Strain Fitness in Sphingobium sp. HT1-2 around GFF1768

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,796,593	+		GFF1766	0.73	-1.5
1,796,598	+		GFF1766	0.73	-1.1
1,796,622	-		GFF1766	0.74	-0.1
1,796,629	-		GFF1766	0.74	-1.7
1,796,630	+		GFF1766	0.74	-0.6
1,796,655	-		GFF1766	0.76	-1.0
1,796,656	+		GFF1766	0.76	-0.8
1,796,662	-		GFF1766	0.76	+0.8
1,796,674	+		GFF1766	0.76	-0.9
1,796,674	-		GFF1766	0.76	-0.8
1,796,674	-		GFF1766	0.76	-0.8
1,796,677	+		GFF1766	0.77	+0.1
1,796,709	+		GFF1766	0.78	+1.5
1,796,715	+		GFF1766	0.78	-1.5
1,796,723	-		GFF1766	0.79	-0.8
1,796,752	-		GFF1766	0.80	-1.6
1,796,786	-		GFF1766	0.82	+0.2
1,796,808	+		GFF1766	0.83	+0.1
1,796,813	+		GFF1766	0.83	+0.2
1,796,832	+		GFF1766	0.84	-1.8
1,796,832	+		GFF1766	0.84	+0.5
1,796,832	+		GFF1766	0.84	+0.8
1,796,832	+		GFF1766	0.84	+0.0
1,796,832	+		GFF1766	0.84	-1.1
1,796,832	+		GFF1766	0.84	-1.3
1,796,832	+		GFF1766	0.84	-1.1
1,796,832	+		GFF1766	0.84	+1.9
1,796,832	+		GFF1766	0.84	+1.1
1,796,832	+		GFF1766	0.84	-0.6
1,796,832	+		GFF1766	0.84	-0.3
1,796,832	+		GFF1766	0.84	-1.5
1,796,832	+		GFF1766	0.84	+0.3
1,796,839	-		GFF1766	0.84	+0.5
1,796,840	-		GFF1766	0.84	-0.4
1,796,840	-		GFF1766	0.84	-0.1
1,796,840	-		GFF1766	0.84	+0.1
1,796,840	-		GFF1766	0.84	-0.8
1,796,840	-		GFF1766	0.84	+1.4
1,796,840	-		GFF1766	0.84	-0.8
1,796,840	-		GFF1766	0.84	-0.2
1,796,840	-		GFF1766	0.84	+0.5
1,796,840	-		GFF1766	0.84	-1.0
1,796,840	-		GFF1766	0.84	-1.8
1,796,840	-		GFF1766	0.84	+0.3
1,796,840	-		GFF1766	0.84	+0.1
1,796,840	-		GFF1766	0.84	-0.6
1,796,840	-		GFF1766	0.84	-0.5
1,796,876	-		GFF1766	0.86	+0.7
1,796,897	+		GFF1766	0.87	-0.7
1,796,897	+		GFF1766	0.87	-1.7
1,796,897	+		GFF1766	0.87	-0.2
1,796,905	-		GFF1766	0.87	-0.5
1,796,905	-		GFF1766	0.87	+0.9
1,796,905	-		GFF1766	0.87	-1.6
1,796,905	-		GFF1766	0.87	-0.2
1,796,905	-		GFF1766	0.87	-0.9
1,796,905	-		GFF1766	0.87	-0.9
1,796,905	-		GFF1766	0.87	+0.6
1,796,910	+		GFF1766	0.87	+0.0
1,796,910	+		GFF1766	0.87	+0.9
1,796,915	+		GFF1766	0.87	-2.5
1,796,915	+		GFF1766	0.87	-1.1
1,796,915	+		GFF1766	0.87	+0.6
1,796,915	+		GFF1766	0.87	+1.1
1,796,915	+		GFF1766	0.87	-1.4
1,796,915	+		GFF1766	0.87	-1.2
1,796,918	-		GFF1766	0.88	-0.3
1,796,920	+		GFF1766	0.88	-1.1
1,796,923	-		GFF1766	0.88	+0.2
1,796,923	-		GFF1766	0.88	-0.8
1,796,923	-		GFF1766	0.88	-0.0
1,796,923	-		GFF1766	0.88	+0.0
1,796,923	-		GFF1766	0.88	-0.9
1,796,923	-		GFF1766	0.88	-1.1
1,796,931	-		GFF1766	0.88	-0.3
1,796,948	+		GFF1766	0.89	+1.0
1,796,967	-		GFF1766	0.90	-0.2
1,797,019	-				+0.5
1,797,024	+				-1.0
1,797,028	+				+0.3
1,797,036	-				-0.3
1,797,058	+				-0.7
1,797,059	-				-1.0
1,797,059	-				+1.7
1,797,066	+				+0.2
1,797,066	+				-1.9
1,797,066	+				+0.2
1,797,066	-				+0.1
1,797,074	-				-2.0
1,797,076	+				+0.2
1,797,076	-				-1.5
1,797,081	+				-0.6
1,797,081	+				-1.8
1,797,081	+				-1.5
1,797,081	+				-0.6
1,797,081	+				+0.1
1,797,081	+				-0.6
1,797,081	+				-1.6
1,797,086	+				-0.5
1,797,089	-				-0.1
1,797,089	-				-0.0
1,797,089	-				-1.4
1,797,089	-				-0.9
1,797,089	-				-0.8
1,797,089	-				-0.2
1,797,089	-				+0.9
1,797,089	-				-1.0
1,797,094	-				-0.0
1,797,094	-				-0.7
1,797,094	-				-1.8
1,797,094	-				-0.5
1,797,099	-				-0.7
1,797,101	+				-1.3
1,797,101	+				-0.9
1,797,101	+				-1.1
1,797,101	+				-0.5
1,797,101	+				-1.8
1,797,101	+				+0.3
1,797,101	+				-1.2
1,797,102	-				-1.3
1,797,109	-				-0.3
1,797,109	-				+0.9
1,797,109	-				+0.5
1,797,109	-				-2.0
1,797,109	-				-0.6
1,797,109	-				-0.8
1,797,109	-				-2.4
1,797,149	+				-1.6
1,797,149	+				-1.5
1,797,149	+				-1.3
1,797,149	+				-1.1
1,797,149	+				-0.1
1,797,157	-				-1.5
1,797,157	-				+0.8
1,797,157	-				-0.6
1,797,157	-				-1.9
1,797,157	-				-0.7
1,797,162	-				-2.0
1,797,171	+				+0.9
1,797,173	-				-0.6
1,797,180	+				+1.0
1,797,187	+				+0.1
1,797,187	+				-1.0
1,797,202	-				-1.0
1,797,221	-				-0.1
1,797,226	+				+0.7
1,797,226	+				+1.2
1,797,231	+				-0.5
1,797,231	+				-1.5
1,797,231	+				-1.7
1,797,231	+				+0.2
1,797,231	+				-0.9
1,797,234	-				-0.6
1,797,234	-				-1.4
1,797,236	+				-2.5
1,797,239	-				-0.7
1,797,256	+		GFF1767	0.13	+0.0
1,797,264	-		GFF1767	0.15	+0.3
1,797,272	+		GFF1767	0.17	-0.7
1,797,280	+		GFF1767	0.19	-0.6
1,797,281	+		GFF1767	0.19	+1.5
1,797,283	-		GFF1767	0.20	-0.5
1,797,286	+		GFF1767	0.21	-0.7
1,797,289	-		GFF1767	0.21	-0.8
1,797,291	+		GFF1767	0.22	-0.3
1,797,294	-		GFF1767	0.23	-0.1
1,797,308	+		GFF1767	0.26	-0.7
1,797,308	+		GFF1767	0.26	-0.8
1,797,309	-		GFF1767	0.26	-1.8
1,797,316	-		GFF1767	0.28	-1.4
1,797,326	-		GFF1767	0.31	+0.4
1,797,326	-		GFF1767	0.31	-0.1
1,797,326	-		GFF1767	0.31	-0.4
1,797,326	-		GFF1767	0.31	+0.3
1,797,346	+		GFF1767	0.36	-1.8
1,797,363	+		GFF1767	0.40	-1.3
1,797,369	+		GFF1767	0.42	-1.9
1,797,371	-		GFF1767	0.42	+0.7
1,797,376	-		GFF1767	0.44	-0.3
1,797,426	+		GFF1767	0.56	+0.3
1,797,426	+		GFF1767	0.56	-0.2
1,797,436	+		GFF1767	0.59	+0.7
1,797,436	+		GFF1767	0.59	-0.7
1,797,439	-		GFF1767	0.60	-0.7
1,797,444	-		GFF1767	0.61	-0.7
1,797,444	-		GFF1767	0.61	-0.0
1,797,444	-		GFF1767	0.61	-0.8
1,797,444	-		GFF1767	0.61	-0.9
1,797,444	-		GFF1767	0.61	-1.8
1,797,444	-		GFF1767	0.61	-0.0
1,797,444	-		GFF1767	0.61	-1.4
1,797,486	+		GFF1767	0.72	-0.8
1,797,486	+		GFF1767	0.72	+1.7
1,797,486	+		GFF1767	0.72	-1.9
1,797,486	+		GFF1767	0.72	-1.7
1,797,494	-		GFF1767	0.74	+1.2
1,797,494	-		GFF1767	0.74	-0.5
1,797,496	+		GFF1767	0.74	-1.7
1,797,496	+		GFF1767	0.74	-0.2
1,797,496	+		GFF1767	0.74	-0.6
1,797,496	+		GFF1767	0.74	-0.2
1,797,496	+		GFF1767	0.74	-0.3
1,797,496	+		GFF1767	0.74	+1.2
1,797,496	+		GFF1767	0.74	+0.1
1,797,496	+		GFF1767	0.74	+0.3
1,797,496	+		GFF1767	0.74	-0.1
1,797,496	+		GFF1767	0.74	-0.9
1,797,496	+		GFF1767	0.74	+0.2
1,797,496	+		GFF1767	0.74	-0.0
1,797,496	+		GFF1767	0.74	-1.6
1,797,496	+		GFF1767	0.74	-0.5
1,797,496	+		GFF1767	0.74	+0.2
1,797,496	+		GFF1767	0.74	-0.9
1,797,496	+		GFF1767	0.74	+0.2
1,797,496	+		GFF1767	0.74	-1.6
1,797,496	+		GFF1767	0.74	-1.0
1,797,496	+		GFF1767	0.74	-1.8
1,797,496	+		GFF1767	0.74	-0.3
1,797,496	+		GFF1767	0.74	+0.8
1,797,496	+		GFF1767	0.74	+0.9
1,797,504	-		GFF1767	0.76	-0.8
1,797,504	-		GFF1767	0.76	-0.0
1,797,504	-		GFF1767	0.76	-0.9
1,797,504	-		GFF1767	0.76	-0.3
1,797,504	-		GFF1767	0.76	-0.2
1,797,504	-		GFF1767	0.76	+0.5
1,797,504	-		GFF1767	0.76	-1.6
1,797,504	-		GFF1767	0.76	-1.4
1,797,504	-		GFF1767	0.76	-1.3
1,797,504	-		GFF1767	0.76	-1.4
1,797,504	-		GFF1767	0.76	+1.0
1,797,504	-		GFF1767	0.76	-0.9
1,797,504	-		GFF1767	0.76	-0.7
1,797,504	-		GFF1767	0.76	-1.8
1,797,504	-		GFF1767	0.76	-1.6
1,797,504	-		GFF1767	0.76	-0.8
1,797,504	-		GFF1767	0.76	-1.1
1,797,504	-		GFF1767	0.76	-0.6
1,797,504	-		GFF1767	0.76	+0.1
1,797,504	-		GFF1767	0.76	-1.7
1,797,504	-		GFF1767	0.76	-0.8
1,797,504	-		GFF1767	0.76	-0.0
1,797,504	-		GFF1767	0.76	-0.6
1,797,504	-		GFF1767	0.76	+0.1
1,797,504	-		GFF1767	0.76	-1.5
1,797,504	-		GFF1767	0.76	+0.1
1,797,506	+		GFF1767	0.77	-0.6
1,797,506	+		GFF1767	0.77	-0.1
1,797,506	+		GFF1767	0.77	-0.3
1,797,506	+		GFF1767	0.77	+0.7
1,797,506	+		GFF1767	0.77	-1.8
1,797,506	+		GFF1767	0.77	+0.3
1,797,507	+		GFF1767	0.77	-1.9
1,797,514	-		GFF1767	0.79	-2.0
1,797,514	-		GFF1767	0.79	+0.6
1,797,514	-		GFF1767	0.79	+0.1
1,797,518	-		GFF1767	0.80	+1.3
1,797,525	-		GFF1767	0.82	-1.5
1,797,528	+		GFF1767	0.83	-2.0
1,797,583	+				+1.4
1,797,618	+				-0.5
1,797,621	-				-0.6
1,797,623	+				-0.7
1,797,623	+				+0.4
1,797,623	+				-1.7
1,797,626	-				+2.4
1,797,626	-				-1.8
1,797,631	-				-1.7
1,797,641	-				-0.3
1,797,698	+		GFF1768	0.13	+0.1
1,797,703	+		GFF1768	0.14	-0.6
1,797,705	+		GFF1768	0.14	-0.3
1,797,711	-		GFF1768	0.15	-0.5
1,797,711	-		GFF1768	0.15	+0.5
1,797,711	-		GFF1768	0.15	-0.9
1,797,715	+		GFF1768	0.15	+1.2
1,797,715	-		GFF1768	0.15	+0.1
1,797,724	+		GFF1768	0.16	-0.3
1,797,732	+		GFF1768	0.17	-1.3
1,797,746	-		GFF1768	0.19	-1.7
1,797,766	+		GFF1768	0.21	-2.0
1,797,777	+		GFF1768	0.23	-0.6
1,797,796	-		GFF1768	0.25	-0.1
1,797,796	-		GFF1768	0.25	-0.6
1,797,803	+		GFF1768	0.26	+0.9
1,797,810	-		GFF1768	0.27	-0.7
1,797,819	+		GFF1768	0.28	-0.6
1,797,827	-		GFF1768	0.29	-0.6
1,797,832	+		GFF1768	0.30	-0.2
1,797,858	+		GFF1768	0.33	-1.2
1,797,858	+		GFF1768	0.33	-2.0
1,797,858	+		GFF1768	0.33	-0.8
1,797,858	+		GFF1768	0.33	-1.8
1,797,866	-		GFF1768	0.34	-1.1
1,797,866	-		GFF1768	0.34	-0.0
1,797,869	+		GFF1768	0.34	-2.3
1,797,882	-		GFF1768	0.36	-0.1
1,797,905	+		GFF1768	0.38	-0.3
1,797,933	-		GFF1768	0.42	-1.3
1,797,962	+		GFF1768	0.46	-0.3
1,798,000	+		GFF1768	0.50	-1.8
1,798,013	-		GFF1768	0.52	+0.2
1,798,019	+		GFF1768	0.53	-0.8
1,798,027	-		GFF1768	0.54	-1.1
1,798,027	-		GFF1768	0.54	-0.2
1,798,034	+		GFF1768	0.54	-0.1
1,798,034	+		GFF1768	0.54	-1.8
1,798,037	-		GFF1768	0.55	+1.0
1,798,037	-		GFF1768	0.55	+0.2
1,798,037	-		GFF1768	0.55	+1.2
1,798,043	+		GFF1768	0.55	-1.7
1,798,046	+		GFF1768	0.56	-0.8
1,798,049	+		GFF1768	0.56	-0.5
1,798,049	+		GFF1768	0.56	-0.4
1,798,057	-		GFF1768	0.57	-0.8
1,798,057	-		GFF1768	0.57	+0.1
1,798,057	-		GFF1768	0.57	-0.7
1,798,057	-		GFF1768	0.57	-0.8
1,798,059	+		GFF1768	0.57	+1.1
1,798,067	-		GFF1768	0.58	+0.4
1,798,113	+		GFF1768	0.64	-0.2
1,798,118	-		GFF1768	0.65	-2.3
1,798,121	-		GFF1768	0.65	+0.1
1,798,140	-		GFF1768	0.67	-0.5
1,798,154	+		GFF1768	0.69	-0.8
1,798,175	-		GFF1768	0.72	-1.1
1,798,204	+		GFF1768	0.75	+0.8
1,798,232	-		GFF1768	0.79	+0.7
1,798,243	-		GFF1768	0.80	-0.9
1,798,264	+		GFF1768	0.83	+1.0
1,798,264	+		GFF1768	0.83	-0.8
1,798,272	+		GFF1768	0.84	-1.0
1,798,285	-		GFF1768	0.85	-0.6
1,798,309	+		GFF1768	0.88	+0.6
1,798,310	-		GFF1768	0.88	-2.0
1,798,318	+		GFF1768	0.89	-0.0
1,798,319	+		GFF1768	0.89	+1.0
1,798,331	-				-0.8
1,798,336	-				-0.6
1,798,337	+				-1.8
1,798,347	+				-0.2
1,798,347	+				-1.5
1,798,369	-				-0.8
1,798,373	+				-1.3
1,798,373	+				-1.9
1,798,381	-				-1.8
1,798,381	-				+0.3
1,798,389	-				-0.1
1,798,411	+				+0.9
1,798,419	-				-1.0
1,798,443	-				-0.5
1,798,481	+				-0.2
1,798,481	+				-1.8
1,798,484	-				-1.8
1,798,496	-				+0.2
1,798,499	+				-0.6
1,798,516	+				-0.2
1,798,516	+				+0.7
1,798,521	+				-0.3
1,798,524	-				-1.3
1,798,524	-				+0.7
1,798,539	-				-0.8
1,798,562	+				+1.3
1,798,562	+				-0.5
1,798,565	-				-1.4
1,798,570	-				-1.5
1,798,570	-				-1.3
1,798,570	-				-0.8
1,798,595	+				+0.1
1,798,595	+				+0.1
1,798,595	+				-0.8
1,798,598	-				-2.3
1,798,598	-				+0.8
1,798,598	-				-1.7
1,798,598	-				+1.4
1,798,603	-				+0.1
1,798,603	-				+0.2
1,798,631	+				-2.7
1,798,642	+		GFF1769	0.10	-0.5
1,798,642	+		GFF1769	0.10	-0.3
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