Strain Fitness in Sphingobium sp. HT1-2 around GFF1875

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,902,383	+		GFF1874	0.27	+0.2
1,902,398	+		GFF1874	0.28	+1.1
1,902,399	+		GFF1874	0.28	-1.1
1,902,399	+		GFF1874	0.28	-1.7
1,902,407	-		GFF1874	0.29	-1.7
1,902,407	-		GFF1874	0.29	+0.5
1,902,412	-		GFF1874	0.29	+0.8
1,902,417	-		GFF1874	0.30	+0.1
1,902,418	-		GFF1874	0.30	-0.5
1,902,420	+		GFF1874	0.30	-0.0
1,902,422	-		GFF1874	0.30	+0.3
1,902,422	-		GFF1874	0.30	+1.8
1,902,436	+		GFF1874	0.32	-0.4
1,902,438	+		GFF1874	0.32	+1.1
1,902,438	+		GFF1874	0.32	-0.6
1,902,438	+		GFF1874	0.32	+0.4
1,902,444	-		GFF1874	0.32	-0.5
1,902,446	-		GFF1874	0.32	+0.8
1,902,446	-		GFF1874	0.32	+0.8
1,902,446	-		GFF1874	0.32	+0.7
1,902,446	-		GFF1874	0.32	+0.1
1,902,448	+		GFF1874	0.33	-0.2
1,902,448	+		GFF1874	0.33	-0.9
1,902,448	+		GFF1874	0.33	-2.6
1,902,448	+		GFF1874	0.33	+0.1
1,902,448	+		GFF1874	0.33	-0.5
1,902,456	-		GFF1874	0.33	+0.8
1,902,456	-		GFF1874	0.33	-1.1
1,902,456	-		GFF1874	0.33	+0.1
1,902,456	-		GFF1874	0.33	-0.9
1,902,456	-		GFF1874	0.33	-1.0
1,902,456	-		GFF1874	0.33	-0.1
1,902,479	+		GFF1874	0.35	-0.6
1,902,487	-		GFF1874	0.36	+0.8
1,902,487	-		GFF1874	0.36	-1.2
1,902,499	+		GFF1874	0.37	+0.2
1,902,514	-		GFF1874	0.38	-0.8
1,902,529	+		GFF1874	0.40	+1.0
1,902,538	+		GFF1874	0.40	+0.6
1,902,539	+		GFF1874	0.40	+0.2
1,902,551	-		GFF1874	0.42	+0.3
1,902,561	+		GFF1874	0.42	+0.1
1,902,569	-		GFF1874	0.43	-0.6
1,902,633	+		GFF1874	0.49	-0.1
1,902,633	+		GFF1874	0.49	-1.0
1,902,641	-		GFF1874	0.49	-1.6
1,902,643	+		GFF1874	0.50	+1.1
1,902,643	+		GFF1874	0.50	-0.5
1,902,685	+		GFF1874	0.53	-0.3
1,902,691	+		GFF1874	0.54	-1.8
1,902,691	-		GFF1874	0.54	-0.0
1,902,695	+		GFF1874	0.54	-0.2
1,902,701	-		GFF1874	0.55	+1.4
1,902,708	+		GFF1874	0.55	+1.1
1,902,710	+		GFF1874	0.55	-1.2
1,902,716	-		GFF1874	0.56	-2.6
1,902,722	+		GFF1874	0.56	-1.4
1,902,765	+		GFF1874	0.60	-0.5
1,902,765	+		GFF1874	0.60	+0.1
1,902,765	+		GFF1874	0.60	-0.5
1,902,770	+		GFF1874	0.61	+0.7
1,902,770	+		GFF1874	0.61	-1.4
1,902,770	+		GFF1874	0.61	+0.1
1,902,770	+		GFF1874	0.61	+0.1
1,902,770	+		GFF1874	0.61	+1.1
1,902,770	+		GFF1874	0.61	-1.5
1,902,773	-		GFF1874	0.61	-0.2
1,902,773	-		GFF1874	0.61	-0.0
1,902,773	-		GFF1874	0.61	-0.5
1,902,778	-		GFF1874	0.61	+0.6
1,902,778	-		GFF1874	0.61	-0.4
1,902,778	-		GFF1874	0.61	-2.2
1,902,778	-		GFF1874	0.61	-0.4
1,902,778	-		GFF1874	0.61	+1.0
1,902,778	-		GFF1874	0.61	+0.2
1,902,778	-		GFF1874	0.61	-1.0
1,902,812	+		GFF1874	0.64	+0.5
1,902,814	-		GFF1874	0.64	+0.4
1,902,814	-		GFF1874	0.64	-1.5
1,902,814	-		GFF1874	0.64	+0.1
1,902,817	-		GFF1874	0.65	-1.2
1,902,820	-		GFF1874	0.65	-0.0
1,902,828	+		GFF1874	0.66	+0.6
1,902,855	-		GFF1874	0.68	-0.3
1,902,862	-		GFF1874	0.69	-0.5
1,902,862	-		GFF1874	0.69	+0.0
1,902,873	+		GFF1874	0.70	-0.3
1,902,873	+		GFF1874	0.70	-1.3
1,902,886	-		GFF1874	0.71	-0.2
1,902,902	-		GFF1874	0.72	+1.0
1,902,913	+		GFF1874	0.73	-0.6
1,902,913	+		GFF1874	0.73	+0.2
1,902,913	+		GFF1874	0.73	+0.5
1,902,913	+		GFF1874	0.73	-0.9
1,902,913	+		GFF1874	0.73	-0.2
1,902,913	+		GFF1874	0.73	-0.2
1,902,913	+		GFF1874	0.73	-1.6
1,902,913	+		GFF1874	0.73	-0.2
1,902,913	+		GFF1874	0.73	-2.6
1,902,921	-		GFF1874	0.74	-1.5
1,902,921	-		GFF1874	0.74	-1.4
1,902,921	-		GFF1874	0.74	-0.7
1,902,921	-		GFF1874	0.74	-1.5
1,902,921	-		GFF1874	0.74	-0.5
1,902,921	-		GFF1874	0.74	-0.7
1,902,921	-		GFF1874	0.74	-0.2
1,902,921	-		GFF1874	0.74	+0.4
1,902,934	+		GFF1874	0.75	+0.4
1,902,934	-		GFF1874	0.75	+0.5
1,902,938	+		GFF1874	0.75	-0.3
1,902,942	-		GFF1874	0.76	-1.7
1,902,976	-		GFF1874	0.79	+0.3
1,902,984	+		GFF1874	0.79	-0.8
1,902,989	+		GFF1874	0.80	-0.5
1,902,989	+		GFF1874	0.80	+0.6
1,903,006	-		GFF1874	0.81	-0.6
1,903,021	-		GFF1874	0.82	-0.3
1,903,040	+		GFF1874	0.84	-1.3
1,903,068	+		GFF1874	0.87	-0.8
1,903,068	+		GFF1874	0.87	-0.5
1,903,074	+		GFF1874	0.87	-1.6
1,903,076	-		GFF1874	0.87	+0.4
1,903,076	-		GFF1874	0.87	+0.2
1,903,087	-		GFF1874	0.88	+0.2
1,903,125	+				-2.0
1,903,130	+				-0.1
1,903,130	+				-0.0
1,903,130	+				-1.3
1,903,130	+				-0.1
1,903,130	+				-0.4
1,903,130	+				-1.6
1,903,130	+				-0.3
1,903,135	+				-0.5
1,903,138	-				-1.0
1,903,138	-				-1.1
1,903,140	+				+0.2
1,903,144	+				-1.8
1,903,154	+				-0.8
1,903,154	+				-1.7
1,903,154	+				-0.7
1,903,154	+				-1.2
1,903,154	+				-0.6
1,903,154	+				-1.0
1,903,154	+				-1.9
1,903,154	+				-1.2
1,903,160	-				-0.6
1,903,162	-				+0.7
1,903,162	-				-0.3
1,903,162	-				-0.2
1,903,162	-				-1.1
1,903,162	-				-1.0
1,903,162	-				+1.8
1,903,162	-				-0.8
1,903,162	-				-0.6
1,903,167	+				-1.3
1,903,170	-				+0.2
1,903,175	-				+0.6
1,903,175	-				-0.7
1,903,175	-				-1.7
1,903,177	+				-0.8
1,903,182	+				+1.0
1,903,190	-				-0.5
1,903,190	-				+0.3
1,903,190	-				+0.1
1,903,262	-				+0.5
1,903,262	-				-1.8
1,903,271	-				+0.5
1,903,273	+				-0.3
1,903,279	-				-0.5
1,903,281	-				+1.1
1,903,312	+				+1.1
1,903,312	+				-1.1
1,903,331	+				-1.3
1,903,337	+				-0.2
1,903,337	+				-1.7
1,903,337	+				-0.0
1,903,337	+				-0.8
1,903,345	-				-0.9
1,903,345	-				+1.3
1,903,345	-				-1.9
1,903,345	-				-0.8
1,903,345	-				-0.3
1,903,345	-				+0.2
1,903,354	+				+0.0
1,903,354	+				+0.9
1,903,359	+				-1.0
1,903,362	+				-1.2
1,903,364	+				+0.4
1,903,370	-				+0.4
1,903,378	+				-0.6
1,903,386	-				-0.8
1,903,413	-				+0.4
1,903,454	+				-1.1
1,903,473	-		GFF1875	0.10	+0.7
1,903,473	-		GFF1875	0.10	-1.4
1,903,490	+		GFF1875	0.12	-0.5
1,903,520	+		GFF1875	0.15	+1.5
1,903,549	-		GFF1875	0.18	-0.3
1,903,562	+		GFF1875	0.20	-0.5
1,903,562	+		GFF1875	0.20	+0.1
1,903,564	+		GFF1875	0.20	-0.8
1,903,569	+		GFF1875	0.21	+1.4
1,903,569	+		GFF1875	0.21	-0.3
1,903,569	+		GFF1875	0.21	-1.8
1,903,569	+		GFF1875	0.21	-0.8
1,903,569	+		GFF1875	0.21	+0.4
1,903,569	+		GFF1875	0.21	+0.4
1,903,569	+		GFF1875	0.21	-1.4
1,903,569	+		GFF1875	0.21	+0.8
1,903,569	+		GFF1875	0.21	+1.1
1,903,575	-		GFF1875	0.21	-0.2
1,903,575	-		GFF1875	0.21	+1.0
1,903,577	-		GFF1875	0.22	-1.2
1,903,577	-		GFF1875	0.22	-2.1
1,903,577	-		GFF1875	0.22	-0.1
1,903,577	-		GFF1875	0.22	-0.2
1,903,577	-		GFF1875	0.22	+1.1
1,903,577	-		GFF1875	0.22	-1.6
1,903,577	-		GFF1875	0.22	+0.9
1,903,577	-		GFF1875	0.22	-1.1
1,903,577	-		GFF1875	0.22	+0.4
1,903,577	-		GFF1875	0.22	+0.4
1,903,579	+		GFF1875	0.22	+0.7
1,903,616	-		GFF1875	0.26	+0.6
1,903,649	+		GFF1875	0.29	-1.3
1,903,654	+		GFF1875	0.30	+1.3
1,903,657	-		GFF1875	0.30	+0.1
1,903,662	-		GFF1875	0.31	-0.7
1,903,667	+		GFF1875	0.31	-1.1
1,903,673	+		GFF1875	0.32	-0.6
1,903,678	+		GFF1875	0.33	-1.1
1,903,681	-		GFF1875	0.33	-2.0
1,903,704	+		GFF1875	0.36	-0.7
1,903,704	+		GFF1875	0.36	-1.3
1,903,704	+		GFF1875	0.36	-1.0
1,903,704	+		GFF1875	0.36	-2.2
1,903,709	+		GFF1875	0.36	+0.8
1,903,712	-		GFF1875	0.36	-0.5
1,903,714	+		GFF1875	0.37	-0.9
1,903,714	+		GFF1875	0.37	-1.4
1,903,717	-		GFF1875	0.37	+0.8
1,903,722	-		GFF1875	0.38	-0.3
1,903,722	-		GFF1875	0.38	-1.6
1,903,728	+		GFF1875	0.38	-0.3
1,903,734	-		GFF1875	0.39	-0.5
1,903,777	+		GFF1875	0.44	-1.2
1,903,785	-		GFF1875	0.44	-1.3
1,903,798	+		GFF1875	0.46	-0.7
1,903,814	+		GFF1875	0.48	-0.0
1,903,822	-		GFF1875	0.49	-0.8
1,903,854	+		GFF1875	0.52	+0.9
1,903,865	+		GFF1875	0.53	+1.0
1,903,872	-		GFF1875	0.54	-1.3
1,903,926	+		GFF1875	0.60	+1.3
1,903,926	+		GFF1875	0.60	+0.5
1,903,926	+		GFF1875	0.60	-1.2
1,903,934	-		GFF1875	0.61	-0.7
1,903,937	+		GFF1875	0.61	-0.8
1,903,937	+		GFF1875	0.61	-0.2
1,903,937	+		GFF1875	0.61	-0.6
1,903,937	+		GFF1875	0.61	-0.6
1,903,945	-		GFF1875	0.62	-0.9
1,903,945	-		GFF1875	0.62	+1.0
1,903,964	+		GFF1875	0.64	-0.9
1,903,964	+		GFF1875	0.64	-0.8
1,903,964	+		GFF1875	0.64	-1.4
1,903,972	-		GFF1875	0.65	+0.4
1,903,972	-		GFF1875	0.65	-0.5
1,903,972	-		GFF1875	0.65	+0.3
1,903,972	-		GFF1875	0.65	+0.4
1,903,974	+		GFF1875	0.65	-0.7
1,903,982	-		GFF1875	0.66	-1.1
1,903,982	-		GFF1875	0.66	+0.3
1,904,006	-		GFF1875	0.69	-1.3
1,904,011	-		GFF1875	0.69	+0.3
1,904,016	-		GFF1875	0.70	-0.6
1,904,039	+		GFF1875	0.73	-0.2
1,904,046	+		GFF1875	0.73	+0.6
1,904,047	-		GFF1875	0.73	-0.3
1,904,047	-		GFF1875	0.73	-1.2
1,904,054	-		GFF1875	0.74	-0.2
1,904,083	+		GFF1875	0.77	-1.4
1,904,083	+		GFF1875	0.77	-1.4
1,904,083	+		GFF1875	0.77	+2.1
1,904,083	+		GFF1875	0.77	-0.8
1,904,083	+		GFF1875	0.77	+1.4
1,904,083	+		GFF1875	0.77	-1.0
1,904,083	+		GFF1875	0.77	-1.3
1,904,086	-		GFF1875	0.78	-0.8
1,904,089	-		GFF1875	0.78	+0.2
1,904,091	-		GFF1875	0.78	-1.5
1,904,091	-		GFF1875	0.78	-0.3
1,904,091	-		GFF1875	0.78	-1.6
1,904,091	-		GFF1875	0.78	-0.9
1,904,091	-		GFF1875	0.78	+0.1
1,904,091	-		GFF1875	0.78	-0.3
1,904,091	-		GFF1875	0.78	+0.2
1,904,091	-		GFF1875	0.78	-1.8
1,904,091	-		GFF1875	0.78	-0.7
1,904,091	-		GFF1875	0.78	-0.0
1,904,091	-		GFF1875	0.78	-0.6
1,904,096	-		GFF1875	0.79	-0.8
1,904,112	+		GFF1875	0.81	-2.0
1,904,113	-		GFF1875	0.81	-1.2
1,904,120	+		GFF1875	0.81	-0.2
1,904,120	-		GFF1875	0.81	-2.1
1,904,120	-		GFF1875	0.81	-1.5
1,904,128	-		GFF1875	0.82	-1.5
1,904,140	+		GFF1875	0.84	+1.1
1,904,147	+		GFF1875	0.84	-0.9
1,904,148	+		GFF1875	0.85	-2.1
1,904,154	-		GFF1875	0.85	-0.8
1,904,156	-		GFF1875	0.85	-1.4
1,904,156	-		GFF1875	0.85	+0.2
1,904,169	+		GFF1875	0.87	-0.1
1,904,173	-		GFF1875	0.87	-1.3
1,904,177	+		GFF1875	0.88	-1.8
1,904,182	+		GFF1875	0.88	-0.2
1,904,190	-		GFF1875	0.89	-2.1
1,904,191	+		GFF1875	0.89	+1.6
1,904,210	-				+1.8
1,904,210	-				+1.2
1,904,235	-				-1.9
1,904,235	-				-1.8
1,904,235	-				+0.8
1,904,246	+				-1.1
1,904,246	+				-2.8
1,904,246	+				-1.1
1,904,246	+				-0.7
1,904,246	+				-2.1
1,904,254	-				+0.9
1,904,254	-				-2.1
1,904,254	-				+0.3
1,904,254	-				-1.3
1,904,254	-				+0.7
1,904,254	-				-0.8
1,904,259	-				-0.4
1,904,259	-				-1.1
1,904,291	+				-1.3