Strain Fitness in Sphingobium sp. HT1-2 around GFF1715

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,738,078	-				+0.4
1,738,154	+				+0.7
1,738,168	+				+0.7
1,738,168	+				-1.4
1,738,168	+				-1.6
1,738,168	+				+0.8
1,738,168	+				+0.5
1,738,168	+				-0.3
1,738,168	+				+0.3
1,738,168	+				+1.1
1,738,169	+				-0.3
1,738,169	+				-0.7
1,738,169	+				+1.0
1,738,169	+				-0.1
1,738,173	+				+0.7
1,738,176	-				-0.5
1,738,176	-				-0.2
1,738,176	-				+0.3
1,738,176	-				+0.9
1,738,176	-				+1.6
1,738,177	-				+0.4
1,738,177	-				+1.4
1,738,177	-				-1.6
1,738,222	-				+0.4
1,738,222	-				+0.7
1,738,224	+				-0.3
1,738,224	+				-0.2
1,738,232	-				+0.5
1,738,232	-				+0.4
1,738,242	+				-0.5
1,738,261	-		GFF1714	0.10	-2.1
1,738,272	-		GFF1714	0.12	-1.3
1,738,272	-		GFF1714	0.12	-0.9
1,738,275	+		GFF1714	0.12	+0.8
1,738,304	-		GFF1714	0.15	-0.9
1,738,352	+		GFF1714	0.20	-0.7
1,738,352	+		GFF1714	0.20	+0.5
1,738,352	+		GFF1714	0.20	+0.1
1,738,360	-		GFF1714	0.21	+0.1
1,738,360	-		GFF1714	0.21	+0.7
1,738,360	-		GFF1714	0.21	-0.0
1,738,370	+		GFF1714	0.22	-0.3
1,738,376	+		GFF1714	0.23	-0.2
1,738,376	+		GFF1714	0.23	-0.3
1,738,376	+		GFF1714	0.23	-2.7
1,738,376	+		GFF1714	0.23	-0.1
1,738,376	+		GFF1714	0.23	-1.4
1,738,384	-		GFF1714	0.24	+0.0
1,738,384	-		GFF1714	0.24	-1.9
1,738,384	-		GFF1714	0.24	-0.0
1,738,437	+		GFF1714	0.30	+0.2
1,738,437	+		GFF1714	0.30	+1.8
1,738,437	+		GFF1714	0.30	-1.1
1,738,440	-		GFF1714	0.30	-0.0
1,738,447	+		GFF1714	0.31	+0.5
1,738,450	-		GFF1714	0.31	+0.3
1,738,463	+		GFF1714	0.33	-0.8
1,738,481	-		GFF1714	0.35	-0.6
1,738,481	-		GFF1714	0.35	+0.4
1,738,540	+		GFF1714	0.41	+0.4
1,738,596	+		GFF1714	0.47	-1.0
1,738,604	-		GFF1714	0.48	-0.4
1,738,642	+		GFF1714	0.52	-0.3
1,738,650	-		GFF1714	0.53	-0.9
1,738,675	-		GFF1714	0.56	+0.5
1,738,680	-		GFF1714	0.56	-1.6
1,738,682	-		GFF1714	0.57	+1.8
1,738,732	+		GFF1714	0.62	-1.3
1,738,740	+		GFF1714	0.63	-0.4
1,738,742	-		GFF1714	0.63	+0.0
1,738,747	+		GFF1714	0.64	-0.4
1,738,776	+		GFF1714	0.67	-0.1
1,738,783	+		GFF1714	0.68	-0.5
1,738,793	-		GFF1714	0.69	+0.8
1,738,809	+		GFF1714	0.70	+0.1
1,738,811	-		GFF1714	0.71	+0.4
1,738,824	+		GFF1714	0.72	+0.8
1,738,832	-		GFF1714	0.73	-0.5
1,738,836	+		GFF1714	0.73	+0.6
1,738,848	+		GFF1714	0.75	+1.6
1,738,863	-		GFF1714	0.76	-1.4
1,738,870	+		GFF1714	0.77	-0.8
1,738,875	+		GFF1714	0.78	-0.9
1,738,897	-		GFF1714	0.80	-0.9
1,738,914	+		GFF1714	0.82	+0.2
1,738,926	+		GFF1714	0.83	-0.8
1,738,938	+		GFF1714	0.84	+0.6
1,738,941	-		GFF1714	0.85	+0.4
1,738,953	+		GFF1714	0.86	+0.2
1,738,961	-		GFF1714	0.87	+0.2
1,738,976	-		GFF1714	0.89	-0.4
1,739,026	+				+0.8
1,739,032	+				-1.1
1,739,034	-				-1.1
1,739,063	+				-2.0
1,739,096	-				+0.6
1,739,125	-				-0.4
1,739,125	-				-0.6
1,739,125	-				-0.8
1,739,169	+		GFF1715	0.12	+0.5
1,739,175	+		GFF1715	0.13	-0.7
1,739,177	-		GFF1715	0.13	-1.1
1,739,185	+		GFF1715	0.14	+0.5
1,739,199	+		GFF1715	0.16	-2.1
1,739,202	-		GFF1715	0.17	-0.2
1,739,202	-		GFF1715	0.17	-0.9
1,739,202	-		GFF1715	0.17	-0.4
1,739,202	-		GFF1715	0.17	-0.1
1,739,222	+		GFF1715	0.19	+0.2
1,739,230	-		GFF1715	0.20	-1.5
1,739,241	+		GFF1715	0.22	+0.6
1,739,269	-		GFF1715	0.25	-0.0
1,739,269	-		GFF1715	0.25	-0.5
1,739,281	+		GFF1715	0.27	-0.7
1,739,281	+		GFF1715	0.27	-0.7
1,739,281	+		GFF1715	0.27	+1.4
1,739,281	+		GFF1715	0.27	-0.6
1,739,281	+		GFF1715	0.27	+0.4
1,739,281	+		GFF1715	0.27	-0.6
1,739,289	-		GFF1715	0.28	-0.4
1,739,289	-		GFF1715	0.28	-0.8
1,739,291	+		GFF1715	0.28	-0.4
1,739,291	+		GFF1715	0.28	-0.0
1,739,299	+		GFF1715	0.29	+0.3
1,739,318	-		GFF1715	0.32	+0.3
1,739,318	-		GFF1715	0.32	+0.1
1,739,341	-		GFF1715	0.35	-0.7
1,739,341	-		GFF1715	0.35	-0.9
1,739,354	+		GFF1715	0.37	+0.1
1,739,354	+		GFF1715	0.37	+0.8
1,739,379	+		GFF1715	0.40	-1.2
1,739,387	-		GFF1715	0.41	-0.9
1,739,389	+		GFF1715	0.41	-0.1
1,739,389	+		GFF1715	0.41	+1.1
1,739,389	+		GFF1715	0.41	+0.6
1,739,389	+		GFF1715	0.41	+0.6
1,739,389	+		GFF1715	0.41	-2.5
1,739,393	-		GFF1715	0.42	+0.2
1,739,393	-		GFF1715	0.42	+0.5
1,739,397	-		GFF1715	0.42	-0.1
1,739,397	-		GFF1715	0.42	+1.0
1,739,397	-		GFF1715	0.42	+1.3
1,739,397	-		GFF1715	0.42	+0.9
1,739,397	-		GFF1715	0.42	+1.0
1,739,416	-		GFF1715	0.45	-2.0
1,739,478	+		GFF1715	0.53	+0.3
1,739,478	+		GFF1715	0.53	-1.1
1,739,478	+		GFF1715	0.53	+0.4
1,739,486	-		GFF1715	0.54	-0.7
1,739,486	-		GFF1715	0.54	-0.2
1,739,486	-		GFF1715	0.54	+1.6
1,739,486	-		GFF1715	0.54	+0.0
1,739,493	+		GFF1715	0.55	-1.5
1,739,493	+		GFF1715	0.55	+0.8
1,739,493	+		GFF1715	0.55	+0.3
1,739,493	+		GFF1715	0.55	-1.9
1,739,493	+		GFF1715	0.55	-0.6
1,739,501	-		GFF1715	0.56	-1.3
1,739,501	-		GFF1715	0.56	-0.5
1,739,504	+		GFF1715	0.56	-0.8
1,739,504	+		GFF1715	0.56	-0.5
1,739,504	+		GFF1715	0.56	+0.3
1,739,512	-		GFF1715	0.57	-0.5
1,739,512	-		GFF1715	0.57	-0.6
1,739,512	-		GFF1715	0.57	-1.3
1,739,512	-		GFF1715	0.57	-0.3
1,739,512	-		GFF1715	0.57	-1.3
1,739,512	-		GFF1715	0.57	-1.7
1,739,514	+		GFF1715	0.58	-0.4
1,739,514	+		GFF1715	0.58	-0.8
1,739,517	-		GFF1715	0.58	-1.2
1,739,517	-		GFF1715	0.58	-0.4
1,739,522	-		GFF1715	0.59	+0.9
1,739,522	-		GFF1715	0.59	+0.2
1,739,522	-		GFF1715	0.59	-1.0
1,739,524	+		GFF1715	0.59	+1.4
1,739,532	-		GFF1715	0.60	-0.5
1,739,532	-		GFF1715	0.60	-0.1
1,739,534	+		GFF1715	0.60	-1.1
1,739,558	+		GFF1715	0.64	+0.5
1,739,558	+		GFF1715	0.64	+0.7
1,739,568	+		GFF1715	0.65	+1.2
1,739,568	+		GFF1715	0.65	+0.1
1,739,571	-		GFF1715	0.65	+0.2
1,739,596	-		GFF1715	0.69	+0.8
1,739,610	+		GFF1715	0.70	+0.5
1,739,618	-		GFF1715	0.71	-0.8
1,739,618	-		GFF1715	0.71	-0.7
1,739,628	-		GFF1715	0.73	+1.8
1,739,643	+		GFF1715	0.75	-0.9
1,739,643	+		GFF1715	0.75	+0.4
1,739,658	+		GFF1715	0.77	-1.3
1,739,666	-		GFF1715	0.78	-1.2
1,739,695	+		GFF1715	0.82	+0.1
1,739,724	-		GFF1715	0.85	+0.7
1,739,726	+		GFF1715	0.86	-1.8
1,739,726	+		GFF1715	0.86	-0.1
1,739,726	+		GFF1715	0.86	-1.5
1,739,726	+		GFF1715	0.86	-1.2
1,739,726	+		GFF1715	0.86	-0.3
1,739,726	+		GFF1715	0.86	-0.7
1,739,726	+		GFF1715	0.86	+0.8
1,739,726	+		GFF1715	0.86	+0.9
1,739,726	+		GFF1715	0.86	+0.9
1,739,726	+		GFF1715	0.86	+1.1
1,739,734	-		GFF1715	0.87	-0.1
1,739,734	-		GFF1715	0.87	-1.5
1,739,734	-		GFF1715	0.87	-0.2
1,739,734	-		GFF1715	0.87	+1.0
1,739,734	-		GFF1715	0.87	-1.5
1,739,734	-		GFF1715	0.87	-0.3
1,739,734	-		GFF1715	0.87	+0.3
1,739,734	-		GFF1715	0.87	-0.5
1,739,734	-		GFF1715	0.87	-1.1
1,739,734	-		GFF1715	0.87	+0.8
1,739,734	-		GFF1715	0.87	-1.3
1,739,734	-		GFF1715	0.87	+0.3
1,739,742	+		GFF1715	0.88	-0.7
1,739,742	+		GFF1715	0.88	+1.0
1,739,755	-		GFF1715	0.89	+0.7
1,739,767	+				+0.9
1,739,769	-				-0.3
1,739,774	-				-0.1
1,739,776	+				-1.6
1,739,784	-				-0.1
1,739,798	+				-1.0
1,739,798	+				+1.8
1,739,806	-				+0.7
1,739,873	+		GFF1716	0.12	-2.1
1,739,892	-		GFF1716	0.26	-0.2
1,739,906	+		GFF1716	0.35	+0.5
1,739,918	+		GFF1716	0.44	+0.4
1,739,928	+		GFF1716	0.51	-0.2
1,739,928	+		GFF1716	0.51	-0.1
1,739,928	+		GFF1716	0.51	-0.3
1,739,928	+		GFF1716	0.51	+0.7
1,739,933	+		GFF1716	0.54	-1.8
1,739,933	+		GFF1716	0.54	-2.3
1,739,933	+		GFF1716	0.54	-1.1
1,739,938	+		GFF1716	0.58	-0.5
1,739,941	-		GFF1716	0.60	-0.8
1,739,941	-		GFF1716	0.60	-0.8
1,739,943	+		GFF1716	0.61	-0.1
1,739,943	+		GFF1716	0.61	-1.1
1,739,950	-		GFF1716	0.66	+0.2
1,739,951	-		GFF1716	0.67	-0.7
1,739,951	-		GFF1716	0.67	+0.1
1,739,951	-		GFF1716	0.67	-0.0
1,739,979	+		GFF1716	0.86	+0.1
1,739,979	+		GFF1716	0.86	+0.2
1,739,979	+		GFF1716	0.86	-0.6
1,739,979	+		GFF1716	0.86	+0.0
1,739,979	+		GFF1716	0.86	-0.1
1,739,979	+		GFF1716	0.86	-2.3
1,739,979	+		GFF1716	0.86	-0.5
1,739,982	-		GFF1716	0.88	-0.0
1,739,987	-				-0.4
1,739,987	-				+0.8
1,739,991	-				-0.9
1,740,001	-				-0.3
1,740,006	-				+0.5
1,740,008	-				-0.4
1,740,017	+				+0.8
1,740,017	+				+0.2
1,740,017	+				+0.2
1,740,025	-				-2.2
1,740,025	-				-1.2
1,740,025	-				+0.6
1,740,025	-				-1.0
1,740,055	+				-0.5
1,740,063	-				-0.9
1,740,081	-				-0.5
1,740,082	-				+0.1
1,740,087	+				+0.3
1,740,087	+				-0.4
1,740,095	-				+0.3
1,740,095	-				-1.3
1,740,095	-				-1.7
1,740,095	-				-0.5
1,740,095	-				-0.2
1,740,100	-				-0.9
1,740,100	-				-0.7
1,740,101	+				+0.9
1,740,109	-				-1.4
1,740,110	-				-0.4
1,740,124	-				-1.1
1,740,169	-		GFF1717	0.15	-0.4
1,740,179	+		GFF1717	0.16	-0.4
1,740,180	-		GFF1717	0.16	-1.6
1,740,180	-		GFF1717	0.16	+1.1
1,740,184	+		GFF1717	0.17	-0.1
1,740,184	+		GFF1717	0.17	+0.6
1,740,187	-		GFF1717	0.17	+0.2
1,740,205	-		GFF1717	0.19	-1.2
1,740,224	-		GFF1717	0.22	-0.4
1,740,224	-		GFF1717	0.22	-1.0
1,740,224	-		GFF1717	0.22	-1.4
1,740,224	-		GFF1717	0.22	-0.8
1,740,224	-		GFF1717	0.22	-1.0
1,740,247	+		GFF1717	0.25	+0.6
1,740,247	-		GFF1717	0.25	+0.3
1,740,247	-		GFF1717	0.25	-1.1
1,740,248	-		GFF1717	0.25	+0.6
1,740,255	-		GFF1717	0.26	+0.9
1,740,255	-		GFF1717	0.26	-0.2
1,740,257	+		GFF1717	0.27	+0.6
1,740,260	-		GFF1717	0.27	+0.4
1,740,362	-		GFF1717	0.41	-0.1
1,740,364	+		GFF1717	0.41	+0.7
1,740,364	+		GFF1717	0.41	-0.9
1,740,369	+		GFF1717	0.42	-1.1
1,740,369	+		GFF1717	0.42	-0.4
1,740,374	+		GFF1717	0.42	-2.4
1,740,375	+		GFF1717	0.43	+0.9
1,740,377	-		GFF1717	0.43	-0.6
1,740,377	-		GFF1717	0.43	-2.1
1,740,377	-		GFF1717	0.43	+0.0
1,740,379	+		GFF1717	0.43	-1.0
1,740,382	-		GFF1717	0.44	-0.7
1,740,382	-		GFF1717	0.44	+0.3
1,740,382	-		GFF1717	0.44	+0.3
1,740,382	-		GFF1717	0.44	-0.6
1,740,382	-		GFF1717	0.44	+0.9
1,740,387	-		GFF1717	0.44	-1.0
1,740,393	-		GFF1717	0.45	-0.4
1,740,393	-		GFF1717	0.45	+0.4
1,740,401	-		GFF1717	0.46	+0.3
1,740,425	+		GFF1717	0.49	-1.4
1,740,433	-		GFF1717	0.50	-1.4
1,740,454	+		GFF1717	0.53	+1.9
1,740,460	-		GFF1717	0.54	+1.7
1,740,462	+		GFF1717	0.54	-2.0
1,740,479	+		GFF1717	0.57	-1.1
1,740,479	+		GFF1717	0.57	-0.7
1,740,479	+		GFF1717	0.57	-1.7
1,740,479	+		GFF1717	0.57	-0.4
1,740,479	+		GFF1717	0.57	-0.1
1,740,479	+		GFF1717	0.57	-0.5
1,740,479	+		GFF1717	0.57	-0.1
1,740,484	+		GFF1717	0.57	-0.7
1,740,487	-		GFF1717	0.58	-1.5
1,740,487	-		GFF1717	0.58	+0.3
1,740,487	-		GFF1717	0.58	-0.9
1,740,487	-		GFF1717	0.58	+0.9
1,740,492	-		GFF1717	0.59	-0.5
1,740,511	+		GFF1717	0.61	-0.6
1,740,519	-		GFF1717	0.62	+1.0
1,740,519	-		GFF1717	0.62	-1.9
1,740,538	-		GFF1717	0.65	+1.3
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