Strain Fitness in Sphingobium sp. HT1-2 around GFF1976

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,998,135	+				-1.3
1,998,176	+		GFF1975	0.14	-0.1
1,998,197	+		GFF1975	0.15	+0.3
1,998,220	+		GFF1975	0.18	-1.9
1,998,230	+		GFF1975	0.18	-0.3
1,998,233	-		GFF1975	0.19	+1.0
1,998,233	-		GFF1975	0.19	+1.0
1,998,233	-		GFF1975	0.19	-0.9
1,998,235	+		GFF1975	0.19	+0.4
1,998,290	-		GFF1975	0.24	-0.7
1,998,292	+		GFF1975	0.24	+1.3
1,998,319	-		GFF1975	0.27	-1.2
1,998,327	-		GFF1975	0.27	-0.7
1,998,348	-		GFF1975	0.29	-0.2
1,998,374	+		GFF1975	0.32	-1.2
1,998,374	+		GFF1975	0.32	+0.3
1,998,420	+		GFF1975	0.36	-1.0
1,998,467	+		GFF1975	0.40	-1.1
1,998,467	+		GFF1975	0.40	+0.3
1,998,475	-		GFF1975	0.41	-0.4
1,998,475	-		GFF1975	0.41	+0.3
1,998,490	+		GFF1975	0.42	+0.7
1,998,513	+		GFF1975	0.44	+1.1
1,998,513	+		GFF1975	0.44	-0.8
1,998,513	+		GFF1975	0.44	+0.6
1,998,513	-		GFF1975	0.44	-0.9
1,998,513	-		GFF1975	0.44	+1.1
1,998,513	-		GFF1975	0.44	-2.1
1,998,521	-		GFF1975	0.45	+0.7
1,998,521	-		GFF1975	0.45	-1.3
1,998,521	-		GFF1975	0.45	-1.7
1,998,521	-		GFF1975	0.45	-0.4
1,998,521	-		GFF1975	0.45	-0.3
1,998,531	-		GFF1975	0.46	+0.1
1,998,545	-		GFF1975	0.47	-0.6
1,998,557	+		GFF1975	0.48	-0.4
1,998,560	-		GFF1975	0.48	+0.6
1,998,588	-		GFF1975	0.51	-0.4
1,998,588	-		GFF1975	0.51	-0.9
1,998,588	-		GFF1975	0.51	+2.3
1,998,611	+		GFF1975	0.53	-1.6
1,998,611	+		GFF1975	0.53	-0.6
1,998,619	-		GFF1975	0.54	+0.1
1,998,619	-		GFF1975	0.54	+0.9
1,998,624	-		GFF1975	0.54	+0.4
1,998,628	+		GFF1975	0.55	-0.8
1,998,636	-		GFF1975	0.55	+0.4
1,998,647	-		GFF1975	0.56	-0.1
1,998,647	-		GFF1975	0.56	+0.9
1,998,681	+		GFF1975	0.59	+0.2
1,998,682	+		GFF1975	0.59	+0.8
1,998,687	+		GFF1975	0.60	+0.9
1,998,694	-		GFF1975	0.61	-0.6
1,998,695	-		GFF1975	0.61	+0.2
1,998,700	+		GFF1975	0.61	+0.8
1,998,706	+		GFF1975	0.62	-0.1
1,998,715	+		GFF1975	0.62	+0.5
1,998,737	+		GFF1975	0.64	-0.8
1,998,738	+		GFF1975	0.64	+0.2
1,998,740	-		GFF1975	0.65	-0.2
1,998,742	+		GFF1975	0.65	-0.1
1,998,745	-		GFF1975	0.65	+0.9
1,998,746	-		GFF1975	0.65	+0.7
1,998,749	+		GFF1975	0.65	-1.1
1,998,750	-		GFF1975	0.66	-1.2
1,998,761	+		GFF1975	0.67	-0.4
1,998,769	-		GFF1975	0.67	+1.0
1,998,769	-		GFF1975	0.67	-1.3
1,998,771	+		GFF1975	0.67	+0.6
1,998,774	-		GFF1975	0.68	+2.9
1,998,779	-		GFF1975	0.68	+0.2
1,998,823	+		GFF1975	0.72	-0.2
1,998,831	+		GFF1975	0.73	-1.2
1,998,841	-		GFF1975	0.74	-1.0
1,998,847	-		GFF1975	0.74	-0.9
1,998,928	-		GFF1975	0.82	-1.0
1,999,014	-		GFF1975	0.89	-0.2
1,999,015	+		GFF1975	0.90	-0.1
1,999,033	-				+0.3
1,999,048	-				-1.5
1,999,078	+				-1.6
1,999,136	+				-0.0
1,999,136	+				+0.9
1,999,144	-				-0.1
1,999,157	+				+0.8
1,999,178	-				+0.7
1,999,208	-				+0.2
1,999,241	+		GFF1976	0.12	-0.7
1,999,244	-		GFF1976	0.12	-0.8
1,999,259	-		GFF1976	0.14	+0.3
1,999,307	+		GFF1976	0.19	+0.9
1,999,307	+		GFF1976	0.19	+1.0
1,999,307	+		GFF1976	0.19	+1.5
1,999,307	+		GFF1976	0.19	+0.6
1,999,311	+		GFF1976	0.19	+1.3
1,999,315	-		GFF1976	0.20	-1.2
1,999,360	+		GFF1976	0.25	+1.6
1,999,375	-		GFF1976	0.26	+0.3
1,999,478	+		GFF1976	0.37	+0.4
1,999,517	+		GFF1976	0.41	+0.9
1,999,517	-		GFF1976	0.41	+0.3
1,999,523	-		GFF1976	0.42	+1.2
1,999,526	+		GFF1976	0.42	+1.1
1,999,526	+		GFF1976	0.42	-0.6
1,999,534	-		GFF1976	0.43	+0.3
1,999,534	-		GFF1976	0.43	-0.1
1,999,534	-		GFF1976	0.43	-0.6
1,999,561	+		GFF1976	0.46	-0.9
1,999,563	+		GFF1976	0.46	-0.0
1,999,569	-		GFF1976	0.46	+2.1
1,999,604	+		GFF1976	0.50	-0.7
1,999,612	-		GFF1976	0.51	+0.3
1,999,655	+		GFF1976	0.55	-1.3
1,999,683	+		GFF1976	0.58	+1.4
1,999,683	+		GFF1976	0.58	-0.2
1,999,691	-		GFF1976	0.59	+0.2
1,999,691	-		GFF1976	0.59	-0.2
1,999,691	-		GFF1976	0.59	+0.7
1,999,691	-		GFF1976	0.59	+1.5
1,999,694	+		GFF1976	0.60	+1.0
1,999,694	+		GFF1976	0.60	+0.8
1,999,700	-		GFF1976	0.60	-0.7
1,999,716	+		GFF1976	0.62	-0.5
1,999,716	+		GFF1976	0.62	-0.7
1,999,724	+		GFF1976	0.63	+0.6
1,999,724	-		GFF1976	0.63	+0.3
1,999,729	-		GFF1976	0.63	-0.6
1,999,734	-		GFF1976	0.64	+0.6
1,999,821	+		GFF1976	0.73	-1.1
1,999,837	-		GFF1976	0.75	+1.8
1,999,847	-		GFF1976	0.76	-1.2
1,999,856	-		GFF1976	0.77	-1.1
1,999,856	-		GFF1976	0.77	-0.6
1,999,856	-		GFF1976	0.77	-0.8
1,999,865	+		GFF1976	0.77	-1.7
1,999,866	-		GFF1976	0.78	-0.1
1,999,873	-		GFF1976	0.78	+0.4
1,999,873	-		GFF1976	0.78	-0.1
1,999,873	-		GFF1976	0.78	-0.8
1,999,873	-		GFF1976	0.78	+1.3
1,999,878	-		GFF1976	0.79	+0.2
1,999,878	-		GFF1976	0.79	+1.9
1,999,931	+		GFF1976	0.84	+1.3
1,999,969	-		GFF1976	0.88	+2.1
1,999,988	-				-0.0
1,999,992	+				+2.1
2,000,032	-				-2.2
2,000,043	+				-0.8
2,000,043	+				+0.5
2,000,043	+				+1.3
2,000,051	-				+0.1
2,000,089	-				+1.9
2,000,103	+				+1.2
2,000,117	+				+0.1
2,000,126	-				-0.6
2,000,130	+				-2.2
2,000,132	-				+1.0
2,000,160	+				+1.5
2,000,172	+				-1.1
2,000,190	-		GFF1977	0.13	+1.3
2,000,196	+		GFF1977	0.14	-0.4
2,000,204	-		GFF1977	0.16	+0.5
2,000,223	-		GFF1977	0.20	-0.8
2,000,223	-		GFF1977	0.20	+1.5
2,000,241	-		GFF1977	0.24	+0.3
2,000,258	+		GFF1977	0.27	-0.0
2,000,263	+		GFF1977	0.28	+0.3
2,000,271	-		GFF1977	0.30	-1.2
2,000,287	+		GFF1977	0.33	-0.9
2,000,292	+		GFF1977	0.34	-1.0
2,000,292	+		GFF1977	0.34	+0.1
2,000,296	+		GFF1977	0.35	-0.1
2,000,296	+		GFF1977	0.35	+0.4
2,000,303	+		GFF1977	0.37	-0.8
2,000,311	-		GFF1977	0.38	-1.9
2,000,322	+		GFF1977	0.41	-0.1
2,000,324	+		GFF1977	0.41	-0.7
2,000,331	+		GFF1977	0.43	+1.2
2,000,339	-		GFF1977	0.44	-1.1
2,000,345	+		GFF1977	0.46	+0.3
2,000,390	-		GFF1977	0.55	+1.0
2,000,429	+		GFF1977	0.63	-0.9
2,000,429	+		GFF1977	0.63	-0.5
2,000,432	-		GFF1977	0.64	-0.9
2,000,437	-		GFF1977	0.65	+1.2
2,000,437	-		GFF1977	0.65	-1.0
2,000,437	-		GFF1977	0.65	-1.2
2,000,448	-		GFF1977	0.67	+0.9
2,000,474	-		GFF1977	0.73	+0.2
2,000,513	-		GFF1977	0.81	-1.0
2,000,518	-		GFF1977	0.82	+0.9
2,000,531	-		GFF1977	0.85	-0.5
2,000,613	+				+0.7
2,000,613	+				+0.9
2,000,613	+				+0.2
2,000,613	+				+0.0
2,000,677	+				+1.3
2,000,685	-				+0.2
2,000,694	+				-1.1
2,000,706	+				+1.0
2,000,706	+				-0.6
2,000,706	+				+0.9
2,000,758	-		GFF1978	0.10	-1.3
2,000,758	-		GFF1978	0.10	+0.0
2,000,794	-		GFF1978	0.14	+1.7
2,000,817	-		GFF1978	0.16	-1.6
2,000,829	+		GFF1978	0.17	+0.7
2,000,834	+		GFF1978	0.18	+0.3
2,000,837	-		GFF1978	0.18	-1.6
2,000,837	-		GFF1978	0.18	-0.1
2,000,871	-		GFF1978	0.21	-2.0
2,000,876	+		GFF1978	0.22	-0.9
2,000,876	+		GFF1978	0.22	+0.5
2,000,889	-		GFF1978	0.23	+1.0
2,000,889	-		GFF1978	0.23	-0.2
2,000,906	+		GFF1978	0.25	-0.3
2,000,925	+		GFF1978	0.27	+0.3
2,000,933	-		GFF1978	0.28	-0.7
2,000,937	+		GFF1978	0.28	+0.3
2,000,974	+		GFF1978	0.32	+0.6
2,000,994	+		GFF1978	0.34	+2.3
2,001,023	+		GFF1978	0.36	+0.3
2,001,030	+		GFF1978	0.37	-0.3
2,001,058	+		GFF1978	0.40	-0.4