Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF178 and GFF179 overlap by 23 nucleotides GFF179 and GFF180 overlap by 11 nucleotides
GFF178 - Periplasmic chaperone and peptidyl-prolyl cis-trans isomerase of outer membrane proteins SurA (EC 5.2.1.8), at 181,236 to 182,600
GFF178
GFF179 - 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262), at 182,578 to 183,603
GFF179
GFF180 - SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182), at 183,593 to 184,447
GFF180
Position (kb) 182
183
184 Strain fitness (log2 ratio) -2
-1
0
1
2 at 183.591 kb on - strand at 183.591 kb on - strand at 183.599 kb on + strand at 183.613 kb on + strand at 183.615 kb on + strand at 183.638 kb on + strand at 183.651 kb on + strand at 183.658 kb on + strand at 183.661 kb on - strand at 183.739 kb on + strand, within GFF180 at 183.776 kb on + strand, within GFF180 at 183.776 kb on + strand, within GFF180 at 183.776 kb on + strand, within GFF180 at 183.784 kb on - strand, within GFF180 at 183.784 kb on - strand, within GFF180 at 183.825 kb on + strand, within GFF180 at 183.835 kb on + strand, within GFF180 at 183.858 kb on + strand, within GFF180 at 183.871 kb on - strand, within GFF180 at 183.876 kb on - strand, within GFF180 at 183.878 kb on + strand, within GFF180 at 183.921 kb on + strand, within GFF180 at 183.921 kb on - strand, within GFF180 at 183.959 kb on + strand, within GFF180 at 183.964 kb on + strand, within GFF180 at 183.964 kb on + strand, within GFF180 at 183.967 kb on + strand, within GFF180 at 183.978 kb on + strand, within GFF180 at 183.978 kb on + strand, within GFF180 at 184.019 kb on + strand, within GFF180 at 184.024 kb on + strand, within GFF180 at 184.032 kb on + strand, within GFF180 at 184.032 kb on - strand, within GFF180 at 184.046 kb on - strand, within GFF180 at 184.080 kb on + strand, within GFF180 at 184.087 kb on + strand, within GFF180 at 184.087 kb on + strand, within GFF180 at 184.132 kb on + strand, within GFF180 at 184.152 kb on + strand, within GFF180 at 184.173 kb on - strand, within GFF180 at 184.186 kb on + strand, within GFF180 at 184.213 kb on + strand, within GFF180 at 184.216 kb on - strand, within GFF180 at 184.218 kb on + strand, within GFF180 at 184.231 kb on + strand, within GFF180 at 184.246 kb on + strand, within GFF180 at 184.246 kb on + strand, within GFF180 at 184.246 kb on + strand, within GFF180 at 184.246 kb on + strand, within GFF180 at 184.246 kb on + strand, within GFF180 at 184.247 kb on - strand, within GFF180 at 184.254 kb on - strand, within GFF180 at 184.254 kb on - strand, within GFF180 at 184.254 kb on - strand, within GFF180 at 184.261 kb on + strand, within GFF180 at 184.262 kb on + strand, within GFF180 at 184.278 kb on + strand, within GFF180 at 184.285 kb on - strand, within GFF180 at 184.286 kb on - strand, within GFF180 at 184.331 kb on - strand, within GFF180 at 184.341 kb on + strand, within GFF180 at 184.341 kb on + strand, within GFF180 at 184.343 kb on + strand, within GFF180 at 184.359 kb on - strand, within GFF180 at 184.364 kb on - strand at 184.437 kb on - strand at 184.440 kb on + strand at 184.463 kb on + strand at 184.471 kb on - strand at 184.472 kb on + strand at 184.501 kb on + strand at 184.508 kb on - strand at 184.509 kb on - strand at 184.514 kb on - strand at 184.519 kb on + strand at 184.519 kb on + strand at 184.519 kb on + strand at 184.526 kb on + strand at 184.534 kb on + strand at 184.534 kb on - strand at 184.539 kb on + strand at 184.550 kb on + strand at 184.558 kb on - strand at 184.568 kb on - strand at 184.589 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 183,591 - +1.3 183,591 - -2.6 183,599 + -0.0 183,613 + +0.8 183,615 + -0.6 183,638 + -0.6 183,651 + -0.6 183,658 + +0.1 183,661 - +0.5 183,739 + GFF180 0.17 -0.3 183,776 + GFF180 0.21 -1.5 183,776 + GFF180 0.21 -0.6 183,776 + GFF180 0.21 -1.1 183,784 - GFF180 0.22 -0.2 183,784 - GFF180 0.22 -1.5 183,825 + GFF180 0.27 +0.2 183,835 + GFF180 0.28 +1.2 183,858 + GFF180 0.31 -0.7 183,871 - GFF180 0.33 -0.5 183,876 - GFF180 0.33 -1.0 183,878 + GFF180 0.33 -1.1 183,921 + GFF180 0.38 -0.2 183,921 - GFF180 0.38 -1.0 183,959 + GFF180 0.43 +0.7 183,964 + GFF180 0.43 +0.7 183,964 + GFF180 0.43 +1.4 183,967 + GFF180 0.44 +0.7 183,978 + GFF180 0.45 +2.0 183,978 + GFF180 0.45 +0.7 184,019 + GFF180 0.50 +0.4 184,024 + GFF180 0.50 +0.8 184,032 + GFF180 0.51 -0.3 184,032 - GFF180 0.51 -2.1 184,046 - GFF180 0.53 -0.2 184,080 + GFF180 0.57 +1.4 184,087 + GFF180 0.58 +0.1 184,087 + GFF180 0.58 -0.5 184,132 + GFF180 0.63 -0.2 184,152 + GFF180 0.65 -0.6 184,173 - GFF180 0.68 -0.7 184,186 + GFF180 0.69 -1.2 184,213 + GFF180 0.73 -0.9 184,216 - GFF180 0.73 -0.3 184,218 + GFF180 0.73 -0.6 184,231 + GFF180 0.75 +0.4 184,246 + GFF180 0.76 -0.2 184,246 + GFF180 0.76 -0.0 184,246 + GFF180 0.76 -0.9 184,246 + GFF180 0.76 -0.6 184,246 + GFF180 0.76 -1.0 184,247 - GFF180 0.76 -0.5 184,254 - GFF180 0.77 -1.9 184,254 - GFF180 0.77 -0.6 184,254 - GFF180 0.77 +1.0 184,261 + GFF180 0.78 -0.5 184,262 + GFF180 0.78 -0.9 184,278 + GFF180 0.80 -0.2 184,285 - GFF180 0.81 -0.3 184,286 - GFF180 0.81 -1.1 184,331 - GFF180 0.86 -0.2 184,341 + GFF180 0.87 +0.9 184,341 + GFF180 0.87 +0.3 184,343 + GFF180 0.88 -1.2 184,359 - GFF180 0.90 -0.5 184,364 - +0.4 184,437 - +0.5 184,440 + -0.3 184,463 + -1.0 184,471 - -0.7 184,472 + +1.3 184,501 + -0.9 184,508 - +2.1 184,509 - +0.6 184,514 - +1.4 184,519 + -0.8 184,519 + +0.2 184,519 + +0.1 184,526 + +1.0 184,534 + -1.4 184,534 - -0.6 184,539 + +1.7 184,550 + +0.3 184,558 - -0.9 184,568 - -0.3 184,589 - -1.3
Or see this region's nucleotide sequence