Strain Fitness in Sphingobium sp. HT1-2 around GFF1919

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,942,918	-				-0.7
1,942,918	-				+0.3
1,942,926	+				-1.4
1,942,926	+				+0.2
1,942,926	+				-1.6
1,942,926	+				+0.0
1,942,926	+				+0.3
1,942,931	+				-0.1
1,942,933	+				-1.8
1,942,933	+				-0.3
1,942,933	+				-1.3
1,942,933	+				-0.0
1,942,933	+				+1.8
1,942,933	+				-0.9
1,942,933	+				-0.4
1,942,934	-				-0.9
1,942,934	-				-1.0
1,942,934	-				-0.7
1,942,934	-				-0.5
1,942,934	-				-0.2
1,942,941	-				-0.9
1,942,941	-				-0.1
1,942,941	-				-1.2
1,942,951	-				-1.0
1,943,321	+		GFF1918	0.42	-0.9
1,943,623	-		GFF1918	0.76	+0.5
1,943,700	+		GFF1918	0.85	+0.5
1,943,813	+				-0.5
1,943,821	-				+0.4
1,943,853	-				-0.5
1,943,857	+				+1.8
1,943,865	-				+0.7
1,943,867	+				+0.8
1,943,870	+				-0.6
1,943,873	-				-0.7
1,943,875	-				-0.1
1,943,883	-				-0.8
1,943,914	+				-1.0
1,943,922	+				-0.2
1,943,922	-				-1.8
1,943,930	-				-1.5
1,943,958	-				-1.7
1,943,969	-				-0.2
1,943,982	+		GFF1919	0.11	-1.3
1,943,994	+		GFF1919	0.13	+1.0
1,944,002	-		GFF1919	0.14	-2.5
1,944,002	-		GFF1919	0.14	-1.5
1,944,007	+		GFF1919	0.15	-0.3
1,944,015	-		GFF1919	0.16	-1.6
1,944,015	-		GFF1919	0.16	-1.0
1,944,017	+		GFF1919	0.16	-0.6
1,944,025	-		GFF1919	0.18	-0.2
1,944,033	+		GFF1919	0.19	-1.2
1,944,041	-		GFF1919	0.20	+0.2
1,944,113	-		GFF1919	0.31	-1.1
1,944,124	-		GFF1919	0.33	-2.4
1,944,142	+		GFF1919	0.36	-0.7
1,944,163	+		GFF1919	0.39	-0.5
1,944,188	+		GFF1919	0.43	+0.5
1,944,188	+		GFF1919	0.43	-3.1
1,944,194	-		GFF1919	0.44	-0.6
1,944,196	-		GFF1919	0.44	-1.3
1,944,201	-		GFF1919	0.45	-1.7
1,944,211	+		GFF1919	0.46	-0.4
1,944,260	+		GFF1919	0.54	-0.4
1,944,267	+		GFF1919	0.55	-0.9
1,944,275	-		GFF1919	0.56	-0.8
1,944,277	+		GFF1919	0.57	-0.5
1,944,294	+		GFF1919	0.59	+1.5
1,944,294	-		GFF1919	0.59	-0.2
1,944,304	-		GFF1919	0.61	-0.5
1,944,369	-		GFF1919	0.71	-2.6
1,944,377	+		GFF1919	0.72	-1.2
1,944,390	-		GFF1919	0.74	-1.2
1,944,424	+		GFF1919	0.79	+0.3
1,944,424	+		GFF1919	0.79	+0.4
1,944,429	+		GFF1919	0.80	-1.3
1,944,446	+		GFF1919	0.83	-0.0
1,944,449	+		GFF1919	0.83	-0.8
1,944,451	+		GFF1919	0.84	-0.5
1,944,452	-		GFF1919	0.84	-0.6
1,944,459	-		GFF1919	0.85	-0.3
1,944,505	+				-0.3
1,944,505	+				-2.1
1,944,505	+				-0.7
1,944,513	-				+0.1
1,944,513	-				-1.6
1,944,513	-				+0.9
1,944,526	-				-0.3
1,944,536	-				-2.5
1,944,536	-				-0.3
1,944,543	-				-0.2
1,944,560	-				-1.0
1,944,601	-				-0.8
1,944,653	-				-0.7
1,944,656	+				-0.7
1,944,656	+				-1.1
1,944,658	-				-1.8
1,944,661	+				-0.5
1,944,661	+				-2.4
1,944,666	+				-0.2
1,944,666	+				-0.2
1,944,666	+				-1.0
1,944,666	+				-0.3
1,944,666	+				+0.4
1,944,666	+				+0.4
1,944,669	-				-0.1
1,944,669	-				-1.6
1,944,669	-				-1.5
1,944,671	+				-1.3
1,944,671	+				-1.5
1,944,671	+				-0.5
1,944,674	-				-2.0
1,944,674	-				+0.4
1,944,674	-				-0.9
1,944,674	-				-0.3
1,944,674	-				+0.1
1,944,674	-				-1.1
1,944,674	-				-1.8
1,944,679	-				-0.7
1,944,684	-				+0.6
1,944,706	-				-0.8
1,944,716	+				+0.7
1,944,716	+				-0.5
1,944,718	+				+0.8
1,944,724	-				-1.0
1,944,733	+				-0.6
1,944,735	+				-1.3
1,944,743	-				-1.2
1,944,744	-				+0.1
1,944,754	+				-1.5
1,944,754	+				-1.0
1,944,762	-				-1.8
1,944,762	-				-0.3
1,944,762	-				-0.1
1,944,762	-				-1.3
1,944,762	-				-0.2
1,944,762	-				-0.2
1,944,762	-				-1.3
1,944,767	+				-0.3
1,944,767	+				-0.4
1,944,767	+				-3.2
1,944,777	+				-2.6
1,944,785	-				-1.6
1,944,785	-				-1.0
1,944,787	+				-0.9
1,944,792	-		GFF1920	0.10	-1.4
1,944,795	-		GFF1920	0.10	+0.1
1,944,797	+		GFF1920	0.11	-0.2
1,944,834	+		GFF1920	0.13	-2.1
1,944,875	-		GFF1920	0.16	-1.3
1,944,890	-		GFF1920	0.17	-0.9
1,944,897	+		GFF1920	0.17	-2.3
1,944,937	+		GFF1920	0.20	-1.8
1,944,938	-		GFF1920	0.20	-1.8
1,944,954	+		GFF1920	0.21	-0.3
1,944,962	+		GFF1920	0.21	-1.9
1,944,962	-		GFF1920	0.21	-2.0
1,944,967	+		GFF1920	0.21	-0.2
1,944,979	-		GFF1920	0.22	-0.8
1,944,993	-		GFF1920	0.23	+0.4
1,944,994	+		GFF1920	0.23	-1.4
1,945,010	+		GFF1920	0.24	-0.5
1,945,010	+		GFF1920	0.24	-0.5
1,945,025	+		GFF1920	0.25	-0.5
1,945,033	-		GFF1920	0.26	-1.2
1,945,033	-		GFF1920	0.26	-0.6
1,945,038	+		GFF1920	0.26	-1.5
1,945,038	+		GFF1920	0.26	-1.6
1,945,046	-		GFF1920	0.26	+0.2
1,945,046	-		GFF1920	0.26	-0.3
1,945,054	-		GFF1920	0.27	-0.3
1,945,064	+		GFF1920	0.28	+0.0
1,945,091	+		GFF1920	0.29	-0.7
1,945,091	+		GFF1920	0.29	-1.6
1,945,091	+		GFF1920	0.29	-1.5
1,945,091	+		GFF1920	0.29	+0.4
1,945,091	+		GFF1920	0.29	-0.2
1,945,091	+		GFF1920	0.29	-0.5
1,945,091	+		GFF1920	0.29	-1.2
1,945,091	+		GFF1920	0.29	-1.0
1,945,091	+		GFF1920	0.29	-1.0
1,945,091	+		GFF1920	0.29	-1.1
1,945,091	+		GFF1920	0.29	-1.0
1,945,091	+		GFF1920	0.29	-1.9
1,945,093	+		GFF1920	0.29	-1.8
1,945,099	-		GFF1920	0.30	-1.8
1,945,099	-		GFF1920	0.30	-0.8
1,945,099	-		GFF1920	0.30	-1.9
1,945,099	-		GFF1920	0.30	-1.5
1,945,099	-		GFF1920	0.30	+0.2
1,945,099	-		GFF1920	0.30	-0.7
1,945,099	-		GFF1920	0.30	-1.5
1,945,099	-		GFF1920	0.30	-0.5
1,945,101	-		GFF1920	0.30	-1.8
1,945,101	-		GFF1920	0.30	-1.8
1,945,103	+		GFF1920	0.30	-1.3
1,945,122	+		GFF1920	0.31	-0.2
1,945,134	+		GFF1920	0.32	-2.4
1,945,155	+		GFF1920	0.33	-1.0
1,945,155	+		GFF1920	0.33	-2.0
1,945,155	+		GFF1920	0.33	-1.0
1,945,156	-		GFF1920	0.33	-1.2
1,945,163	-		GFF1920	0.34	-1.3
1,945,163	-		GFF1920	0.34	-2.3
1,945,163	-		GFF1920	0.34	+0.0
1,945,163	-		GFF1920	0.34	-0.7
1,945,163	-		GFF1920	0.34	-1.3
1,945,225	+		GFF1920	0.38	-1.4
1,945,225	+		GFF1920	0.38	-1.3
1,945,227	+		GFF1920	0.38	-1.5
1,945,235	-		GFF1920	0.38	+0.7
1,945,235	-		GFF1920	0.38	-0.5
1,945,242	+		GFF1920	0.39	-1.7
1,945,252	-		GFF1920	0.40	-0.2
1,945,312	+		GFF1920	0.43	-0.5
1,945,312	+		GFF1920	0.43	-0.8
1,945,312	+		GFF1920	0.43	-2.0
1,945,312	+		GFF1920	0.43	-2.3
1,945,312	+		GFF1920	0.43	-1.1
1,945,312	+		GFF1920	0.43	-0.5
1,945,312	+		GFF1920	0.43	-0.4
1,945,312	+		GFF1920	0.43	-0.8
1,945,319	-		GFF1920	0.44	-2.9
1,945,320	-		GFF1920	0.44	+0.2
1,945,320	-		GFF1920	0.44	-0.8
1,945,320	-		GFF1920	0.44	-0.3
1,945,320	-		GFF1920	0.44	-0.7
1,945,320	-		GFF1920	0.44	-0.3
1,945,320	-		GFF1920	0.44	-2.3
1,945,320	-		GFF1920	0.44	-0.2
1,945,320	-		GFF1920	0.44	+0.8
1,945,320	-		GFF1920	0.44	-0.2
1,945,320	-		GFF1920	0.44	-1.2
1,945,321	+		GFF1920	0.44	-1.5
1,945,322	+		GFF1920	0.44	-1.9
1,945,330	-		GFF1920	0.45	-0.8
1,945,334	-		GFF1920	0.45	-1.3
1,945,365	-		GFF1920	0.47	-0.9
1,945,378	+		GFF1920	0.48	-2.5
1,945,386	-		GFF1920	0.48	-0.2
1,945,386	-		GFF1920	0.48	-0.9
1,945,412	-		GFF1920	0.50	-1.6
1,945,418	-		GFF1920	0.50	-0.2
1,945,419	+		GFF1920	0.50	-2.5
1,945,427	-		GFF1920	0.51	-2.6
1,945,430	+		GFF1920	0.51	-1.2
1,945,433	-		GFF1920	0.51	-0.6
1,945,450	-		GFF1920	0.52	-0.9
1,945,453	+		GFF1920	0.52	+0.4
1,945,453	+		GFF1920	0.52	+0.2
1,945,463	+		GFF1920	0.53	+0.3
1,945,463	+		GFF1920	0.53	-1.7
1,945,463	+		GFF1920	0.53	-1.3
1,945,471	+		GFF1920	0.53	-1.5
1,945,471	+		GFF1920	0.53	-0.5
1,945,471	+		GFF1920	0.53	-0.3
1,945,471	+		GFF1920	0.53	+0.7
1,945,471	+		GFF1920	0.53	+0.4
1,945,471	+		GFF1920	0.53	-1.8
1,945,471	-		GFF1920	0.53	-0.7
1,945,471	-		GFF1920	0.53	-0.8
1,945,471	-		GFF1920	0.53	+0.6
1,945,478	+		GFF1920	0.54	-0.2
1,945,479	-		GFF1920	0.54	-2.8
1,945,479	-		GFF1920	0.54	-1.4
1,945,485	+		GFF1920	0.54	-2.3
1,945,491	-		GFF1920	0.55	-1.6
1,945,521	+		GFF1920	0.57	-2.3