Strain Fitness in Sphingobium sp. HT1-2 around GFF2177

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,193,808	+		GFF2175	0.51	-1.4
2,193,824	-		GFF2175	0.52	+0.3
2,193,834	+		GFF2175	0.53	-1.0
2,193,866	+		GFF2175	0.55	-1.6
2,193,866	+		GFF2175	0.55	-0.6
2,193,866	+		GFF2175	0.55	+0.6
2,193,871	+		GFF2175	0.56	+0.6
2,193,874	-		GFF2175	0.56	+1.0
2,193,874	-		GFF2175	0.56	-1.0
2,193,874	-		GFF2175	0.56	+0.3
2,193,874	-		GFF2175	0.56	+0.9
2,193,874	-		GFF2175	0.56	-0.6
2,193,874	-		GFF2175	0.56	-1.4
2,193,874	-		GFF2175	0.56	-0.7
2,193,874	-		GFF2175	0.56	-1.2
2,193,874	-		GFF2175	0.56	-0.5
2,193,874	-		GFF2175	0.56	-1.5
2,193,874	-		GFF2175	0.56	-1.3
2,193,877	+		GFF2175	0.56	-0.6
2,193,879	-		GFF2175	0.56	-1.2
2,193,881	+		GFF2175	0.56	-0.6
2,193,900	+		GFF2175	0.57	-0.6
2,193,901	+		GFF2175	0.58	-0.3
2,193,908	-		GFF2175	0.58	-1.0
2,193,908	-		GFF2175	0.58	-1.0
2,193,909	-		GFF2175	0.58	-0.2
2,193,914	+		GFF2175	0.58	+0.0
2,193,914	+		GFF2175	0.58	-0.3
2,193,917	-		GFF2175	0.59	+0.1
2,193,922	+		GFF2175	0.59	-2.0
2,193,922	-		GFF2175	0.59	-0.7
2,193,927	+		GFF2175	0.59	-0.3
2,193,934	+		GFF2175	0.60	-0.9
2,193,934	+		GFF2175	0.60	-2.3
2,193,934	+		GFF2175	0.60	-0.7
2,193,934	+		GFF2175	0.60	-0.6
2,193,934	+		GFF2175	0.60	-0.7
2,193,935	-		GFF2175	0.60	-0.9
2,193,936	+		GFF2175	0.60	-0.7
2,193,942	-		GFF2175	0.60	-0.7
2,193,942	-		GFF2175	0.60	+1.0
2,193,942	-		GFF2175	0.60	+0.6
2,193,944	+		GFF2175	0.60	-1.4
2,193,949	-		GFF2175	0.61	-0.4
2,193,951	+		GFF2175	0.61	+1.3
2,193,951	+		GFF2175	0.61	-1.8
2,193,956	+		GFF2175	0.61	-2.6
2,193,956	+		GFF2175	0.61	+1.1
2,193,956	+		GFF2175	0.61	-0.6
2,193,959	-		GFF2175	0.61	-0.8
2,193,959	-		GFF2175	0.61	-2.0
2,193,959	-		GFF2175	0.61	+0.3
2,193,959	-		GFF2175	0.61	-1.7
2,193,964	-		GFF2175	0.62	+0.9
2,193,997	+		GFF2175	0.64	+0.1
2,194,002	+		GFF2175	0.64	-1.3
2,194,002	+		GFF2175	0.64	+1.1
2,194,010	-		GFF2175	0.65	-1.0
2,194,010	-		GFF2175	0.65	+0.4
2,194,010	-		GFF2175	0.65	+0.7
2,194,010	-		GFF2175	0.65	-0.4
2,194,010	-		GFF2175	0.65	+0.9
2,194,030	-		GFF2175	0.66	-0.1
2,194,045	-		GFF2175	0.67	-0.9
2,194,045	-		GFF2175	0.67	-0.5
2,194,056	+		GFF2175	0.68	-0.8
2,194,083	+		GFF2175	0.70	-1.9
2,194,091	-		GFF2175	0.70	+1.3
2,194,093	+		GFF2175	0.70	+1.3
2,194,144	-		GFF2175	0.74	-1.5
2,194,174	-		GFF2175	0.76	+0.4
2,194,204	+		GFF2175	0.78	-0.3
2,194,204	+		GFF2175	0.78	-0.5
2,194,209	+		GFF2175	0.78	+0.2
2,194,222	+		GFF2175	0.79	-0.1
2,194,260	-		GFF2175	0.81	-1.0
2,194,268	+		GFF2175	0.82	-1.8
2,194,268	+		GFF2175	0.82	-0.0
2,194,269	-		GFF2175	0.82	-1.1
2,194,274	+		GFF2175	0.82	-0.2
2,194,276	+		GFF2175	0.83	+0.7
2,194,276	-		GFF2175	0.83	-1.4
2,194,300	+		GFF2175	0.84	-0.3
2,194,300	+		GFF2175	0.84	+0.9
2,194,300	+		GFF2175	0.84	+0.5
2,194,308	-		GFF2175	0.85	-0.0
2,194,308	-		GFF2175	0.85	+0.1
2,194,309	-		GFF2175	0.85	-0.7
2,194,328	+		GFF2175	0.86	-1.7
2,194,354	-		GFF2175	0.88	-1.8
2,194,356	-		GFF2175	0.88	-1.0
2,194,358	+		GFF2175	0.88	+0.4
2,194,383	+		GFF2175	0.90	-0.6
2,194,401	+				-2.0
2,194,406	+				-0.3
2,194,406	+				-0.3
2,194,409	-				+0.3
2,194,409	-				-0.7
2,194,409	-				-1.3
2,194,414	-				-0.5
2,194,414	-				-0.3
2,194,428	+				-2.0
2,194,428	+				+0.8
2,194,428	+				-0.3
2,194,436	-				-1.1
2,194,471	+				-0.4
2,194,476	+				-1.0
2,194,479	-				-1.6
2,194,484	-				+0.3
2,194,503	+				-0.3
2,194,525	+				-0.8
2,194,525	+				-0.3
2,194,533	-				-0.3
2,194,533	-				+0.7
2,194,535	-				+0.3
2,194,562	-		GFF2176	0.12	-1.1
2,194,601	-		GFF2176	0.30	+0.9
2,194,607	+		GFF2176	0.33	-0.7
2,194,615	-		GFF2176	0.37	+1.9
2,194,626	+		GFF2176	0.42	-1.1
2,194,626	+		GFF2176	0.42	-1.7
2,194,658	+		GFF2176	0.56	-1.3
2,194,658	+		GFF2176	0.56	-0.4
2,194,666	-		GFF2176	0.60	-1.0
2,194,666	-		GFF2176	0.60	-1.3
2,194,669	+		GFF2176	0.62	-0.7
2,194,669	+		GFF2176	0.62	+0.5
2,194,669	+		GFF2176	0.62	-0.2
2,194,669	+		GFF2176	0.62	-1.5
2,194,705	+		GFF2176	0.78	-0.9
2,194,726	-		GFF2176	0.88	+0.6
2,194,745	+				-0.7
2,194,745	+				-1.7
2,194,754	-				-1.7
2,194,761	+				+1.1
2,194,782	+				+0.2
2,194,795	+				-1.4
2,194,796	-				+0.9
2,194,798	-				+0.2
2,194,798	-				-0.9
2,194,824	+				+0.2
2,194,832	-		GFF2177	0.13	-0.3
2,194,841	+		GFF2177	0.17	+0.6
2,194,841	+		GFF2177	0.17	+0.3
2,194,841	+		GFF2177	0.17	-0.9
2,194,859	-		GFF2177	0.25	+2.1
2,194,861	+		GFF2177	0.26	+0.2
2,194,869	-		GFF2177	0.30	+0.7
2,194,901	+		GFF2177	0.45	-1.2
2,194,902	+		GFF2177	0.46	-0.6
2,194,921	-		GFF2177	0.54	+0.4
2,194,922	-		GFF2177	0.55	-0.3
2,194,944	+		GFF2177	0.65	+0.0
2,195,006	+				+0.5
2,195,006	+				-0.9
2,195,006	+				-1.5
2,195,011	+				-1.0
2,195,014	-				-1.3
2,195,014	-				+1.0
2,195,014	-				-2.0
2,195,014	-				-1.0
2,195,014	-				-0.2
2,195,019	-				+0.5
2,195,019	-				-1.6
2,195,050	-				-0.9
2,195,082	-				+0.4
2,195,092	+				-0.7
2,195,132	+		GFF2178	0.21	+2.1
2,195,132	+		GFF2178	0.21	+1.1
2,195,132	+		GFF2178	0.21	+0.7
2,195,140	-		GFF2178	0.24	+0.2
2,195,145	-		GFF2178	0.26	+0.4
2,195,147	-		GFF2178	0.26	-0.4
2,195,154	-		GFF2178	0.29	-1.6
2,195,156	+		GFF2178	0.30	-1.5
2,195,156	+		GFF2178	0.30	-0.7
2,195,164	-		GFF2178	0.33	-0.8
2,195,164	-		GFF2178	0.33	-1.7
2,195,164	-		GFF2178	0.33	-1.5
2,195,164	-		GFF2178	0.33	-1.1
2,195,178	-		GFF2178	0.38	-1.0
2,195,178	-		GFF2178	0.38	-0.9
2,195,179	+		GFF2178	0.38	-0.5
2,195,187	-		GFF2178	0.41	+0.4
2,195,187	-		GFF2178	0.41	-0.3
2,195,194	+		GFF2178	0.44	-1.4
2,195,203	-		GFF2178	0.47	-0.6
2,195,203	-		GFF2178	0.47	-2.4
2,195,208	-		GFF2178	0.49	+0.3
2,195,208	-		GFF2178	0.49	-0.3
2,195,227	+		GFF2178	0.56	+1.5
2,195,230	+		GFF2178	0.57	+1.1
2,195,240	-		GFF2178	0.61	+0.5
2,195,272	-		GFF2178	0.73	-0.6
2,195,276	-		GFF2178	0.74	-1.3
2,195,280	+		GFF2178	0.76	+0.5
2,195,280	+		GFF2178	0.76	-0.6
2,195,288	-		GFF2178	0.79	+0.5
2,195,288	-		GFF2178	0.79	-0.4
2,195,295	+		GFF2178	0.81	-0.9
2,195,301	-		GFF2178	0.83	+0.0
2,195,301	-		GFF2178	0.83	-1.5
2,195,301	-		GFF2178	0.83	-1.0
2,195,301	-		GFF2178	0.83	-0.0
2,195,301	-		GFF2178	0.83	-0.3
2,195,339	+				+0.2
2,195,344	+				-0.9
2,195,347	-				-1.0
2,195,347	-				+0.5
2,195,356	+				-0.8
2,195,396	+				+0.0
2,195,396	+				-0.7
2,195,396	+				-0.2
2,195,404	-				+0.0
2,195,404	-				-1.3
2,195,404	-				+0.1
2,195,404	-				-0.6
2,195,406	-				-0.3
2,195,406	-				-1.7
2,195,417	+				+0.0
2,195,422	+				-1.6
2,195,428	-				-0.7
2,195,432	+				+0.2
2,195,435	+				-0.4
2,195,435	-				-0.9
2,195,435	-				-0.6
2,195,435	-				+0.4
2,195,435	-				+0.7
2,195,459	+				-1.4
2,195,483	-				-0.7
2,195,485	+				-0.9
2,195,493	+				-1.6
2,195,501	-				+0.4
2,195,511	+				-0.3
2,195,519	+				+0.2
2,195,519	+				-2.0
2,195,519	-				-1.1
2,195,526	+				-0.7
2,195,537	-		GFF2179	0.11	-1.6
2,195,603	+		GFF2179	0.56	+0.2
2,195,603	+		GFF2179	0.56	-0.9
2,195,609	-		GFF2179	0.60	-0.0
2,195,640	-		GFF2179	0.81	+0.7
2,195,640	-		GFF2179	0.81	-0.3
2,195,645	-		GFF2179	0.84	-1.0
2,195,648	+		GFF2179	0.86	-0.9
2,195,678	-				-1.1
2,195,705	-				+0.5
2,195,707	+				-0.8
2,195,722	-				-0.3
2,195,730	-				-1.0
2,195,735	+				-1.3
2,195,744	+				-1.4
2,195,809	-				-1.3
2,195,827	+				+0.5
2,195,829	+				-2.4
2,195,834	+		GFF2180	0.10	+0.6
2,195,837	-		GFF2180	0.10	-2.4
2,195,842	-		GFF2180	0.11	+0.7
2,195,852	+		GFF2180	0.11	-0.8
2,195,879	+		GFF2180	0.13	-1.3
2,195,879	-		GFF2180	0.13	-1.1
2,195,879	-		GFF2180	0.13	-2.3
2,195,881	+		GFF2180	0.13	-2.0
2,195,881	-		GFF2180	0.13	-1.4
2,195,887	+		GFF2180	0.13	+1.5
2,195,887	+		GFF2180	0.13	+0.2
2,195,887	+		GFF2180	0.13	-0.5
2,195,897	+		GFF2180	0.14	-0.6
2,195,897	+		GFF2180	0.14	+1.2
2,195,912	+		GFF2180	0.15	-0.0
2,195,914	+		GFF2180	0.15	-0.4
2,195,920	-		GFF2180	0.15	+1.4
2,195,922	-		GFF2180	0.15	+0.5
2,195,946	+		GFF2180	0.17	-1.2
2,195,948	+		GFF2180	0.17	-0.0
2,195,956	+		GFF2180	0.17	+0.9
2,195,956	+		GFF2180	0.17	-1.8
2,195,964	-		GFF2180	0.18	+0.1
2,195,964	-		GFF2180	0.18	-1.7
2,195,969	-		GFF2180	0.18	-1.7
2,195,978	+		GFF2180	0.19	-0.8
2,195,978	+		GFF2180	0.19	-0.4
2,195,978	+		GFF2180	0.19	-1.5
2,195,978	+		GFF2180	0.19	-0.8
2,195,978	+		GFF2180	0.19	-1.4
2,195,978	+		GFF2180	0.19	-0.2
2,195,978	+		GFF2180	0.19	-0.8
2,195,986	-		GFF2180	0.19	+1.0
2,195,993	+		GFF2180	0.20	+1.0