Strain Fitness in Sphingobium sp. HT1-2 around GFF1587

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,614,437	+		GFF1585	0.40	-0.9
1,614,445	-		GFF1585	0.41	-0.9
1,614,445	-		GFF1585	0.41	-0.0
1,614,446	+		GFF1585	0.41	-1.5
1,614,446	+		GFF1585	0.41	+0.3
1,614,446	+		GFF1585	0.41	-0.5
1,614,447	+		GFF1585	0.41	-0.6
1,614,451	+		GFF1585	0.42	-1.0
1,614,455	-		GFF1585	0.42	-0.0
1,614,455	-		GFF1585	0.42	+0.5
1,614,455	-		GFF1585	0.42	-1.2
1,614,466	+		GFF1585	0.43	-0.6
1,614,523	-		GFF1585	0.48	-0.5
1,614,523	-		GFF1585	0.48	+1.0
1,614,528	-		GFF1585	0.48	-1.0
1,614,569	+		GFF1585	0.52	+0.9
1,614,577	-		GFF1585	0.53	-0.7
1,614,671	-		GFF1585	0.61	-1.0
1,614,674	+		GFF1585	0.61	-0.0
1,614,682	-		GFF1585	0.62	+0.2
1,614,690	+		GFF1585	0.63	+0.5
1,614,690	+		GFF1585	0.63	-1.5
1,614,690	+		GFF1585	0.63	-0.5
1,614,690	+		GFF1585	0.63	+1.0
1,614,690	+		GFF1585	0.63	-1.3
1,614,695	+		GFF1585	0.63	+0.5
1,614,695	+		GFF1585	0.63	-0.5
1,614,695	+		GFF1585	0.63	+0.5
1,614,695	+		GFF1585	0.63	-0.2
1,614,695	+		GFF1585	0.63	+0.2
1,614,698	-		GFF1585	0.63	+0.8
1,614,698	-		GFF1585	0.63	-0.4
1,614,698	-		GFF1585	0.63	-1.4
1,614,703	-		GFF1585	0.64	-0.9
1,614,703	-		GFF1585	0.64	-0.1
1,614,708	-		GFF1585	0.64	+0.4
1,614,718	-		GFF1585	0.65	-2.6
1,614,721	+		GFF1585	0.65	-1.7
1,614,749	+		GFF1585	0.68	-1.0
1,614,749	+		GFF1585	0.68	+0.0
1,614,762	+		GFF1585	0.69	-0.5
1,614,762	+		GFF1585	0.69	+1.7
1,614,770	-		GFF1585	0.70	-1.8
1,614,775	-		GFF1585	0.70	-0.9
1,614,775	-		GFF1585	0.70	+1.4
1,614,775	-		GFF1585	0.70	-0.1
1,614,776	+		GFF1585	0.70	-0.9
1,614,784	-		GFF1585	0.71	-0.5
1,614,785	-		GFF1585	0.71	-1.0
1,614,794	-		GFF1585	0.72	+1.1
1,614,797	+		GFF1585	0.72	-0.5
1,614,805	-		GFF1585	0.73	-0.5
1,614,805	-		GFF1585	0.73	+0.9
1,614,805	-		GFF1585	0.73	-0.2
1,614,809	+		GFF1585	0.73	-1.2
1,614,809	+		GFF1585	0.73	-1.3
1,614,817	-		GFF1585	0.74	-0.3
1,614,841	+		GFF1585	0.76	-0.1
1,614,868	+		GFF1585	0.78	-0.3
1,614,876	-		GFF1585	0.79	-0.7
1,614,896	+		GFF1585	0.81	-0.8
1,614,896	+		GFF1585	0.81	-1.3
1,614,942	-		GFF1585	0.85	+0.5
1,614,950	-		GFF1585	0.85	-2.1
1,614,970	+		GFF1585	0.87	-1.3
1,614,971	+		GFF1585	0.87	-0.9
1,614,979	-		GFF1585	0.88	-1.0
1,614,991	-		GFF1585	0.89	+0.8
1,615,015	-				+0.6
1,615,021	-				-1.6
1,615,043	+				-0.4
1,615,098	-				-2.8
1,615,133	+				+0.1
1,615,142	+				-1.4
1,615,142	+				-2.0
1,615,154	+				+0.6
1,615,237	+				-0.4
1,615,351	-				+1.1
1,615,408	+				+0.4
1,615,408	+				+0.1
1,615,408	+				-0.4
1,615,416	-				-0.7
1,615,416	-				-1.1
1,615,432	+				-1.2
1,615,451	+				-0.2
1,615,451	-				+0.6
1,615,457	+				-0.6
1,615,457	+				-2.2
1,615,457	+				-0.2
1,615,459	-				-0.0
1,615,459	-				+1.0
1,615,459	-				-0.6
1,615,459	-				+0.3
1,615,459	-				-0.4
1,615,459	-				-1.4
1,615,465	-		GFF1587	0.11	+0.8
1,615,465	-		GFF1587	0.11	-0.9
1,615,481	+		GFF1587	0.16	-1.7
1,615,481	+		GFF1587	0.16	-1.0
1,615,493	+		GFF1587	0.19	-0.5
1,615,493	+		GFF1587	0.19	-1.3
1,615,493	+		GFF1587	0.19	+0.4
1,615,553	+		GFF1587	0.35	+0.6
1,615,619	-		GFF1587	0.52	-1.5
1,615,627	+		GFF1587	0.54	-2.0
1,615,634	-		GFF1587	0.56	-0.8
1,615,635	-		GFF1587	0.56	+0.2
1,615,635	-		GFF1587	0.56	-0.8
1,615,635	-		GFF1587	0.56	-0.1
1,615,665	-		GFF1587	0.64	+1.1
1,615,711	-		GFF1587	0.76	-1.3
1,615,738	-		GFF1587	0.84	+1.0
1,615,765	+				-0.7
1,615,765	+				-0.8
1,615,770	+				-0.6
1,615,770	+				+0.4
1,615,773	-				+0.2
1,615,773	-				-0.3
1,615,778	-				-0.7
1,615,803	+				-0.2
1,615,816	-		GFF1588	0.10	-0.2
1,615,836	-		GFF1588	0.17	+0.4
1,615,836	-		GFF1588	0.17	-0.6
1,615,840	+		GFF1588	0.18	+0.2
1,615,850	-		GFF1588	0.21	+0.2
1,615,852	+		GFF1588	0.22	-0.5
1,615,860	-		GFF1588	0.25	-1.1
1,615,860	-		GFF1588	0.25	-2.1
1,615,860	-		GFF1588	0.25	-0.4
1,615,939	-		GFF1588	0.50	-0.0
1,615,952	-		GFF1588	0.54	-0.8
1,615,954	-		GFF1588	0.55	-0.2
1,615,954	-		GFF1588	0.55	-2.0
1,615,995	-		GFF1588	0.68	-0.4
1,616,005	+		GFF1588	0.72	-0.9
1,616,026	-		GFF1588	0.78	+0.2
1,616,026	-		GFF1588	0.78	-0.5
1,616,042	-		GFF1588	0.83	-0.4
1,616,065	-				-0.5
1,616,065	-				-0.6
1,616,065	-				+1.6
1,616,074	-				+1.1
1,616,081	-				+1.9
1,616,081	-				+0.8
1,616,139	-				+0.2
1,616,152	-				+0.2
1,616,162	+				+1.3
1,616,174	-				-1.2
1,616,212	-				-1.4
1,616,229	+				-0.3
1,616,238	+				-0.4
1,616,238	+				-1.5
1,616,281	+		GFF1589	0.21	+1.6
1,616,318	-		GFF1589	0.32	+0.5
1,616,325	-		GFF1589	0.34	+0.1
1,616,325	-		GFF1589	0.34	+1.0
1,616,336	-		GFF1589	0.37	-0.9
1,616,346	-		GFF1589	0.40	-0.7
1,616,372	-		GFF1589	0.48	+0.6
1,616,407	+		GFF1589	0.58	-0.9
1,616,443	+		GFF1589	0.69	-1.5
1,616,443	+		GFF1589	0.69	-0.9
1,616,443	+		GFF1589	0.69	+0.9
1,616,443	+		GFF1589	0.69	-1.7
1,616,443	+		GFF1589	0.69	-0.9
1,616,451	-		GFF1589	0.71	-1.0
1,616,475	+		GFF1589	0.78	-1.7
1,616,502	+		GFF1589	0.86	-1.2
1,616,536	+				-0.8
1,616,541	+				-1.7
1,616,541	+				-1.1
1,616,546	+				+0.8
1,616,549	-				-1.5
1,616,586	+				-0.9
1,616,586	+				-0.2
1,616,586	+				-1.4
1,616,592	+				-1.0
1,616,592	+				-0.7
1,616,592	+				-0.8
1,616,592	+				-0.7
1,616,594	-				-0.5
1,616,600	-				-0.6
1,616,600	-				-0.3
1,616,600	-				+1.2
1,616,600	-				+0.1
1,616,609	+				-0.6
1,616,609	+				-0.5
1,616,609	+				-1.2
1,616,609	+				+0.6
1,616,609	+				+0.5
1,616,609	+				+0.1
1,616,609	+				-0.2
1,616,609	+				-0.6
1,616,609	+				-1.6
1,616,609	+				-0.1
1,616,617	-				-0.6
1,616,617	-				+0.5
1,616,617	-				+0.6
1,616,617	-				-0.9
1,616,617	-				-2.1
1,616,617	-				-0.4
1,616,617	-				+0.2
1,616,617	-				+1.6
1,616,619	+				-0.7
1,616,656	-				-0.2
1,616,673	-				-1.6
1,616,679	-				-0.5
1,616,687	-				+1.3
1,616,708	+				-0.9
1,616,708	+				-1.8
1,616,708	+				+0.2
1,616,708	+				+1.0
1,616,716	-				-1.0
1,616,716	-				+0.8
1,616,716	-				+0.8
1,616,716	-				-0.5
1,616,723	-				-0.1
1,616,733	+		GFF1590	0.10	+0.8
1,616,733	+		GFF1590	0.10	-1.2
1,616,733	+		GFF1590	0.10	+0.5
1,616,733	+		GFF1590	0.10	+1.5
1,616,741	-		GFF1590	0.11	+0.1
1,616,764	-		GFF1590	0.12	+0.3