
2,241,731	+		GFF2222	0.13	-0.3
2,241,731	+		GFF2222	0.13	-0.5
2,241,731	+		GFF2222	0.13	-1.7
2,241,731	+		GFF2222	0.13	-0.4
2,241,731	+		GFF2222	0.13	-1.7
2,241,731	+		GFF2222	0.13	-0.6
2,241,731	+		GFF2222	0.13	-0.4
2,241,731	+		GFF2222	0.13	-0.6
2,241,731	+		GFF2222	0.13	-0.8
2,241,739	-		GFF2222	0.14	+0.3
2,241,739	-		GFF2222	0.14	-1.7
2,241,739	-		GFF2222	0.14	-0.4
2,241,739	-		GFF2222	0.14	+1.5
2,241,739	-		GFF2222	0.14	-0.1
2,241,739	-		GFF2222	0.14	-0.8
2,241,739	-		GFF2222	0.14	-0.4
2,241,739	-		GFF2222	0.14	-0.6
2,241,739	-		GFF2222	0.14	-0.3
2,241,739	-		GFF2222	0.14	-0.1
2,241,750	+		GFF2222	0.17	-0.6
2,241,750	+		GFF2222	0.17	-1.0
2,241,750	+		GFF2222	0.17	-0.4
2,241,758	-		GFF2222	0.18	-2.0
2,241,772	+		GFF2222	0.21	-0.8
2,241,772	+		GFF2222	0.21	+1.6
2,241,780	-		GFF2222	0.23	-1.1
2,241,780	-		GFF2222	0.23	-0.0
2,241,780	-		GFF2222	0.23	+1.2
2,241,780	-		GFF2222	0.23	-0.1
2,241,782	+		GFF2222	0.23	-1.1
2,241,782	+		GFF2222	0.23	-1.0
2,241,782	+		GFF2222	0.23	-0.4
2,241,782	+		GFF2222	0.23	-1.5
2,241,782	+		GFF2222	0.23	-0.3
2,241,782	+		GFF2222	0.23	-0.1
2,241,782	+		GFF2222	0.23	-1.1
2,241,782	+		GFF2222	0.23	-0.5
2,241,782	+		GFF2222	0.23	+0.4
2,241,790	-		GFF2222	0.25	+0.2
2,241,790	-		GFF2222	0.25	-0.3
2,241,790	-		GFF2222	0.25	-0.4
2,241,790	-		GFF2222	0.25	-1.2
2,241,790	-		GFF2222	0.25	-0.4
2,241,790	-		GFF2222	0.25	+0.4
2,241,790	-		GFF2222	0.25	-0.5
2,241,790	-		GFF2222	0.25	-0.6
2,241,790	-		GFF2222	0.25	-0.9
2,241,790	-		GFF2222	0.25	-0.9
2,241,790	-		GFF2222	0.25	-0.9
2,241,790	-		GFF2222	0.25	-0.4
2,241,790	-		GFF2222	0.25	+1.5
2,241,790	-		GFF2222	0.25	-1.0
2,241,824	-		GFF2222	0.32	+1.7
2,241,869	+		GFF2222	0.41	+1.0
2,241,869	+		GFF2222	0.41	-0.4
2,241,869	+		GFF2222	0.41	-1.3
2,241,898	+		GFF2222	0.47	-0.4
2,241,898	+		GFF2222	0.47	+0.9
2,241,905	+		GFF2222	0.49	-0.6
2,241,913	-		GFF2222	0.50	+0.3
2,241,920	+		GFF2222	0.52	-1.5
2,241,969	-		GFF2222	0.62	-1.1
2,242,042	+		GFF2222	0.77	+0.5
2,242,066	+		GFF2222	0.82	-1.2
2,242,074	-		GFF2222	0.83	+0.3
2,242,076	+		GFF2222	0.84	-0.3
2,242,076	+		GFF2222	0.84	-0.7
2,242,084	-		GFF2222	0.85	-0.4
2,242,084	-		GFF2222	0.85	-0.6
2,242,084	-		GFF2222	0.85	-1.2
2,242,084	-		GFF2222	0.85	-0.8
2,242,107	+				-0.8
2,242,127	-				-0.5
2,242,185	-		GFF2223	0.17	+0.6
2,242,200	-		GFF2223	0.24	+0.4
2,242,200	-		GFF2223	0.24	-0.6
2,242,200	-		GFF2223	0.24	-0.5
2,242,200	-		GFF2223	0.24	+0.1
2,242,205	-		GFF2223	0.26	-0.8
2,242,212	+		GFF2223	0.30	+0.4
2,242,255	-		GFF2223	0.51	+0.9
2,242,270	+		GFF2223	0.58	-0.4
2,242,293	+		GFF2223	0.70	-0.3
2,242,303	-		GFF2223	0.75	+0.8
2,242,308	-		GFF2223	0.77	-0.7
2,242,311	+		GFF2223	0.78	-1.0
2,242,313	-		GFF2223	0.79	-0.8
2,242,319	-		GFF2223	0.82	-1.4
2,242,319	-		GFF2223	0.82	-0.9
2,242,324	-		GFF2223	0.85	+0.6
2,242,324	-		GFF2223	0.85	-1.1
2,242,356	+				+1.7
2,242,365	+				+0.3
2,242,420	+				-1.3
2,242,420	+				-0.2
2,242,426	-				-2.1
2,242,426	-				-0.9
2,242,428	-				-0.3
2,242,428	-				-1.5
2,242,464	-				-0.6
2,242,488	+				+1.2
2,242,509	+				-1.5
2,242,517	-				+1.7
2,242,527	-				-0.6
2,242,551	-				+0.3
2,242,605	+		GFF2224	0.14	-0.5
2,242,605	+		GFF2224	0.14	-0.4
2,242,613	-		GFF2224	0.15	-1.0
2,242,627	+		GFF2224	0.16	+0.4
2,242,627	+		GFF2224	0.16	-0.1
2,242,635	-		GFF2224	0.17	-0.4
2,242,639	-		GFF2224	0.17	-0.4
2,242,658	-		GFF2224	0.18	-1.4
2,242,664	+		GFF2224	0.19	+0.6
2,242,671	+		GFF2224	0.20	-0.6
2,242,671	+		GFF2224	0.20	-0.7
2,242,673	+		GFF2224	0.20	-0.5
2,242,679	-		GFF2224	0.20	-1.9
2,242,679	-		GFF2224	0.20	+1.6
2,242,679	-		GFF2224	0.20	+0.4
2,242,679	-		GFF2224	0.20	-0.7
2,242,679	-		GFF2224	0.20	+0.6
2,242,694	+		GFF2224	0.21	+1.6
2,242,695	-		GFF2224	0.21	-0.7
2,242,702	-		GFF2224	0.22	+0.6
2,242,702	-		GFF2224	0.22	+0.3
2,242,702	-		GFF2224	0.22	-0.3
2,242,706	-		GFF2224	0.22	-1.6
2,242,709	+		GFF2224	0.23	-0.3
2,242,752	+		GFF2224	0.26	-1.4
2,242,756	+		GFF2224	0.26	-0.7
2,242,756	+		GFF2224	0.26	-0.7
2,242,756	+		GFF2224	0.26	-1.0
2,242,777	+		GFF2224	0.28	-1.0
2,242,782	+		GFF2224	0.29	-1.7
2,242,785	-		GFF2224	0.29	-2.1
2,242,785	-		GFF2224	0.29	+0.1
2,242,814	+		GFF2224	0.31	+1.5
2,242,822	+		GFF2224	0.32	-1.9
2,242,832	+		GFF2224	0.33	+0.4
2,242,840	-		GFF2224	0.33	+0.5
2,242,840	-		GFF2224	0.33	-0.7
2,242,840	-		GFF2224	0.33	+0.9
2,242,854	-		GFF2224	0.34	+0.2
2,242,857	+		GFF2224	0.35	-1.4
2,242,857	+		GFF2224	0.35	-1.6
2,242,857	+		GFF2224	0.35	-0.7
2,242,857	+		GFF2224	0.35	-1.9
2,242,857	+		GFF2224	0.35	-0.6
2,242,865	+		GFF2224	0.35	-2.2
2,242,865	-		GFF2224	0.35	-0.3
2,242,865	-		GFF2224	0.35	-0.3
2,242,865	-		GFF2224	0.35	+1.0
2,242,865	-		GFF2224	0.35	-0.8
2,242,865	-		GFF2224	0.35	-0.3
2,242,865	-		GFF2224	0.35	-1.5
2,242,865	-		GFF2224	0.35	-1.9
2,242,865	-		GFF2224	0.35	-0.5
2,242,865	-		GFF2224	0.35	-1.7
2,242,865	-		GFF2224	0.35	-0.3
2,242,865	-		GFF2224	0.35	-0.9
2,242,865	-		GFF2224	0.35	+1.1
2,242,876	+		GFF2224	0.36	-0.3
2,242,881	+		GFF2224	0.37	-0.7
2,242,884	-		GFF2224	0.37	-1.3
2,242,884	-		GFF2224	0.37	-1.8
2,242,884	-		GFF2224	0.37	+0.0
2,242,884	-		GFF2224	0.37	+0.1
2,242,884	-		GFF2224	0.37	+0.1
2,242,889	+		GFF2224	0.37	+0.3
2,242,895	+		GFF2224	0.38	+0.3
2,242,920	+		GFF2224	0.40	-0.8
2,242,932	+		GFF2224	0.41	-0.4
2,242,993	-		GFF2224	0.46	-0.4
2,242,999	+		GFF2224	0.46	-1.9
2,243,007	-		GFF2224	0.47	+0.9
2,243,008	+		GFF2224	0.47	-1.3
2,243,022	+		GFF2224	0.48	-1.4
2,243,041	+		GFF2224	0.50	+0.1
2,243,067	+		GFF2224	0.52	+0.0
2,243,085	+		GFF2224	0.53	-1.8
2,243,085	+		GFF2224	0.53	+0.1
2,243,093	-		GFF2224	0.54	-1.3
2,243,093	-		GFF2224	0.54	+0.8
2,243,093	-		GFF2224	0.54	-1.5
2,243,157	-		GFF2224	0.59	-0.7
2,243,182	+		GFF2224	0.61	-0.8
2,243,209	+		GFF2224	0.63	-1.4
2,243,212	-		GFF2224	0.63	+0.6
2,243,226	-		GFF2224	0.65	-0.9
2,243,243	-		GFF2224	0.66	-1.0
2,243,281	+		GFF2224	0.69	-1.5
2,243,281	+		GFF2224	0.69	+1.3
2,243,316	-		GFF2224	0.72	+0.8
2,243,318	+		GFF2224	0.72	+0.9
2,243,318	+		GFF2224	0.72	-0.3
2,243,318	+		GFF2224	0.72	-1.3
2,243,318	+		GFF2224	0.72	+0.7
2,243,326	-		GFF2224	0.73	-0.6
2,243,326	-		GFF2224	0.73	-0.7
2,243,326	-		GFF2224	0.73	+0.6
2,243,326	-		GFF2224	0.73	+0.8
2,243,326	-		GFF2224	0.73	-0.3
2,243,326	-		GFF2224	0.73	-1.7
2,243,326	-		GFF2224	0.73	-0.4
2,243,326	-		GFF2224	0.73	-1.1
2,243,342	+		GFF2224	0.74	+1.1
2,243,357	-		GFF2224	0.75	+0.0
2,243,372	+		GFF2224	0.77	-0.3
2,243,377	+		GFF2224	0.77	-0.3
2,243,377	+		GFF2224	0.77	-0.4
2,243,377	+		GFF2224	0.77	+0.0
2,243,377	+		GFF2224	0.77	+1.3
2,243,377	+		GFF2224	0.77	-1.1
2,243,385	-		GFF2224	0.78	-0.9
2,243,385	-		GFF2224	0.78	-1.2
2,243,385	-		GFF2224	0.78	-1.5
2,243,385	-		GFF2224	0.78	-0.7
2,243,385	-		GFF2224	0.78	+0.8
2,243,385	-		GFF2224	0.78	-1.2
2,243,385	-		GFF2224	0.78	-0.7
2,243,385	-		GFF2224	0.78	-1.0
2,243,385	-		GFF2224	0.78	+0.8
2,243,387	-		GFF2224	0.78	-0.1
2,243,398	+		GFF2224	0.79	-0.9
2,243,413	+		GFF2224	0.80	+1.5
2,243,423	+		GFF2224	0.81	-1.3
2,243,426	-		GFF2224	0.81	-1.0
2,243,431	-		GFF2224	0.81	-0.5
2,243,431	-		GFF2224	0.81	+0.2
2,243,431	-		GFF2224	0.81	+0.6
2,243,433	+		GFF2224	0.81	-1.0
2,243,438	+		GFF2224	0.82	+1.7
2,243,438	+		GFF2224	0.82	-0.5
2,243,438	+		GFF2224	0.82	+0.3
2,243,506	+		GFF2224	0.87	-0.2
2,243,513	-		GFF2224	0.88	-0.4
2,243,515	-		GFF2224	0.88	-0.4
2,243,515	-		GFF2224	0.88	-1.2
2,243,528	+		GFF2224	0.89	-0.4
2,243,531	-		GFF2224	0.89	-0.5
2,243,536	-		GFF2224	0.90	-0.8
2,243,558	-				+0.4
2,243,568	+				-1.5
2,243,568	+				-0.7
2,243,568	+				-1.1
2,243,576	-				-1.2
2,243,581	-				-1.3
2,243,585	+				+0.0
2,243,587	+				-0.2
2,243,587	+				+0.4
2,243,593	-				-0.9
2,243,595	-				-1.6
2,243,595	-				+0.7
2,243,600	-				-0.6
2,243,608	+				+0.6
2,243,616	-				+0.8
2,243,624	+				-1.5
2,243,640	+				-1.5
2,243,640	+				+0.8
2,243,640	+				+0.5
2,243,640	+				+0.0
2,243,640	+				-0.7
2,243,640	+				-0.2
2,243,658	-				-0.9
2,243,658	-				-1.0
2,243,663	+				+0.8
2,243,716	+				-1.6
2,243,724	+				-0.9
2,243,725	-				-1.6
2,243,739	+				-0.8
2,243,741	+				-1.5
2,243,749	-				-2.6
2,243,772	-				-1.2
2,243,793	-				-1.2
2,243,793	-				-0.4
2,243,814	+				-1.9
2,243,821	+				-0.5
2,243,821	+				+0.3
2,243,821	+				-2.9
2,243,821	+				+0.3
2,243,821	+				-0.8
2,243,821	+				-0.8
2,243,821	+				-0.1
2,243,821	+				-2.3
2,243,821	+				-0.3
2,243,821	+				+0.2
2,243,821	+				-0.3
2,243,822	-				-0.2
2,243,822	-				+0.8
2,243,822	-				-1.0
2,243,822	-				+0.5
2,243,823	-				-0.9
2,243,829	-				-1.7
2,243,829	-				-0.6
2,243,829	-				+0.5
2,243,829	-				-0.2
2,243,829	-				-1.6
2,243,829	-				+0.6
2,243,829	-				+1.1
2,243,829	-				-1.8
2,243,829	-				-1.0
2,243,836	+				-1.3
2,243,876	+				-0.7
2,243,881	+				+0.3
2,243,887	+				+0.2
2,243,889	-				-1.6
2,243,892	+				-1.0
2,243,895	-				-0.3
2,243,899	+				-0.9
2,243,906	+				-0.3
2,243,907	-				-0.3
2,243,919	-				-1.7
2,243,923	+				-1.2
2,243,927	+				-2.1
2,243,931	-				-0.4
2,243,931	-				+0.0
2,243,931	-				-1.2
2,243,931	-				+0.3
2,243,936	-				-1.4
2,243,936	-				-0.1
2,243,936	-				+0.1
2,243,959	+				+0.7
2,243,960	+				-0.6
2,243,960	+				+0.5
2,243,960	+				+0.4
2,243,960	+				-0.7
2,243,960	+				+0.8
2,243,960	+				+0.3
2,243,960	+				-0.5
2,243,960	+				-0.5
2,243,960	+				+0.0
2,243,960	+				+0.6
2,243,967	-				-0.2
2,243,968	-				+0.1
2,243,968	-				-0.6
2,243,968	-				-0.3
2,243,968	-				-1.3
2,243,968	-				-2.5
2,243,968	-				-0.6
2,243,968	-				-1.1
2,243,968	-				-1.5
2,243,968	-				-0.9
2,243,993	+				-0.1
2,244,015	+				-0.7
2,244,020	+				-0.6
2,244,020	+				+0.9
2,244,020	+				-0.9
2,244,034	-				+0.5
2,244,037	+				-2.4
2,244,045	-				-0.3
2,244,045	-				+0.7
2,244,060	+				+0.1
2,244,079	+				-0.2
2,244,079	+				+0.0
2,244,079	+				+0.5
2,244,079	+				+0.2
2,244,085	-				-0.6
2,244,087	-				-2.4
2,244,121	+				-0.8
2,244,126	-				-0.5
2,244,144	+				-0.2
2,244,144	+				-1.0
2,244,144	+				+0.2
2,244,144	+				+0.5
2,244,150	-				-1.2
2,244,152	-				+0.3
2,244,160	-				-0.5
2,244,173	-				-0.9
2,244,183	-				+0.9
2,244,186	+				-1.2
2,244,189	-				-1.0
2,244,191	+				-2.2
2,244,191	+				-0.5
2,244,194	-				+0.4
2,244,199	-				+0.3
2,244,218	+				-0.1
2,244,218	+				-1.5
2,244,218	-				-2.1
2,244,226	-				+0.1
2,244,226	-				+0.1
2,244,226	-				-1.0
2,244,231	+				-1.1
2,244,235	-				-1.4
2,244,258	+				+0.0
2,244,270	+				-1.1
2,244,278	-				-1.9
2,244,278	-				+0.6
2,244,287	+				-0.6
2,244,310	-				-1.5
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