Strain Fitness in Sphingobium sp. HT1-2 around GFF1525

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,552,940	+		GFF1523	0.81	-0.9
1,552,941	-		GFF1523	0.81	-0.4
1,552,948	-		GFF1523	0.82	-1.3
1,552,948	-		GFF1523	0.82	+2.2
1,552,948	-		GFF1523	0.82	+1.3
1,552,954	+		GFF1523	0.82	+0.4
1,552,958	-		GFF1523	0.83	+1.1
1,552,960	+		GFF1523	0.83	-1.4
1,552,960	+		GFF1523	0.83	-0.2
1,552,994	-		GFF1523	0.85	-2.1
1,552,995	+		GFF1523	0.85	+0.4
1,553,003	-		GFF1523	0.86	+0.2
1,553,003	-		GFF1523	0.86	-1.3
1,553,004	-		GFF1523	0.86	-1.1
1,553,009	-		GFF1523	0.86	-0.9
1,553,020	+		GFF1523	0.87	+0.6
1,553,021	+		GFF1523	0.87	+1.3
1,553,029	-		GFF1523	0.88	-1.0
1,553,035	+		GFF1523	0.88	-0.2
1,553,035	+		GFF1523	0.88	+0.2
1,553,040	-		GFF1523	0.89	-1.3
1,553,043	-		GFF1523	0.89	-1.2
1,553,043	-		GFF1523	0.89	-0.6
1,553,076	+				-0.4
1,553,084	-				-0.6
1,553,089	-				-0.4
1,553,109	+				-1.9
1,553,117	-				-0.2
1,553,127	+				-1.1
1,553,127	+				+0.2
1,553,170	-				-0.3
1,553,196	-				-0.2
1,553,241	+				+0.6
1,553,248	+				-1.5
1,553,272	+				-0.2
1,553,321	+				+0.0
1,553,325	-				+1.0
1,553,349	+		GFF1524	0.11	+1.2
1,553,401	+		GFF1524	0.19	+0.1
1,553,438	+		GFF1524	0.25	+1.4
1,553,447	+		GFF1524	0.27	-1.0
1,553,450	-		GFF1524	0.27	-0.7
1,553,455	-		GFF1524	0.28	-1.0
1,553,455	-		GFF1524	0.28	-0.5
1,553,455	-		GFF1524	0.28	-0.4
1,553,455	-		GFF1524	0.28	-1.0
1,553,457	+		GFF1524	0.29	+0.5
1,553,457	+		GFF1524	0.29	+0.6
1,553,457	+		GFF1524	0.29	-1.1
1,553,457	+		GFF1524	0.29	-0.8
1,553,457	+		GFF1524	0.29	+0.1
1,553,457	+		GFF1524	0.29	-0.9
1,553,457	+		GFF1524	0.29	+0.7
1,553,457	+		GFF1524	0.29	-1.8
1,553,457	+		GFF1524	0.29	+0.5
1,553,457	+		GFF1524	0.29	-0.1
1,553,457	+		GFF1524	0.29	-1.2
1,553,457	+		GFF1524	0.29	-0.7
1,553,457	+		GFF1524	0.29	+0.2
1,553,457	+		GFF1524	0.29	-1.3
1,553,457	+		GFF1524	0.29	-0.5
1,553,457	+		GFF1524	0.29	-0.4
1,553,457	+		GFF1524	0.29	+0.6
1,553,460	-		GFF1524	0.29	-1.3
1,553,465	-		GFF1524	0.30	+0.2
1,553,465	-		GFF1524	0.30	+2.2
1,553,465	-		GFF1524	0.30	-2.1
1,553,465	-		GFF1524	0.30	-0.6
1,553,465	-		GFF1524	0.30	+0.5
1,553,465	-		GFF1524	0.30	+0.3
1,553,465	-		GFF1524	0.30	+0.6
1,553,465	-		GFF1524	0.30	-0.6
1,553,465	-		GFF1524	0.30	-2.2
1,553,465	-		GFF1524	0.30	-0.4
1,553,465	-		GFF1524	0.30	+0.9
1,553,465	-		GFF1524	0.30	+1.0
1,553,465	-		GFF1524	0.30	+0.4
1,553,465	-		GFF1524	0.30	-2.0
1,553,465	-		GFF1524	0.30	-0.2
1,553,465	-		GFF1524	0.30	-1.1
1,553,465	-		GFF1524	0.30	+0.0
1,553,465	-		GFF1524	0.30	-2.3
1,553,465	-		GFF1524	0.30	-1.1
1,553,465	-		GFF1524	0.30	-1.2
1,553,465	-		GFF1524	0.30	-0.2
1,553,477	-		GFF1524	0.32	+0.9
1,553,479	+		GFF1524	0.32	-1.7
1,553,487	-		GFF1524	0.33	+0.5
1,553,508	-		GFF1524	0.37	-0.3
1,553,518	-		GFF1524	0.38	-1.9
1,553,532	+		GFF1524	0.41	+0.7
1,553,550	+		GFF1524	0.43	-0.3
1,553,550	+		GFF1524	0.43	-1.4
1,553,550	+		GFF1524	0.43	-0.2
1,553,557	+		GFF1524	0.45	-1.7
1,553,558	-		GFF1524	0.45	-0.9
1,553,558	-		GFF1524	0.45	+0.4
1,553,564	-		GFF1524	0.46	+0.5
1,553,568	+		GFF1524	0.46	-0.9
1,553,579	+		GFF1524	0.48	+0.5
1,553,587	-		GFF1524	0.49	-0.1
1,553,613	+		GFF1524	0.54	-0.4
1,553,621	-		GFF1524	0.55	-0.1
1,553,621	-		GFF1524	0.55	+0.8
1,553,631	-		GFF1524	0.57	-1.8
1,553,650	+		GFF1524	0.60	+0.9
1,553,650	+		GFF1524	0.60	-1.9
1,553,655	+		GFF1524	0.60	-1.1
1,553,658	-		GFF1524	0.61	+0.8
1,553,658	-		GFF1524	0.61	+0.5
1,553,658	-		GFF1524	0.61	-0.9
1,553,658	-		GFF1524	0.61	-2.6
1,553,658	-		GFF1524	0.61	+0.2
1,553,664	+		GFF1524	0.62	+0.6
1,553,669	+		GFF1524	0.63	+0.5
1,553,669	+		GFF1524	0.63	-0.3
1,553,669	+		GFF1524	0.63	+2.4
1,553,669	+		GFF1524	0.63	-1.5
1,553,669	+		GFF1524	0.63	+0.7
1,553,669	+		GFF1524	0.63	+0.2
1,553,669	+		GFF1524	0.63	-1.3
1,553,669	+		GFF1524	0.63	-0.0
1,553,669	+		GFF1524	0.63	-0.6
1,553,669	+		GFF1524	0.63	-1.1
1,553,677	+		GFF1524	0.64	+0.0
1,553,677	-		GFF1524	0.64	+0.7
1,553,677	-		GFF1524	0.64	-1.9
1,553,677	-		GFF1524	0.64	+0.3
1,553,677	-		GFF1524	0.64	-0.9
1,553,677	-		GFF1524	0.64	+0.9
1,553,677	-		GFF1524	0.64	+1.7
1,553,682	-		GFF1524	0.65	-0.8
1,553,711	-		GFF1524	0.69	-1.4
1,553,711	-		GFF1524	0.69	-0.3
1,553,724	+		GFF1524	0.71	-1.6
1,553,724	+		GFF1524	0.71	-0.1
1,553,732	-		GFF1524	0.73	-1.9
1,553,732	-		GFF1524	0.73	+0.8
1,553,732	-		GFF1524	0.73	-0.2
1,553,732	-		GFF1524	0.73	+0.9
1,553,732	-		GFF1524	0.73	+0.4
1,553,732	-		GFF1524	0.73	-1.0
1,553,732	-		GFF1524	0.73	-0.6
1,553,734	+		GFF1524	0.73	-0.0
1,553,739	+		GFF1524	0.74	+0.7
1,553,742	-		GFF1524	0.74	+0.3
1,553,742	-		GFF1524	0.74	-0.6
1,553,742	-		GFF1524	0.74	-1.8
1,553,744	+		GFF1524	0.75	-0.4
1,553,760	+		GFF1524	0.77	-1.2
1,553,776	-		GFF1524	0.80	-1.1
1,553,778	+		GFF1524	0.80	-0.6
1,553,802	-		GFF1524	0.84	-0.2
1,553,825	-		GFF1524	0.88	+0.4
1,553,825	-		GFF1524	0.88	-1.9
1,553,835	-		GFF1524	0.89	+0.0
1,553,846	+				-1.1
1,553,867	-				+0.2
1,553,871	+				-0.6
1,553,871	+				+0.1
1,553,871	+				+0.3
1,553,879	-				+0.2
1,553,879	-				-1.1
1,553,894	+				+1.5
1,553,894	+				-0.6
1,553,896	+				-1.4
1,553,896	+				-0.4
1,553,896	+				+0.5
1,553,896	+				-0.8
1,553,896	+				-0.0
1,553,896	+				-1.6
1,553,896	+				-0.8
1,553,896	+				-0.5
1,553,896	+				-0.1
1,553,896	+				-0.8
1,553,902	-				-0.1
1,553,902	-				+0.4
1,553,902	-				-2.3
1,553,902	-				+1.2
1,553,904	-				-1.3
1,553,904	-				-0.4
1,553,904	-				-0.8
1,553,904	-				+0.2
1,553,904	-				-0.8
1,553,904	-				+0.1
1,553,904	-				+0.2
1,553,908	+				-0.5
1,553,915	+				-1.6
1,553,915	+				+0.6
1,553,915	-				+0.7
1,553,925	+				-0.2
1,553,925	+				-0.1
1,553,925	+				-0.2
1,553,925	+				-1.0
1,553,925	+				+1.4
1,553,933	-				-2.0
1,553,933	-				-1.9
1,553,933	-				+0.2
1,553,933	-				-0.3
1,553,933	-				+0.0
1,553,933	-				-0.1
1,553,933	-				+0.3
1,553,933	-				-1.2
1,553,937	+				+1.3
1,553,945	-				-0.6
1,553,945	-				-1.0
1,553,945	-				-0.6
1,553,949	-				-1.5
1,553,952	+				+0.0
1,553,962	+				-1.4
1,553,975	-				-1.5
1,554,022	+				-2.3
1,554,028	+				-0.3
1,554,036	-				+0.6
1,554,036	-				-0.0
1,554,051	+				+0.3
1,554,054	+				+0.5
1,554,054	+				-1.1
1,554,054	+				-0.3
1,554,062	-		GFF1525	0.10	+0.3
1,554,062	-		GFF1525	0.10	-0.8
1,554,075	+		GFF1525	0.11	+0.7
1,554,104	-		GFF1525	0.14	-1.7
1,554,108	+		GFF1525	0.14	+1.3
1,554,108	+		GFF1525	0.14	+1.3
1,554,112	-		GFF1525	0.14	-1.2
1,554,128	-		GFF1525	0.15	-0.7
1,554,142	+		GFF1525	0.17	+0.8
1,554,142	+		GFF1525	0.17	-0.8
1,554,142	+		GFF1525	0.17	+1.4
1,554,142	+		GFF1525	0.17	-0.6
1,554,142	+		GFF1525	0.17	-0.7
1,554,142	+		GFF1525	0.17	+0.7
1,554,142	+		GFF1525	0.17	-0.2
1,554,142	+		GFF1525	0.17	-1.1
1,554,142	+		GFF1525	0.17	+0.8
1,554,142	+		GFF1525	0.17	-0.1
1,554,142	+		GFF1525	0.17	+0.8
1,554,143	+		GFF1525	0.17	-1.7
1,554,145	-		GFF1525	0.17	-1.2
1,554,147	+		GFF1525	0.17	-0.2
1,554,147	+		GFF1525	0.17	+0.4
1,554,147	+		GFF1525	0.17	+1.1
1,554,147	+		GFF1525	0.17	+0.1
1,554,147	+		GFF1525	0.17	+1.5
1,554,147	+		GFF1525	0.17	+0.5
1,554,150	-		GFF1525	0.17	+0.0
1,554,150	-		GFF1525	0.17	-0.4
1,554,152	+		GFF1525	0.17	-1.0
1,554,155	-		GFF1525	0.18	-1.1
1,554,155	-		GFF1525	0.18	+0.5
1,554,155	-		GFF1525	0.18	+0.2
1,554,155	-		GFF1525	0.18	-0.2
1,554,155	-		GFF1525	0.18	-0.0
1,554,157	+		GFF1525	0.18	-2.0
1,554,157	+		GFF1525	0.18	+0.2
1,554,157	+		GFF1525	0.18	-0.1
1,554,157	+		GFF1525	0.18	-0.4
1,554,157	+		GFF1525	0.18	+0.2
1,554,157	+		GFF1525	0.18	+0.5
1,554,157	+		GFF1525	0.18	-1.1
1,554,159	+		GFF1525	0.18	+1.4
1,554,163	+		GFF1525	0.18	-0.4
1,554,165	-		GFF1525	0.18	-1.4
1,554,165	-		GFF1525	0.18	+0.9
1,554,165	-		GFF1525	0.18	-0.3
1,554,213	+		GFF1525	0.22	-1.0
1,554,213	+		GFF1525	0.22	-1.9
1,554,213	+		GFF1525	0.22	+0.9
1,554,213	+		GFF1525	0.22	-1.8
1,554,213	+		GFF1525	0.22	-1.3
1,554,213	+		GFF1525	0.22	-0.3
1,554,213	+		GFF1525	0.22	-1.9
1,554,213	+		GFF1525	0.22	-0.1
1,554,213	+		GFF1525	0.22	-1.4
1,554,213	+		GFF1525	0.22	+0.2
1,554,213	+		GFF1525	0.22	+0.7
1,554,213	+		GFF1525	0.22	-0.1
1,554,213	+		GFF1525	0.22	+1.4
1,554,221	-		GFF1525	0.23	+0.7
1,554,221	-		GFF1525	0.23	+1.5
1,554,221	-		GFF1525	0.23	-1.6
1,554,221	-		GFF1525	0.23	+0.9
1,554,221	-		GFF1525	0.23	-1.3
1,554,221	-		GFF1525	0.23	-1.1
1,554,221	-		GFF1525	0.23	-0.5
1,554,221	-		GFF1525	0.23	-0.5
1,554,221	-		GFF1525	0.23	-0.2
1,554,221	-		GFF1525	0.23	-0.3
1,554,223	+		GFF1525	0.23	+0.2
1,554,231	-		GFF1525	0.23	+0.5
1,554,239	-		GFF1525	0.24	+0.8
1,554,239	-		GFF1525	0.24	-2.0
1,554,258	-		GFF1525	0.25	-1.7
1,554,258	-		GFF1525	0.25	-0.6
1,554,270	+		GFF1525	0.26	-1.7
1,554,270	+		GFF1525	0.26	+0.7
1,554,270	+		GFF1525	0.26	-1.5
1,554,270	+		GFF1525	0.26	-0.3
1,554,278	-		GFF1525	0.27	-0.8
1,554,278	-		GFF1525	0.27	-1.5
1,554,278	-		GFF1525	0.27	-0.3
1,554,305	+		GFF1525	0.29	-0.9
1,554,313	-		GFF1525	0.30	+0.4
1,554,322	+		GFF1525	0.30	-0.5
1,554,322	+		GFF1525	0.30	+0.8
1,554,322	+		GFF1525	0.30	-1.4
1,554,322	+		GFF1525	0.30	-1.3
1,554,334	-		GFF1525	0.31	-1.9
1,554,348	-		GFF1525	0.32	-0.9
1,554,349	-		GFF1525	0.32	+2.0
1,554,359	+		GFF1525	0.33	-1.9
1,554,371	+		GFF1525	0.34	+0.5
1,554,374	-		GFF1525	0.34	+0.7
1,554,379	-		GFF1525	0.35	+0.6
1,554,379	-		GFF1525	0.35	-1.2
1,554,379	-		GFF1525	0.35	-2.1
1,554,411	-		GFF1525	0.37	+0.1
1,554,422	-		GFF1525	0.38	-1.1
1,554,439	+		GFF1525	0.39	+0.9
1,554,439	+		GFF1525	0.39	-1.9
1,554,439	+		GFF1525	0.39	-1.1
1,554,439	+		GFF1525	0.39	-0.8
1,554,447	-		GFF1525	0.40	-1.1
1,554,447	-		GFF1525	0.40	-0.7
1,554,452	-		GFF1525	0.40	-1.6
1,554,520	-		GFF1525	0.46	+0.9
1,554,527	-		GFF1525	0.46	-1.3
1,554,547	+		GFF1525	0.48	-1.5
1,554,552	+		GFF1525	0.48	-0.7
1,554,555	-		GFF1525	0.48	-0.2
1,554,560	-		GFF1525	0.49	+1.2
1,554,570	+		GFF1525	0.49	+1.6
1,554,570	+		GFF1525	0.49	-2.1
1,554,570	-		GFF1525	0.49	-0.4
1,554,570	-		GFF1525	0.49	-0.2
1,554,580	+		GFF1525	0.50	+0.7
1,554,580	+		GFF1525	0.50	-0.2
1,554,588	-		GFF1525	0.51	+0.6
1,554,591	+		GFF1525	0.51	-0.3
1,554,599	-		GFF1525	0.52	-1.4
1,554,637	+		GFF1525	0.55	-0.6
1,554,673	+		GFF1525	0.57	-0.3
1,554,686	-		GFF1525	0.58	-1.7
1,554,686	-		GFF1525	0.58	-0.1
1,554,707	+		GFF1525	0.60	-0.7
1,554,712	+		GFF1525	0.60	-1.5
1,554,712	+		GFF1525	0.60	+0.9
1,554,715	-		GFF1525	0.61	+1.3
1,554,720	-		GFF1525	0.61	+0.1
1,554,728	-		GFF1525	0.62	+0.4
1,554,729	+		GFF1525	0.62	-0.6
1,554,730	-		GFF1525	0.62	+0.4
1,554,730	-		GFF1525	0.62	-0.4
1,554,739	+		GFF1525	0.63	-1.8
1,554,744	+		GFF1525	0.63	-0.4
1,554,787	+		GFF1525	0.66	-0.6
1,554,787	+		GFF1525	0.66	-0.3
1,554,795	-		GFF1525	0.67	-0.9
1,554,795	-		GFF1525	0.67	-0.9
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1,555,173	+				+0.6
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1,555,190	+				-1.1
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1,555,198	-				-1.9
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1,555,238	-				+1.4
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1,555,243	+				+0.3
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1,555,253	-				+1.3
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1,555,294	+				-1.1
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1,555,316	+				-1.5
1,555,316	+				-0.9
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1,555,316	+				+0.8
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1,555,324	-				-0.9
1,555,324	-				-1.1
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1,555,324	-				-0.1
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1,555,324	-				-0.9
1,555,326	+				-1.3
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1,555,326	+				-0.9
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1,555,334	-				+0.9
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1,555,334	-				-0.8
1,555,334	-				-1.5
1,555,334	-				-0.3
1,555,334	-				-1.7
1,555,334	-				+0.3
1,555,334	-				-1.1
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1,555,416	+				-0.5
1,555,424	-				-1.2
1,555,424	-				-0.9
1,555,424	-				-0.5
1,555,434	-				-0.9
1,555,463	+				-1.7
1,555,470	+				-0.4
1,555,470	+				-0.7
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1,555,478	-				+0.8
1,555,478	-				+0.8
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1,555,478	-				-1.2
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1,555,504	+				+0.9
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1,555,531	+				+0.8
1,555,538	-				+0.5
1,555,539	-				-1.5
1,555,539	-				+0.4
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1,555,813	+		GFF1526	0.20	-1.1
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1,555,982	+		GFF1526	0.27	-1.8
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1,555,982	+		GFF1526	0.27	-0.8
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