Strain Fitness in Sphingobium sp. HT1-2 around GFF2038

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,071,028	-		GFF2037	0.66	-1.8
2,071,028	-		GFF2037	0.66	-0.0
2,071,028	-		GFF2037	0.66	-1.3
2,071,034	+		GFF2037	0.66	-0.7
2,071,034	+		GFF2037	0.66	+0.1
2,071,042	-		GFF2037	0.67	+1.7
2,071,051	+		GFF2037	0.67	-0.1
2,071,056	+		GFF2037	0.67	-1.7
2,071,056	+		GFF2037	0.67	+0.5
2,071,056	+		GFF2037	0.67	-0.2
2,071,064	-		GFF2037	0.68	-0.9
2,071,064	-		GFF2037	0.68	-1.2
2,071,064	-		GFF2037	0.68	-0.3
2,071,076	-		GFF2037	0.68	+0.1
2,071,086	+		GFF2037	0.68	+0.2
2,071,094	-		GFF2037	0.69	+0.2
2,071,094	-		GFF2037	0.69	+1.7
2,071,100	-		GFF2037	0.69	-1.0
2,071,105	+		GFF2037	0.69	+0.8
2,071,106	+		GFF2037	0.69	+1.2
2,071,113	-		GFF2037	0.70	-0.0
2,071,113	-		GFF2037	0.70	-0.9
2,071,125	+		GFF2037	0.70	+1.0
2,071,143	+		GFF2037	0.71	-0.4
2,071,143	+		GFF2037	0.71	-1.2
2,071,143	+		GFF2037	0.71	+0.0
2,071,143	+		GFF2037	0.71	-1.3
2,071,143	+		GFF2037	0.71	-1.4
2,071,143	+		GFF2037	0.71	-0.2
2,071,143	+		GFF2037	0.71	-0.3
2,071,143	+		GFF2037	0.71	-0.1
2,071,143	+		GFF2037	0.71	+1.3
2,071,143	+		GFF2037	0.71	-1.8
2,071,143	+		GFF2037	0.71	-0.9
2,071,151	-		GFF2037	0.71	-0.9
2,071,151	-		GFF2037	0.71	-1.5
2,071,151	-		GFF2037	0.71	-0.2
2,071,151	-		GFF2037	0.71	-0.8
2,071,151	-		GFF2037	0.71	-1.2
2,071,151	-		GFF2037	0.71	-0.6
2,071,151	-		GFF2037	0.71	+1.3
2,071,151	-		GFF2037	0.71	-1.6
2,071,151	-		GFF2037	0.71	+0.7
2,071,181	+		GFF2037	0.72	+0.1
2,071,181	+		GFF2037	0.72	-0.3
2,071,185	-		GFF2037	0.72	-0.7
2,071,189	-		GFF2037	0.73	+0.9
2,071,223	-		GFF2037	0.74	-0.3
2,071,225	+		GFF2037	0.74	-1.2
2,071,236	+		GFF2037	0.74	+1.8
2,071,236	-		GFF2037	0.74	-0.6
2,071,261	-		GFF2037	0.76	-0.4
2,071,278	-		GFF2037	0.76	-1.6
2,071,290	-		GFF2037	0.77	+0.0
2,071,317	+		GFF2037	0.78	-0.3
2,071,325	-		GFF2037	0.78	-0.5
2,071,325	-		GFF2037	0.78	+0.2
2,071,376	-		GFF2037	0.80	-0.9
2,071,385	-		GFF2037	0.81	-0.5
2,071,405	+		GFF2037	0.81	+0.1
2,071,430	-		GFF2037	0.82	-1.2
2,071,432	-		GFF2037	0.82	-0.5
2,071,435	+		GFF2037	0.83	-1.0
2,071,435	+		GFF2037	0.83	-0.2
2,071,439	-		GFF2037	0.83	-2.0
2,071,443	-		GFF2037	0.83	-2.1
2,071,445	-		GFF2037	0.83	+1.0
2,071,447	+		GFF2037	0.83	-0.5
2,071,447	+		GFF2037	0.83	-0.3
2,071,447	+		GFF2037	0.83	-0.7
2,071,455	-		GFF2037	0.83	-1.6
2,071,455	-		GFF2037	0.83	+1.0
2,071,455	-		GFF2037	0.83	-0.9
2,071,455	-		GFF2037	0.83	-0.7
2,071,455	-		GFF2037	0.83	-0.3
2,071,479	+		GFF2037	0.84	+0.3
2,071,479	+		GFF2037	0.84	-0.7
2,071,487	-		GFF2037	0.85	-0.5
2,071,487	-		GFF2037	0.85	-0.7
2,071,487	-		GFF2037	0.85	-0.9
2,071,492	-		GFF2037	0.85	+0.6
2,071,519	+		GFF2037	0.86	-0.3
2,071,525	+		GFF2037	0.86	-0.0
2,071,527	-		GFF2037	0.86	-0.6
2,071,527	-		GFF2037	0.86	-1.2
2,071,533	-		GFF2037	0.87	-0.7
2,071,553	-		GFF2037	0.87	-0.2
2,071,577	+		GFF2037	0.88	-0.5
2,071,626	+				-1.1
2,071,629	+				+0.2
2,071,643	+				+0.3
2,071,651	-				-1.7
2,071,658	+				-0.1
2,071,674	-				-0.8
2,071,711	+				-0.2
2,071,711	-				+0.2
2,071,724	-				-2.0
2,071,730	+				+0.9
2,071,738	-				-0.8
2,071,778	+				-0.7
2,071,780	-				+0.5
2,071,824	+				-0.5
2,071,843	+				-0.9
2,071,851	+				+0.4
2,071,878	+				-0.5
2,071,878	+				-0.8
2,071,880	+				-0.2
2,071,886	-				-0.6
2,071,894	-				-1.4
2,071,896	+				-0.2
2,071,897	-				-0.8
2,071,901	+				-0.7
2,071,904	-				+0.4
2,071,909	+				-1.4
2,071,909	-				-0.6
2,071,921	-				-1.2
2,071,921	-				+1.2
2,071,921	-				-1.1
2,071,921	-				-0.2
2,071,921	-				+0.1
2,071,921	-				-2.1
2,071,921	-				-0.1
2,071,938	+				+0.4
2,071,971	+				+0.6
2,071,971	+				-1.8
2,071,971	+				-0.5
2,071,979	-				-1.0
2,071,979	-				-0.9
2,071,979	-				+0.3
2,071,979	-				+0.8
2,071,981	+				+0.6
2,071,981	+				-1.4
2,071,982	+				-0.2
2,071,982	+				+0.1
2,071,982	+				-0.2
2,071,982	+				-0.7
2,071,982	+				-1.6
2,071,982	+				+0.6
2,071,982	+				-0.8
2,071,982	+				+0.1
2,071,982	+				-1.2
2,071,982	+				+1.0
2,071,982	+				-1.7
2,071,982	+				-0.7
2,071,989	-				-0.2
2,071,990	-				-0.4
2,071,990	-				+0.1
2,071,990	-				+0.3
2,071,990	-				+0.7
2,071,990	-				-0.7
2,071,990	-				-2.3
2,071,990	-				-0.6
2,071,990	-				+0.8
2,071,990	-				-1.3
2,071,990	-				-2.0
2,071,990	-				-1.1
2,071,990	-				-0.4
2,071,990	-				-1.2
2,071,990	-				-1.4
2,071,990	-				-0.6
2,071,990	-				-0.9
2,071,995	-				-1.7
2,072,054	+				+0.1
2,072,054	+				-0.7
2,072,054	+				-0.7
2,072,056	-				-0.6
2,072,057	-				-0.9
2,072,062	-				-1.9
2,072,062	-				+0.5
2,072,062	-				+0.1
2,072,062	-				-3.0
2,072,062	-				-0.2
2,072,062	-				-0.8
2,072,075	+				+0.8
2,072,075	+				-0.2
2,072,075	+				-1.6
2,072,075	+				-0.4
2,072,075	+				-1.7
2,072,075	+				+1.1
2,072,075	+				+0.6
2,072,075	+				-0.9
2,072,075	+				-0.9
2,072,075	+				-1.4
2,072,075	+				+0.5
2,072,075	+				-1.6
2,072,075	+				+1.0
2,072,075	+				-0.4
2,072,075	+				-0.7
2,072,075	+				-2.1
2,072,083	-				-0.4
2,072,083	-				-1.7
2,072,083	-				-0.2
2,072,083	-				-0.8
2,072,083	-				-0.5
2,072,083	-				+0.6
2,072,083	-				-2.9
2,072,083	-				-0.3
2,072,083	-				+0.4
2,072,083	-				-0.9
2,072,083	-				-0.1
2,072,083	-				+0.2
2,072,083	-				+1.6
2,072,083	-				-0.1
2,072,083	-				-0.0
2,072,083	-				-1.2
2,072,083	-				+0.1
2,072,083	-				-1.0
2,072,127	+		GFF2038	0.12	+0.3
2,072,127	+		GFF2038	0.12	-0.5
2,072,127	+		GFF2038	0.12	+0.4
2,072,131	-		GFF2038	0.12	-0.8
2,072,135	-		GFF2038	0.13	+1.0
2,072,135	-		GFF2038	0.13	-1.2
2,072,181	+		GFF2038	0.16	-0.4
2,072,184	-		GFF2038	0.17	-2.2
2,072,184	-		GFF2038	0.17	+0.1
2,072,184	-		GFF2038	0.17	-0.0
2,072,212	+		GFF2038	0.19	+1.1
2,072,223	-		GFF2038	0.20	-1.7
2,072,236	+		GFF2038	0.21	-1.2
2,072,254	+		GFF2038	0.22	-0.5
2,072,254	+		GFF2038	0.22	+0.2
2,072,259	+		GFF2038	0.23	+0.6
2,072,262	-		GFF2038	0.23	-2.3
2,072,267	-		GFF2038	0.23	-0.0
2,072,267	-		GFF2038	0.23	-1.4
2,072,275	-		GFF2038	0.24	-1.5
2,072,285	+		GFF2038	0.25	-1.5
2,072,293	-		GFF2038	0.26	-1.0
2,072,317	-		GFF2038	0.28	-1.2
2,072,324	-		GFF2038	0.28	+0.7
2,072,371	+		GFF2038	0.32	-1.8
2,072,374	-		GFF2038	0.32	+0.7
2,072,380	+		GFF2038	0.33	+0.4
2,072,412	+		GFF2038	0.35	+0.4
2,072,417	+		GFF2038	0.36	-0.0
2,072,420	-		GFF2038	0.36	+0.2
2,072,442	+		GFF2038	0.38	-0.2
2,072,450	-		GFF2038	0.39	-1.4
2,072,450	-		GFF2038	0.39	-2.1
2,072,450	-		GFF2038	0.39	-0.6
2,072,450	-		GFF2038	0.39	+0.7
2,072,450	-		GFF2038	0.39	-0.2
2,072,450	-		GFF2038	0.39	-0.4
2,072,460	-		GFF2038	0.39	-0.7
2,072,471	-		GFF2038	0.40	-1.6
2,072,471	-		GFF2038	0.40	-0.9
2,072,471	-		GFF2038	0.40	-0.4
2,072,478	-		GFF2038	0.41	-0.4
2,072,479	-		GFF2038	0.41	-0.9
2,072,497	-		GFF2038	0.43	+0.1
2,072,514	-		GFF2038	0.44	-0.4
2,072,605	-		GFF2038	0.51	-1.7
2,072,610	-		GFF2038	0.52	-0.7
2,072,617	-		GFF2038	0.52	-1.0
2,072,660	+		GFF2038	0.56	+2.0
2,072,665	+		GFF2038	0.56	-0.8
2,072,665	+		GFF2038	0.56	+1.1
2,072,668	-		GFF2038	0.57	-1.2
2,072,673	-		GFF2038	0.57	-0.6
2,072,673	-		GFF2038	0.57	-0.1
2,072,685	+		GFF2038	0.58	-0.9
2,072,703	+		GFF2038	0.60	-0.3
2,072,711	-		GFF2038	0.60	+0.6
2,072,724	+		GFF2038	0.61	-0.9
2,072,732	-		GFF2038	0.62	-0.5
2,072,732	-		GFF2038	0.62	-0.2
2,072,748	+		GFF2038	0.63	-0.8
2,072,756	-		GFF2038	0.64	+1.3
2,072,763	+		GFF2038	0.65	-1.5
2,072,765	+		GFF2038	0.65	+0.9
2,072,765	+		GFF2038	0.65	-0.2
2,072,765	+		GFF2038	0.65	+0.5
2,072,765	+		GFF2038	0.65	-1.3
2,072,765	+		GFF2038	0.65	-1.5
2,072,770	+		GFF2038	0.65	+1.8
2,072,771	-		GFF2038	0.65	-2.1
2,072,773	-		GFF2038	0.65	-0.5
2,072,773	-		GFF2038	0.65	-1.2
2,072,773	-		GFF2038	0.65	-0.7
2,072,775	+		GFF2038	0.66	+0.2
2,072,775	+		GFF2038	0.66	+0.8
2,072,775	+		GFF2038	0.66	-0.5
2,072,778	-		GFF2038	0.66	-1.0
2,072,783	+		GFF2038	0.66	-1.2
2,072,783	+		GFF2038	0.66	-0.3
2,072,783	-		GFF2038	0.66	-1.1
2,072,791	-		GFF2038	0.67	+0.4
2,072,811	-		GFF2038	0.69	-0.6
2,072,835	+		GFF2038	0.71	+0.9
2,072,843	-		GFF2038	0.71	-1.9
2,072,885	+		GFF2038	0.75	-1.0
2,072,885	+		GFF2038	0.75	+1.4
2,072,900	+		GFF2038	0.76	+0.3
2,072,900	+		GFF2038	0.76	-0.7
2,072,900	+		GFF2038	0.76	-0.1
2,072,900	+		GFF2038	0.76	-0.2
2,072,900	+		GFF2038	0.76	+1.0
2,072,900	+		GFF2038	0.76	-1.0
2,072,900	+		GFF2038	0.76	+0.4
2,072,900	+		GFF2038	0.76	-2.1
2,072,900	+		GFF2038	0.76	-0.2
2,072,900	+		GFF2038	0.76	-0.2
2,072,900	+		GFF2038	0.76	+0.1
2,072,908	-		GFF2038	0.77	-0.3
2,072,908	-		GFF2038	0.77	-2.2
2,072,908	-		GFF2038	0.77	-0.7
2,072,908	-		GFF2038	0.77	-1.4
2,072,908	-		GFF2038	0.77	-1.0
2,072,908	-		GFF2038	0.77	-0.2
2,072,908	-		GFF2038	0.77	-0.7
2,072,908	-		GFF2038	0.77	-1.7
2,072,908	-		GFF2038	0.77	-0.4
2,072,908	-		GFF2038	0.77	+0.2
2,072,908	-		GFF2038	0.77	+1.2
2,072,908	-		GFF2038	0.77	+0.1
2,072,908	-		GFF2038	0.77	-0.5
2,072,910	+		GFF2038	0.77	+0.6
2,072,923	+		GFF2038	0.78	-1.2
2,072,931	-		GFF2038	0.79	+0.4
2,072,936	-		GFF2038	0.79	+1.9
2,072,941	-		GFF2038	0.79	-1.2
2,072,941	-		GFF2038	0.79	+0.7
2,072,963	+		GFF2038	0.81	-2.4
2,072,963	+		GFF2038	0.81	+0.4
2,072,971	-		GFF2038	0.82	+1.4
2,072,971	-		GFF2038	0.82	-1.3
2,072,971	-		GFF2038	0.82	-0.8
2,072,981	+		GFF2038	0.83	-0.5
2,072,981	+		GFF2038	0.83	-1.5
2,072,981	+		GFF2038	0.83	-0.9
2,072,981	+		GFF2038	0.83	-1.1
2,073,007	+		GFF2038	0.85	-1.4
2,073,012	+		GFF2038	0.85	-1.4
2,073,012	+		GFF2038	0.85	-1.9
2,073,012	+		GFF2038	0.85	-0.7
2,073,020	-		GFF2038	0.86	-0.9
2,073,020	-		GFF2038	0.86	-0.2
2,073,020	-		GFF2038	0.86	-1.2
2,073,020	-		GFF2038	0.86	-0.6
2,073,059	-		GFF2038	0.89	+0.4
2,073,085	+				+0.7
2,073,087	+				-0.4
2,073,094	+				-0.6
2,073,094	+				-1.0
2,073,095	-				-1.0
2,073,100	+				-0.4
2,073,100	+				+0.9
2,073,102	-				+0.2
2,073,102	-				+1.1
2,073,115	-				-0.2
2,073,129	+				-0.9
2,073,134	+				+0.4
2,073,134	+				-0.1
2,073,134	+				-0.9
2,073,136	+				-0.5
2,073,136	+				-1.1
2,073,137	-				-0.3
2,073,138	-				+1.1
2,073,142	-				+0.2
2,073,142	-				-0.9
2,073,142	-				-1.0
2,073,167	+				-0.4
2,073,182	+				-0.2
2,073,189	+				-2.0
2,073,190	+				-0.6
2,073,205	+				-0.5
2,073,212	-				-0.6
2,073,212	-				-0.6
2,073,213	-				-1.4
2,073,214	+				-0.2
2,073,215	+				+0.6
2,073,222	-				+0.5
2,073,223	-				-0.1
2,073,223	-				-0.0
2,073,223	-				-0.4
2,073,223	-				-1.4
2,073,223	-				+0.8
2,073,244	-				-1.2
2,073,259	-				+0.0
2,073,290	+				-0.2
2,073,290	+				-0.8
2,073,294	+				-1.1
2,073,296	-				-2.0
2,073,296	-				+0.5
2,073,296	-				-1.6
2,073,298	-				-1.1
2,073,298	-				+0.2
2,073,301	+				-0.7
2,073,302	-				-0.4
2,073,302	-				+0.9
2,073,302	-				-1.1
2,073,310	-				-0.9
2,073,313	+				-1.7
2,073,323	+				+0.6
2,073,338	+				+0.6
2,073,338	+				-0.9
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