Strain Fitness in Sphingobium sp. HT1-2 around GFF1817

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,838,795	+				-0.6
1,838,816	-				-0.7
1,838,816	-				+1.0
1,838,833	-				-1.3
1,838,856	-				+0.6
1,838,866	+				-0.7
1,838,874	-				-1.3
1,838,874	-				-0.5
1,838,924	+		GFF1816	0.16	-0.3
1,838,925	+		GFF1816	0.16	+0.3
1,838,932	-		GFF1816	0.17	-0.8
1,838,952	-		GFF1816	0.19	+0.5
1,838,962	-		GFF1816	0.21	+0.1
1,838,975	+		GFF1816	0.23	-0.3
1,838,979	-		GFF1816	0.23	-1.0
1,838,983	-		GFF1816	0.24	-0.6
1,839,000	-		GFF1816	0.26	-1.3
1,839,000	-		GFF1816	0.26	-0.2
1,839,000	-		GFF1816	0.26	+0.5
1,839,014	-		GFF1816	0.28	+0.1
1,839,037	+		GFF1816	0.31	-1.2
1,839,070	-		GFF1816	0.36	-0.2
1,839,072	+		GFF1816	0.36	+1.4
1,839,077	+		GFF1816	0.37	-0.3
1,839,080	-		GFF1816	0.37	-0.8
1,839,080	-		GFF1816	0.37	-0.9
1,839,080	-		GFF1816	0.37	-0.5
1,839,080	-		GFF1816	0.37	-0.4
1,839,083	+		GFF1816	0.37	+0.1
1,839,083	+		GFF1816	0.37	-0.4
1,839,091	-		GFF1816	0.39	-1.4
1,839,091	-		GFF1816	0.39	-0.3
1,839,103	-		GFF1816	0.40	-0.0
1,839,106	+		GFF1816	0.41	+0.4
1,839,108	-		GFF1816	0.41	-0.6
1,839,121	+		GFF1816	0.43	-1.0
1,839,142	+		GFF1816	0.46	+0.8
1,839,150	-		GFF1816	0.47	-0.1
1,839,156	-		GFF1816	0.48	-0.8
1,839,179	+		GFF1816	0.51	-0.9
1,839,187	-		GFF1816	0.52	+0.1
1,839,200	-		GFF1816	0.54	-1.7
1,839,215	+		GFF1816	0.56	+0.2
1,839,216	+		GFF1816	0.56	+0.0
1,839,222	-		GFF1816	0.57	-1.1
1,839,224	-		GFF1816	0.57	-1.3
1,839,246	-		GFF1816	0.60	+0.7
1,839,271	+		GFF1816	0.63	+0.1
1,839,271	+		GFF1816	0.63	-0.2
1,839,332	+		GFF1816	0.72	-0.8
1,839,358	+		GFF1816	0.75	-0.2
1,839,460	+		GFF1816	0.89	-0.2
1,839,461	+		GFF1816	0.90	+0.4
1,839,479	+				+0.9
1,839,488	+				-0.5
1,839,489	+				-0.9
1,839,514	+				+0.1
1,839,516	+				-1.3
1,839,516	+				-0.5
1,839,524	-				-1.1
1,839,524	-				-1.2
1,839,534	-				-1.8
1,839,535	-				-1.0
1,839,583	-				-1.1
1,839,612	-				+1.0
1,839,628	+				+1.3
1,839,661	+				-0.9
1,839,685	-		GFF1817	0.11	+0.3
1,839,700	-		GFF1817	0.13	+0.3
1,839,700	-		GFF1817	0.13	+1.8
1,839,705	+		GFF1817	0.13	-0.8
1,839,734	+		GFF1817	0.15	-0.3
1,839,739	+		GFF1817	0.15	-1.3
1,839,739	+		GFF1817	0.15	-0.0
1,839,742	-		GFF1817	0.16	+0.7
1,839,747	-		GFF1817	0.16	-0.5
1,839,753	+		GFF1817	0.16	-0.3
1,839,761	-		GFF1817	0.17	-0.6
1,839,761	-		GFF1817	0.17	-0.8
1,839,761	-		GFF1817	0.17	+0.0
1,839,761	-		GFF1817	0.17	-0.3
1,839,775	+		GFF1817	0.18	-1.1
1,839,777	-		GFF1817	0.18	-0.5
1,839,779	+		GFF1817	0.18	+1.0
1,839,779	+		GFF1817	0.18	-0.2
1,839,787	-		GFF1817	0.19	-0.7
1,839,817	-		GFF1817	0.21	-1.8
1,839,821	+		GFF1817	0.22	+0.4
1,839,829	-		GFF1817	0.22	-1.1
1,839,836	+		GFF1817	0.23	-0.6
1,839,841	+		GFF1817	0.23	+0.1
1,839,841	+		GFF1817	0.23	+0.0
1,839,844	-		GFF1817	0.23	-0.5
1,839,844	-		GFF1817	0.23	-0.8
1,839,844	-		GFF1817	0.23	+1.2
1,839,848	+		GFF1817	0.24	-2.4
1,839,849	-		GFF1817	0.24	-1.9
1,839,871	-		GFF1817	0.25	+0.3
1,839,887	-		GFF1817	0.27	-1.6
1,839,889	+		GFF1817	0.27	-1.5
1,839,889	+		GFF1817	0.27	+0.8
1,839,893	-		GFF1817	0.27	+0.8
1,839,924	+		GFF1817	0.29	-0.3
1,839,937	+		GFF1817	0.30	-2.0
1,839,956	+		GFF1817	0.32	-0.5
1,839,959	-		GFF1817	0.32	-1.1
1,839,971	-		GFF1817	0.33	+1.2
1,839,981	-		GFF1817	0.34	-0.3
1,839,989	+		GFF1817	0.34	-0.1
1,840,047	-		GFF1817	0.39	-1.2
1,840,057	-		GFF1817	0.39	-1.3
1,840,068	+		GFF1817	0.40	+0.5
1,840,080	+		GFF1817	0.41	+1.4
1,840,095	+		GFF1817	0.42	+1.0
1,840,098	-		GFF1817	0.42	-0.8
1,840,115	-		GFF1817	0.44	-1.6
1,840,115	-		GFF1817	0.44	-0.8
1,840,121	-		GFF1817	0.44	+0.7
1,840,128	+		GFF1817	0.45	-0.5
1,840,133	+		GFF1817	0.45	-1.6
1,840,136	-		GFF1817	0.45	-0.0
1,840,141	-		GFF1817	0.46	-0.4
1,840,143	+		GFF1817	0.46	-0.9
1,840,172	+		GFF1817	0.48	-0.3
1,840,182	+		GFF1817	0.49	-1.1
1,840,182	+		GFF1817	0.49	-2.2
1,840,182	+		GFF1817	0.49	-1.1
1,840,190	-		GFF1817	0.49	-0.6
1,840,190	-		GFF1817	0.49	+0.7
1,840,190	-		GFF1817	0.49	-0.9
1,840,195	-		GFF1817	0.50	-0.3
1,840,219	+		GFF1817	0.51	-0.0
1,840,224	-		GFF1817	0.52	-2.1
1,840,227	-		GFF1817	0.52	-0.9
1,840,237	+		GFF1817	0.53	+1.6
1,840,242	+		GFF1817	0.53	-1.0
1,840,242	+		GFF1817	0.53	-0.2
1,840,247	+		GFF1817	0.53	-0.0
1,840,247	+		GFF1817	0.53	-1.1
1,840,255	-		GFF1817	0.54	-1.4
1,840,255	-		GFF1817	0.54	-1.7
1,840,262	-		GFF1817	0.55	-0.1
1,840,278	+		GFF1817	0.56	-1.2
1,840,287	+		GFF1817	0.56	-1.7
1,840,295	-		GFF1817	0.57	+0.1
1,840,297	+		GFF1817	0.57	+1.1
1,840,297	+		GFF1817	0.57	-0.9
1,840,297	+		GFF1817	0.57	-1.5
1,840,305	-		GFF1817	0.58	+1.1
1,840,305	-		GFF1817	0.58	-1.0
1,840,305	-		GFF1817	0.58	+0.2
1,840,305	-		GFF1817	0.58	-1.3
1,840,323	+		GFF1817	0.59	-0.3
1,840,323	+		GFF1817	0.59	-0.3
1,840,328	+		GFF1817	0.60	-1.1
1,840,328	+		GFF1817	0.60	-1.2
1,840,328	+		GFF1817	0.60	+0.2
1,840,329	-		GFF1817	0.60	-1.1
1,840,331	-		GFF1817	0.60	+0.3
1,840,331	-		GFF1817	0.60	-0.6
1,840,331	-		GFF1817	0.60	-0.8
1,840,331	-		GFF1817	0.60	-0.9
1,840,336	-		GFF1817	0.60	+0.9
1,840,336	-		GFF1817	0.60	-0.8
1,840,336	-		GFF1817	0.60	+1.2
1,840,336	-		GFF1817	0.60	-0.2
1,840,392	-		GFF1817	0.64	-1.1
1,840,400	-		GFF1817	0.65	+0.2
1,840,409	+		GFF1817	0.66	-0.2
1,840,409	-		GFF1817	0.66	-1.7
1,840,447	-		GFF1817	0.68	-0.5
1,840,457	-		GFF1817	0.69	+0.5
1,840,466	+		GFF1817	0.70	-0.5
1,840,466	+		GFF1817	0.70	-1.1
1,840,544	+		GFF1817	0.76	-0.5
1,840,563	+		GFF1817	0.77	-0.3
1,840,566	-		GFF1817	0.77	-0.7
1,840,578	+		GFF1817	0.78	-1.0
1,840,578	+		GFF1817	0.78	+1.4
1,840,586	-		GFF1817	0.79	+0.1
1,840,615	+		GFF1817	0.81	-0.9
1,840,691	+		GFF1817	0.87	-0.6
1,840,696	+		GFF1817	0.87	-0.1
1,840,696	+		GFF1817	0.87	-0.6
1,840,697	+		GFF1817	0.87	+0.1
1,840,713	+		GFF1817	0.88	-0.1
1,840,713	+		GFF1817	0.88	-1.7
1,840,714	-		GFF1817	0.88	+0.4
1,840,714	-		GFF1817	0.88	-1.5
1,840,714	-		GFF1817	0.88	-1.1
1,840,721	-		GFF1817	0.89	-1.3
1,840,721	-		GFF1817	0.89	-0.9
1,840,726	-		GFF1817	0.89	+0.9
1,840,726	-		GFF1817	0.89	-0.1
1,840,732	+		GFF1817	0.90	-2.0
1,840,732	+		GFF1817	0.90	+0.5
1,840,732	+		GFF1817	0.90	+0.1
1,840,740	-				+0.8
1,840,740	-				-2.0
1,840,740	-				-1.7
1,840,740	-				-0.3
1,840,779	-				-0.8
1,840,838	-				+1.0
1,840,839	+				-0.1
1,840,856	+				+0.1
1,840,856	+				-0.9
1,840,856	+				-2.1
1,840,864	-				-0.8
1,840,874	+				-0.2
1,840,893	+				-0.3
1,840,893	+				+0.9
1,840,901	-				-1.0
1,840,912	+		GFF1818	0.10	-0.3
1,840,932	-		GFF1818	0.14	-1.1
1,840,939	+		GFF1818	0.15	-0.7
1,840,939	+		GFF1818	0.15	+0.8
1,840,939	+		GFF1818	0.15	-0.9
1,840,939	+		GFF1818	0.15	+0.8
1,840,939	+		GFF1818	0.15	-0.9
1,840,939	+		GFF1818	0.15	+0.2
1,840,947	+		GFF1818	0.17	+0.7
1,840,947	+		GFF1818	0.17	-0.8
1,840,947	+		GFF1818	0.17	-0.7
1,840,947	+		GFF1818	0.17	-1.6
1,840,947	-		GFF1818	0.17	-0.1
1,840,947	-		GFF1818	0.17	-1.2
1,840,947	-		GFF1818	0.17	-0.9
1,840,947	-		GFF1818	0.17	-0.2
1,840,947	-		GFF1818	0.17	-0.2
1,840,947	-		GFF1818	0.17	-1.8
1,840,947	-		GFF1818	0.17	-1.6
1,840,947	-		GFF1818	0.17	-0.1
1,840,955	-		GFF1818	0.18	-0.3
1,840,955	-		GFF1818	0.18	-0.4
1,840,957	+		GFF1818	0.19	+0.4
1,840,963	+		GFF1818	0.20	+0.2
1,840,985	+		GFF1818	0.24	-0.8
1,840,993	-		GFF1818	0.25	-0.7
1,840,993	-		GFF1818	0.25	-0.5
1,840,993	-		GFF1818	0.25	+0.1
1,841,039	+		GFF1818	0.34	+1.4
1,841,040	-		GFF1818	0.34	+0.6
1,841,048	+		GFF1818	0.36	-0.9
1,841,056	-		GFF1818	0.37	-0.3
1,841,064	+		GFF1818	0.39	+0.2
1,841,072	-		GFF1818	0.40	-0.3
1,841,105	-		GFF1818	0.46	-2.3
1,841,110	-		GFF1818	0.47	-0.9
1,841,115	-		GFF1818	0.48	+0.8
1,841,132	-		GFF1818	0.51	-0.7
1,841,139	+		GFF1818	0.53	-0.2
1,841,174	+		GFF1818	0.59	-1.3
1,841,174	+		GFF1818	0.59	-1.3
1,841,174	+		GFF1818	0.59	-1.7
1,841,180	-		GFF1818	0.60	-1.2
1,841,180	-		GFF1818	0.60	-0.3
1,841,182	-		GFF1818	0.61	-0.8
1,841,189	+		GFF1818	0.62	-0.0
1,841,253	+		GFF1818	0.74	-0.8
1,841,263	-		GFF1818	0.76	-1.1
1,841,277	-		GFF1818	0.79	-1.6
1,841,289	+		GFF1818	0.81	-0.4
1,841,289	+		GFF1818	0.81	-0.3
1,841,297	-		GFF1818	0.82	-0.5
1,841,315	+		GFF1818	0.86	-0.0
1,841,315	+		GFF1818	0.86	+0.2
1,841,315	+		GFF1818	0.86	+0.7
1,841,323	-		GFF1818	0.87	-1.6
1,841,323	-		GFF1818	0.87	-1.7
1,841,340	-				-1.0
1,841,369	+				+2.1
1,841,404	+				-1.1
1,841,413	-				-1.1
1,841,425	+				-2.6
1,841,425	+				-1.7
1,841,433	-				-0.6
1,841,433	-				+1.3
1,841,437	+				-0.6
1,841,445	-				-1.0
1,841,447	+				-1.6
1,841,447	+				+0.9
1,841,447	+				-2.0
1,841,450	-				+2.7
1,841,455	-				+0.8
1,841,455	-				-1.0
1,841,455	-				-0.3
1,841,458	+				-1.3
1,841,466	-		GFF1819	0.15	-0.6
1,841,511	-		GFF1819	0.76	-1.5
1,841,521	-				+0.7
1,841,562	+				+0.6
1,841,562	+				-1.0
1,841,574	+				-1.2
1,841,609	+				-1.6
1,841,609	+				-0.6
1,841,609	+				+0.0
1,841,616	+				-1.1
1,841,621	+				+0.3
1,841,621	+				-1.5
1,841,626	+				-1.5
1,841,631	+				-0.1
1,841,631	+				-0.2
1,841,631	+				+0.5
1,841,631	+				+0.8
1,841,631	+				-1.4
1,841,631	+				+0.4
1,841,631	+				-0.7
1,841,631	+				-1.3
1,841,631	+				+0.8
1,841,631	+				-1.3
1,841,636	+				+0.4
1,841,639	-				-0.1
1,841,639	-				+0.9
1,841,639	-				-0.8
1,841,639	-				-1.0
1,841,639	-				-0.7
1,841,639	-				+0.8
1,841,639	-				+0.2
1,841,639	-				-0.7
1,841,639	-				-0.2
1,841,644	-				+1.1
1,841,671	+				-1.3
1,841,681	+		GFF1820	0.10	+2.2
1,841,694	-		GFF1820	0.12	-1.3
1,841,701	-		GFF1820	0.13	+0.3
1,841,712	+		GFF1820	0.14	+0.2
1,841,746	+		GFF1820	0.19	-1.0
1,841,795	-		GFF1820	0.25	-0.7
1,841,803	-		GFF1820	0.26	-0.5
1,841,810	+		GFF1820	0.27	-1.5
1,841,822	+		GFF1820	0.28	-0.5
1,841,822	+		GFF1820	0.28	-1.9
1,841,841	-		GFF1820	0.31	+0.2
1,841,842	-		GFF1820	0.31	-0.2