Strain Fitness in Sphingobium sp. HT1-2 around GFF2190

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,204,764	-		GFF2188	0.70	+0.1
2,204,764	-		GFF2188	0.70	+0.7
2,204,764	-		GFF2188	0.70	-0.5
2,204,764	-		GFF2188	0.70	+0.1
2,204,764	-		GFF2188	0.70	+0.9
2,204,786	+		GFF2188	0.71	-1.0
2,204,794	+		GFF2188	0.71	-0.9
2,204,798	+		GFF2188	0.72	-1.3
2,204,817	+		GFF2188	0.73	+0.3
2,204,845	+		GFF2188	0.74	-0.3
2,204,892	+		GFF2188	0.77	-0.3
2,204,901	-		GFF2188	0.77	-1.2
2,204,901	-		GFF2188	0.77	-0.4
2,204,920	+		GFF2188	0.78	-0.7
2,204,922	+		GFF2188	0.79	-0.4
2,204,934	+		GFF2188	0.79	-0.3
2,204,942	-		GFF2188	0.80	+0.7
2,204,942	-		GFF2188	0.80	-1.4
2,204,990	-		GFF2188	0.82	-1.4
2,205,002	+		GFF2188	0.83	+0.2
2,205,010	-		GFF2188	0.83	-0.3
2,205,019	+		GFF2188	0.84	-0.3
2,205,029	-		GFF2188	0.84	-0.4
2,205,059	+		GFF2188	0.86	+0.6
2,205,122	+		GFF2188	0.90	-0.7
2,205,122	+		GFF2188	0.90	-0.8
2,205,122	+		GFF2188	0.90	-0.7
2,205,122	+		GFF2188	0.90	-0.3
2,205,130	-		GFF2188	0.90	+0.4
2,205,130	-		GFF2188	0.90	-1.2
2,205,130	-		GFF2188	0.90	-0.9
2,205,130	-		GFF2188	0.90	+0.3
2,205,130	-		GFF2188	0.90	-0.9
2,205,140	-				+0.4
2,205,152	+				-1.9
2,205,152	+				-0.6
2,205,154	+				-1.7
2,205,154	+				-1.0
2,205,157	+				-1.4
2,205,160	-				-0.5
2,205,162	-				+0.1
2,205,162	-				-0.6
2,205,167	+				-0.6
2,205,167	-				+1.2
2,205,179	+				+1.3
2,205,181	+				+0.2
2,205,204	-				-0.3
2,205,209	+				-0.4
2,205,209	+				-0.2
2,205,218	-				-0.1
2,205,234	-				-0.1
2,205,238	+				-0.4
2,205,255	-				-0.7
2,205,264	+				-0.4
2,205,266	+				-0.9
2,205,266	+				-1.1
2,205,266	+				-0.2
2,205,266	+				-0.3
2,205,266	+				+0.8
2,205,266	+				+0.8
2,205,266	+				+1.1
2,205,266	+				-1.0
2,205,266	+				-0.5
2,205,266	+				+0.2
2,205,266	+				+0.1
2,205,272	-				-0.1
2,205,273	-				-1.0
2,205,274	-				-0.6
2,205,274	-				-1.7
2,205,274	-				-1.4
2,205,274	-				-0.4
2,205,274	-				-0.8
2,205,274	-				-0.6
2,205,274	-				-1.6
2,205,284	-				-1.6
2,205,287	+				+0.4
2,205,287	+				-0.9
2,205,287	+				+1.3
2,205,295	-				-2.5
2,205,307	+				-0.9
2,205,313	+				-0.6
2,205,313	+				-0.5
2,205,313	+				-0.6
2,205,313	+				+0.3
2,205,313	+				+0.5
2,205,313	+				+1.2
2,205,321	-				-1.2
2,205,321	-				+0.2
2,205,321	-				+0.4
2,205,321	-				-0.3
2,205,321	-				-0.7
2,205,351	-		GFF2189	0.10	-0.2
2,205,372	+		GFF2189	0.15	-0.8
2,205,372	+		GFF2189	0.15	+0.3
2,205,386	-		GFF2189	0.18	-0.9
2,205,395	-		GFF2189	0.20	-0.9
2,205,403	-		GFF2189	0.21	-1.3
2,205,424	+		GFF2189	0.26	-0.4
2,205,439	-		GFF2189	0.29	-1.3
2,205,451	+		GFF2189	0.32	-1.6
2,205,451	+		GFF2189	0.32	-0.9
2,205,451	+		GFF2189	0.32	-0.7
2,205,451	+		GFF2189	0.32	-0.9
2,205,451	+		GFF2189	0.32	-1.3
2,205,451	+		GFF2189	0.32	-0.6
2,205,451	+		GFF2189	0.32	+0.1
2,205,451	+		GFF2189	0.32	-1.3
2,205,459	-		GFF2189	0.34	-1.0
2,205,459	-		GFF2189	0.34	+0.6
2,205,459	-		GFF2189	0.34	+0.9
2,205,459	-		GFF2189	0.34	-0.7
2,205,459	-		GFF2189	0.34	+0.3
2,205,459	-		GFF2189	0.34	-0.1
2,205,459	-		GFF2189	0.34	-0.6
2,205,459	-		GFF2189	0.34	-0.3
2,205,466	+		GFF2189	0.35	+0.0
2,205,466	+		GFF2189	0.35	+1.0
2,205,490	+		GFF2189	0.41	+0.5
2,205,490	-		GFF2189	0.41	+1.1
2,205,490	-		GFF2189	0.41	-0.4
2,205,498	+		GFF2189	0.42	-1.6
2,205,498	-		GFF2189	0.42	-0.6
2,205,502	+		GFF2189	0.43	-0.2
2,205,506	-		GFF2189	0.44	-0.7
2,205,506	-		GFF2189	0.44	-1.0
2,205,506	-		GFF2189	0.44	-1.4
2,205,508	+		GFF2189	0.45	+1.3
2,205,510	-		GFF2189	0.45	-0.3
2,205,541	-		GFF2189	0.52	+1.8
2,205,551	+		GFF2189	0.54	+0.1
2,205,557	+		GFF2189	0.55	-1.6
2,205,557	+		GFF2189	0.55	-1.3
2,205,557	+		GFF2189	0.55	-1.4
2,205,557	-		GFF2189	0.55	-0.5
2,205,559	-		GFF2189	0.56	+0.1
2,205,570	+		GFF2189	0.58	-1.8
2,205,578	-		GFF2189	0.60	-0.6
2,205,578	-		GFF2189	0.60	-1.0
2,205,580	+		GFF2189	0.60	+0.4
2,205,591	-		GFF2189	0.63	-0.9
2,205,593	-		GFF2189	0.63	-0.3
2,205,599	-		GFF2189	0.64	-0.9
2,205,604	-		GFF2189	0.66	-1.7
2,205,618	+		GFF2189	0.69	-0.1
2,205,623	+		GFF2189	0.70	-0.4
2,205,638	+		GFF2189	0.73	+0.5
2,205,646	+		GFF2189	0.75	+0.5
2,205,680	-		GFF2189	0.82	-1.5
2,205,696	-		GFF2189	0.86	-0.1
2,205,696	-		GFF2189	0.86	-1.8
2,205,697	-		GFF2189	0.86	-0.3
2,205,702	+		GFF2189	0.87	-0.5
2,205,719	-				-0.7
2,205,726	+				+0.8
2,205,732	+				+0.1
2,205,742	+				+0.6
2,205,742	+				+0.3
2,205,742	+				-1.0
2,205,742	+				-1.4
2,205,742	+				+0.7
2,205,750	-				-0.9
2,205,750	-				-2.0
2,205,750	-				-1.0
2,205,750	-				-2.5
2,205,750	-				-0.7
2,205,750	-				+1.1
2,205,750	-				+0.3
2,205,750	-				+0.7
2,205,750	-				-0.2
2,205,762	+				-1.3
2,205,770	-				-1.7
2,205,770	-				+0.6
2,205,770	-				-0.5
2,205,775	-				-1.5
2,205,776	+				-0.9
2,205,791	+				+0.6
2,205,817	+		GFF2190	0.11	+0.0
2,205,817	+		GFF2190	0.11	-1.4
2,205,817	+		GFF2190	0.11	+0.5
2,205,817	+		GFF2190	0.11	-1.0
2,205,817	+		GFF2190	0.11	-1.4
2,205,820	-		GFF2190	0.12	-1.1
2,205,825	-		GFF2190	0.13	+1.3
2,205,825	-		GFF2190	0.13	-2.0
2,205,825	-		GFF2190	0.13	-1.9
2,205,825	-		GFF2190	0.13	-0.9
2,205,825	-		GFF2190	0.13	+0.3
2,205,825	-		GFF2190	0.13	-1.0
2,205,825	-		GFF2190	0.13	-1.0
2,205,825	-		GFF2190	0.13	-1.4
2,205,834	-		GFF2190	0.15	+0.0
2,205,837	-		GFF2190	0.15	-0.3
2,205,837	-		GFF2190	0.15	-1.1
2,205,885	+		GFF2190	0.25	-1.3
2,205,886	-		GFF2190	0.25	+0.2
2,205,893	-		GFF2190	0.26	-1.0
2,205,910	+		GFF2190	0.30	-0.0
2,205,910	+		GFF2190	0.30	-1.0
2,205,910	+		GFF2190	0.30	+0.9
2,205,910	+		GFF2190	0.30	-1.3
2,205,915	+		GFF2190	0.31	-1.0
2,205,918	-		GFF2190	0.31	-0.1
2,205,918	-		GFF2190	0.31	-1.0
2,205,929	+		GFF2190	0.34	-0.3
2,205,929	+		GFF2190	0.34	-1.0
2,205,937	-		GFF2190	0.35	-0.0
2,205,947	+		GFF2190	0.37	-0.6
2,205,984	-		GFF2190	0.44	-0.5
2,206,000	+		GFF2190	0.48	-1.2
2,206,006	+		GFF2190	0.49	+0.5
2,206,009	-		GFF2190	0.49	-0.4
2,206,039	+		GFF2190	0.55	-1.0
2,206,094	+		GFF2190	0.66	+1.5
2,206,123	-		GFF2190	0.72	-0.3
2,206,123	-		GFF2190	0.72	+1.9
2,206,139	-		GFF2190	0.75	-0.5
2,206,164	+		GFF2190	0.80	-0.4
2,206,164	+		GFF2190	0.80	-1.2
2,206,164	+		GFF2190	0.80	-0.6
2,206,164	+		GFF2190	0.80	-0.9
2,206,166	-		GFF2190	0.81	+0.0
2,206,172	-		GFF2190	0.82	-0.3
2,206,172	-		GFF2190	0.82	-0.4
2,206,172	-		GFF2190	0.82	-0.1
2,206,172	-		GFF2190	0.82	-1.3
2,206,172	-		GFF2190	0.82	+0.9
2,206,172	-		GFF2190	0.82	+0.7
2,206,172	-		GFF2190	0.82	-0.6
2,206,172	-		GFF2190	0.82	-0.7
2,206,172	-		GFF2190	0.82	-0.6
2,206,194	-		GFF2190	0.86	-2.0
2,206,208	-		GFF2190	0.89	-1.0
2,206,215	+				-1.2
2,206,218	-				-1.2
2,206,218	-				-0.1
2,206,223	-				-0.3
2,206,223	-				+0.0
2,206,225	-				-0.9
2,206,228	-				-0.6
2,206,228	-				-1.6
2,206,230	+				-0.4
2,206,242	-				+2.2
2,206,260	-				-1.4
2,206,262	-				-1.7
2,206,286	+				-1.7
2,206,298	+				-0.2
2,206,299	-				-1.1
2,206,341	+		GFF2191	0.20	+0.5
2,206,349	-		GFF2191	0.22	+0.3
2,206,349	-		GFF2191	0.22	-0.8
2,206,349	-		GFF2191	0.22	+0.1
2,206,381	+		GFF2191	0.31	-0.4
2,206,381	+		GFF2191	0.31	+0.7
2,206,381	+		GFF2191	0.31	-1.1
2,206,381	+		GFF2191	0.31	-1.2
2,206,381	+		GFF2191	0.31	-1.5
2,206,389	-		GFF2191	0.33	+0.1
2,206,389	-		GFF2191	0.33	-1.3
2,206,428	+		GFF2191	0.44	+0.5
2,206,447	+		GFF2191	0.49	-0.6
2,206,499	+		GFF2191	0.63	-1.0
2,206,559	-		GFF2191	0.80	+0.9
2,206,585	+		GFF2191	0.87	+1.7
2,206,608	-				-0.4
2,206,609	+				-1.3
2,206,609	-				-0.4
2,206,609	-				+1.5
2,206,624	-				+0.7
2,206,627	+				-1.5
2,206,627	+				-2.2
2,206,635	+				-0.7
2,206,635	+				+0.2
2,206,635	+				+0.2
2,206,643	-				-0.5
2,206,643	-				+0.5
2,206,643	-				-0.9
2,206,643	-				+0.2
2,206,643	-				-0.8
2,206,643	-				-0.8
2,206,663	+				+0.1
2,206,682	+				+0.2
2,206,685	-				-0.1
2,206,689	+				-0.1
2,206,689	+				+0.5
2,206,692	-				-0.4
2,206,695	-				-1.3
2,206,695	-				+0.3
2,206,697	+				-1.3
2,206,697	-				+0.8
2,206,697	-				-0.5
2,206,697	-				-1.1
2,206,705	-				-1.5
2,206,711	-				-0.1
2,206,714	+				-0.6
2,206,714	+				-0.9
2,206,714	+				+0.4
2,206,714	+				+0.5
2,206,714	+				+0.6
2,206,719	+				-2.3
2,206,719	+				+0.2
2,206,722	-				-0.3
2,206,722	-				-0.4
2,206,722	-				+1.5
2,206,722	-				-0.3
2,206,722	-				-0.4
2,206,734	+				-0.9
2,206,771	+				-0.9
2,206,785	-				-1.4
2,206,786	-				-0.7
2,206,792	+				-0.3
2,206,792	-				+1.2
2,206,792	-				+0.8
2,206,792	-				-0.8
2,206,797	-				-0.8
2,206,800	-				-0.5
2,206,824	+				+0.2
2,206,830	+				-0.1
2,206,830	+				-0.7
2,206,830	+				-0.2
2,206,832	-				-1.1
2,206,836	+				-1.0
2,206,838	-				-0.5
2,206,838	-				-0.3
2,206,838	-				+0.6
2,206,854	-				-1.5
2,206,857	+				-1.8
2,206,865	-				-0.4
2,206,865	-				+0.8
2,206,872	+				-0.7
2,206,873	+				-0.3
2,206,879	+				+1.1
2,206,881	-				-0.6
2,206,881	-				-0.4
2,206,881	-				-0.3
2,206,881	-				+0.4
2,206,884	+		GFF2192	0.10	+0.9
2,206,897	-		GFF2192	0.11	+0.2
2,206,899	+		GFF2192	0.11	-0.5
2,206,907	-		GFF2192	0.11	+0.7
2,206,932	+		GFF2192	0.12	+0.9
2,206,940	-		GFF2192	0.13	-0.8
2,206,945	+		GFF2192	0.13	-2.3
2,206,951	-		GFF2192	0.13	-0.2
2,206,991	+		GFF2192	0.15	-0.6
2,207,001	+		GFF2192	0.16	+0.1
2,207,030	+		GFF2192	0.17	-0.4
2,207,038	-		GFF2192	0.17	-1.4
2,207,038	-		GFF2192	0.17	-0.7
2,207,038	-		GFF2192	0.17	+0.9
2,207,038	-		GFF2192	0.17	-0.7
2,207,079	+		GFF2192	0.19	-0.5
2,207,129	+		GFF2192	0.22	-1.4
2,207,139	+		GFF2192	0.22	-1.3
2,207,144	+		GFF2192	0.22	-0.8
2,207,147	-		GFF2192	0.23	-2.0
2,207,147	-		GFF2192	0.23	+0.4
2,207,156	+		GFF2192	0.23	-1.4
2,207,174	+		GFF2192	0.24	+0.6
2,207,182	-		GFF2192	0.24	+2.4
2,207,182	-		GFF2192	0.24	-1.4
2,207,182	-		GFF2192	0.24	-1.1
2,207,182	-		GFF2192	0.24	-2.0
2,207,186	-		GFF2192	0.24	-0.3
2,207,188	-		GFF2192	0.25	-0.6
2,207,200	+		GFF2192	0.25	-1.3
2,207,200	+		GFF2192	0.25	-0.8
2,207,200	+		GFF2192	0.25	-1.9
2,207,205	+		GFF2192	0.25	+0.5
2,207,205	+		GFF2192	0.25	+0.6
2,207,205	+		GFF2192	0.25	-0.5
2,207,205	+		GFF2192	0.25	+0.6
2,207,205	+		GFF2192	0.25	-1.3
2,207,205	+		GFF2192	0.25	-0.3
2,207,205	+		GFF2192	0.25	-0.8
2,207,205	+		GFF2192	0.25	-1.9
2,207,208	-		GFF2192	0.25	-0.6
2,207,208	-		GFF2192	0.25	-0.3
2,207,213	-		GFF2192	0.26	+0.3
2,207,213	-		GFF2192	0.26	-0.3
2,207,213	-		GFF2192	0.26	-0.9
2,207,213	-		GFF2192	0.26	-1.0
2,207,213	-		GFF2192	0.26	-1.6
2,207,213	-		GFF2192	0.26	-1.9
2,207,213	-		GFF2192	0.26	+0.9
2,207,213	-		GFF2192	0.26	+0.8
2,207,228	+		GFF2192	0.26	-0.4
2,207,257	+		GFF2192	0.28	-1.4
2,207,262	+		GFF2192	0.28	-1.0