Strain Fitness in Sphingobium sp. HT1-2 around GFF1481

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,505,865	-				-0.9
1,505,867	+				-0.4
1,505,867	+				-1.8
1,505,867	-				-0.5
1,505,867	-				-1.3
1,505,875	+				-0.8
1,505,875	-				-1.4
1,505,875	-				-1.4
1,505,883	-				-0.9
1,505,885	+				-1.3
1,505,900	+				-1.2
1,505,900	+				-0.6
1,505,900	+				-0.1
1,505,900	+				-0.2
1,505,900	+				-0.1
1,505,900	+				-0.9
1,505,900	+				-0.3
1,505,900	+				-1.6
1,505,905	+				-0.2
1,505,905	+				-1.1
1,505,905	+				-0.7
1,505,907	-				-0.7
1,505,908	-				+1.4
1,505,908	-				-0.7
1,505,908	-				-0.2
1,505,908	-				+0.3
1,505,908	-				-0.7
1,505,908	-				+2.2
1,505,910	+				-0.9
1,505,923	-		GFF1480	0.11	-1.5
1,505,929	+		GFF1480	0.12	-0.6
1,505,946	+		GFF1480	0.13	-1.7
1,505,951	+		GFF1480	0.14	-0.2
1,505,966	+		GFF1480	0.16	-0.7
1,506,004	+		GFF1480	0.19	+1.4
1,506,004	+		GFF1480	0.19	+0.8
1,506,012	-		GFF1480	0.20	+1.0
1,506,022	-		GFF1480	0.21	-0.6
1,506,060	+		GFF1480	0.25	-0.0
1,506,073	+		GFF1480	0.27	+1.1
1,506,086	-		GFF1480	0.28	-1.1
1,506,086	-		GFF1480	0.28	+0.1
1,506,086	-		GFF1480	0.28	+0.0
1,506,100	-		GFF1480	0.29	-1.1
1,506,100	-		GFF1480	0.29	+0.7
1,506,115	+		GFF1480	0.31	+0.1
1,506,120	+		GFF1480	0.32	-1.0
1,506,120	+		GFF1480	0.32	-1.0
1,506,128	-		GFF1480	0.32	+0.5
1,506,160	-		GFF1480	0.36	-0.8
1,506,174	+		GFF1480	0.37	-2.0
1,506,174	+		GFF1480	0.37	+1.3
1,506,177	-		GFF1480	0.38	+0.6
1,506,177	-		GFF1480	0.38	-0.3
1,506,179	+		GFF1480	0.38	+0.7
1,506,183	+		GFF1480	0.38	-1.2
1,506,192	-		GFF1480	0.39	-0.5
1,506,194	+		GFF1480	0.39	-0.4
1,506,197	-		GFF1480	0.40	-1.6
1,506,199	+		GFF1480	0.40	-0.6
1,506,199	+		GFF1480	0.40	-1.0
1,506,199	+		GFF1480	0.40	-2.0
1,506,199	+		GFF1480	0.40	-2.0
1,506,199	+		GFF1480	0.40	-1.2
1,506,199	+		GFF1480	0.40	-0.4
1,506,199	+		GFF1480	0.40	-1.8
1,506,199	+		GFF1480	0.40	-0.2
1,506,199	+		GFF1480	0.40	-0.2
1,506,199	+		GFF1480	0.40	-0.8
1,506,202	-		GFF1480	0.40	-0.7
1,506,202	-		GFF1480	0.40	-0.7
1,506,204	+		GFF1480	0.40	-0.8
1,506,207	-		GFF1480	0.41	-1.2
1,506,207	-		GFF1480	0.41	-1.4
1,506,207	-		GFF1480	0.41	-1.0
1,506,209	+		GFF1480	0.41	-1.6
1,506,231	+		GFF1480	0.43	+1.2
1,506,252	-		GFF1480	0.45	+1.9
1,506,254	+		GFF1480	0.46	-0.2
1,506,259	+		GFF1480	0.46	-1.8
1,506,259	+		GFF1480	0.46	+0.2
1,506,259	+		GFF1480	0.46	+0.4
1,506,262	-		GFF1480	0.46	-0.0
1,506,262	-		GFF1480	0.46	+0.4
1,506,264	+		GFF1480	0.47	+0.8
1,506,267	-		GFF1480	0.47	-1.7
1,506,267	-		GFF1480	0.47	+0.1
1,506,272	-		GFF1480	0.47	-1.9
1,506,272	-		GFF1480	0.47	+0.7
1,506,272	-		GFF1480	0.47	-0.5
1,506,290	+		GFF1480	0.49	-1.0
1,506,296	+		GFF1480	0.50	-0.3
1,506,310	-		GFF1480	0.51	+0.8
1,506,310	-		GFF1480	0.51	+0.1
1,506,310	-		GFF1480	0.51	-0.9
1,506,315	-		GFF1480	0.52	-0.4
1,506,334	-		GFF1480	0.54	+0.9
1,506,344	+		GFF1480	0.55	-1.2
1,506,349	+		GFF1480	0.55	-2.1
1,506,349	+		GFF1480	0.55	+1.3
1,506,349	+		GFF1480	0.55	-0.4
1,506,351	+		GFF1480	0.56	-0.4
1,506,351	+		GFF1480	0.56	+1.1
1,506,351	+		GFF1480	0.56	-1.3
1,506,351	+		GFF1480	0.56	-0.6
1,506,351	+		GFF1480	0.56	+0.4
1,506,357	-		GFF1480	0.56	-0.1
1,506,357	-		GFF1480	0.56	-1.0
1,506,357	-		GFF1480	0.56	-1.5
1,506,357	-		GFF1480	0.56	-2.9
1,506,359	-		GFF1480	0.56	-1.2
1,506,361	+		GFF1480	0.57	-1.0
1,506,379	-		GFF1480	0.59	-0.2
1,506,385	-		GFF1480	0.59	-0.2
1,506,391	-		GFF1480	0.60	-1.7
1,506,391	-		GFF1480	0.60	-0.2
1,506,396	-		GFF1480	0.60	-1.2
1,506,398	-		GFF1480	0.61	+0.2
1,506,405	-		GFF1480	0.61	-1.0
1,506,416	+		GFF1480	0.62	-0.0
1,506,416	+		GFF1480	0.62	+1.1
1,506,424	-		GFF1480	0.63	+0.7
1,506,424	-		GFF1480	0.63	+0.2
1,506,475	+		GFF1480	0.69	-1.2
1,506,476	+		GFF1480	0.69	+1.3
1,506,480	+		GFF1480	0.69	-0.9
1,506,498	+		GFF1480	0.71	+0.1
1,506,503	+		GFF1480	0.71	-1.3
1,506,511	-		GFF1480	0.72	-0.7
1,506,516	-		GFF1480	0.73	-1.9
1,506,516	-		GFF1480	0.73	-0.6
1,506,521	+		GFF1480	0.73	-0.7
1,506,521	-		GFF1480	0.73	-0.5
1,506,521	-		GFF1480	0.73	-1.1
1,506,529	-		GFF1480	0.74	-1.6
1,506,531	+		GFF1480	0.74	+0.4
1,506,538	-		GFF1480	0.75	+1.0
1,506,541	+		GFF1480	0.75	-1.5
1,506,543	-		GFF1480	0.76	-0.4
1,506,571	-		GFF1480	0.79	-1.6
1,506,576	+		GFF1480	0.79	+0.8
1,506,578	+		GFF1480	0.79	-0.7
1,506,584	-		GFF1480	0.80	+0.6
1,506,586	-		GFF1480	0.80	-1.5
1,506,586	-		GFF1480	0.80	-1.0
1,506,594	-		GFF1480	0.81	+1.1
1,506,595	+		GFF1480	0.81	-1.4
1,506,601	+		GFF1480	0.82	+0.4
1,506,607	+		GFF1480	0.82	-1.3
1,506,624	-		GFF1480	0.84	+0.6
1,506,629	+		GFF1480	0.85	-0.7
1,506,634	+		GFF1480	0.85	+0.4
1,506,639	+		GFF1480	0.86	-0.2
1,506,639	+		GFF1480	0.86	-1.0
1,506,639	+		GFF1480	0.86	+0.2
1,506,642	+		GFF1480	0.86	-0.5
1,506,642	+		GFF1480	0.86	-0.4
1,506,647	-		GFF1480	0.86	-0.7
1,506,647	-		GFF1480	0.86	+0.3
1,506,649	+		GFF1480	0.87	-0.2
1,506,650	-		GFF1480	0.87	-1.6
1,506,650	-		GFF1480	0.87	+0.2
1,506,662	-		GFF1480	0.88	-1.0
1,506,669	+		GFF1480	0.89	-0.7
1,506,677	-		GFF1480	0.90	-0.6
1,506,678	-		GFF1480	0.90	-0.7
1,506,681	+				-1.0
1,506,697	-				+1.2
1,506,718	+				-0.2
1,506,718	+				-0.5
1,506,737	-				-0.5
1,506,763	+				-0.2
1,506,779	+				+0.8
1,506,779	+				+0.7
1,506,779	+				-1.6
1,506,779	-				-0.8
1,506,786	+				-1.8
1,506,787	-				-0.9
1,506,791	+				-0.4
1,506,791	+				+0.3
1,506,795	-				-0.5
1,506,799	-				-0.4
1,506,806	+				+0.6
1,506,866	+				+0.0
1,506,868	-				+0.6
1,506,869	-				-2.4
1,506,879	+				+1.6
1,506,881	+				+0.2
1,506,911	+				-1.8
1,506,911	+				-0.2
1,506,911	+				+0.7
1,506,993	+		GFF1481	0.19	-1.7
1,506,993	+		GFF1481	0.19	-1.0
1,507,000	-		GFF1481	0.20	+0.2
1,507,001	-		GFF1481	0.20	-0.5
1,507,071	+		GFF1481	0.31	-0.2
1,507,071	+		GFF1481	0.31	-0.9
1,507,071	+		GFF1481	0.31	+0.2
1,507,071	+		GFF1481	0.31	-0.7
1,507,071	+		GFF1481	0.31	+0.4
1,507,079	-		GFF1481	0.32	-0.3
1,507,079	-		GFF1481	0.32	-0.7
1,507,079	-		GFF1481	0.32	-0.7
1,507,118	+		GFF1481	0.37	-0.4
1,507,126	+		GFF1481	0.39	-0.8
1,507,126	+		GFF1481	0.39	-0.2
1,507,126	-		GFF1481	0.39	-1.3
1,507,134	-		GFF1481	0.40	-0.8
1,507,134	-		GFF1481	0.40	-1.3
1,507,139	+		GFF1481	0.41	-0.5
1,507,139	+		GFF1481	0.41	-0.4
1,507,139	+		GFF1481	0.41	+0.8
1,507,139	+		GFF1481	0.41	+0.3
1,507,139	+		GFF1481	0.41	-1.4
1,507,139	+		GFF1481	0.41	-0.8
1,507,139	+		GFF1481	0.41	+0.6
1,507,141	+		GFF1481	0.41	+0.9
1,507,141	+		GFF1481	0.41	+0.6
1,507,141	+		GFF1481	0.41	-0.5
1,507,141	+		GFF1481	0.41	-0.4
1,507,141	+		GFF1481	0.41	-1.4
1,507,147	-		GFF1481	0.42	-1.1
1,507,147	-		GFF1481	0.42	-0.7
1,507,149	-		GFF1481	0.42	+0.2
1,507,153	+		GFF1481	0.43	-1.0
1,507,158	+		GFF1481	0.43	-0.8
1,507,158	+		GFF1481	0.43	+0.0
1,507,163	+		GFF1481	0.44	-1.1
1,507,163	+		GFF1481	0.44	-0.7
1,507,166	-		GFF1481	0.44	-1.6
1,507,168	+		GFF1481	0.45	-1.2
1,507,171	-		GFF1481	0.45	-0.2
1,507,173	+		GFF1481	0.46	+0.7
1,507,173	+		GFF1481	0.46	-0.2
1,507,173	+		GFF1481	0.46	-0.8
1,507,173	+		GFF1481	0.46	+0.7
1,507,181	-		GFF1481	0.47	-0.3
1,507,181	-		GFF1481	0.47	-1.4
1,507,203	+		GFF1481	0.50	-0.6
1,507,203	-		GFF1481	0.50	-0.6
1,507,203	-		GFF1481	0.50	-1.4
1,507,203	-		GFF1481	0.50	+0.4
1,507,211	-		GFF1481	0.51	-0.4
1,507,287	+		GFF1481	0.62	+0.6
1,507,287	+		GFF1481	0.62	-0.8
1,507,287	+		GFF1481	0.62	-1.9
1,507,287	+		GFF1481	0.62	-1.4
1,507,287	+		GFF1481	0.62	-0.8
1,507,287	+		GFF1481	0.62	-0.5
1,507,295	-		GFF1481	0.63	-0.3
1,507,295	-		GFF1481	0.63	+0.6
1,507,295	-		GFF1481	0.63	-0.0
1,507,300	-		GFF1481	0.64	-1.1
1,507,328	+		GFF1481	0.68	-1.7
1,507,328	+		GFF1481	0.68	-0.5
1,507,336	-		GFF1481	0.69	-1.2
1,507,336	-		GFF1481	0.69	+0.2
1,507,336	-		GFF1481	0.69	-1.3
1,507,336	-		GFF1481	0.69	-0.0
1,507,346	+		GFF1481	0.71	-0.2
1,507,346	+		GFF1481	0.71	-1.0
1,507,349	-		GFF1481	0.71	-0.4
1,507,355	+		GFF1481	0.72	+0.8
1,507,369	-		GFF1481	0.74	+0.0
1,507,384	+		GFF1481	0.77	-2.0
1,507,412	+		GFF1481	0.81	-1.4
1,507,412	+		GFF1481	0.81	-1.0
1,507,420	-		GFF1481	0.82	-2.1
1,507,499	+				+1.5
1,507,550	+				-1.4
1,507,571	-				-0.8
1,507,572	+				-0.5
1,507,582	+				+1.2
1,507,611	+		GFF1482	0.12	-2.3
1,507,611	+		GFF1482	0.12	+1.2
1,507,619	-		GFF1482	0.14	-0.5
1,507,619	-		GFF1482	0.14	-1.1
1,507,630	+		GFF1482	0.16	+0.4
1,507,638	-		GFF1482	0.18	-0.6
1,507,638	-		GFF1482	0.18	-0.0
1,507,638	-		GFF1482	0.18	-2.5
1,507,639	-		GFF1482	0.19	-1.6
1,507,674	+		GFF1482	0.27	-1.3
1,507,677	-		GFF1482	0.27	+0.8
1,507,680	-		GFF1482	0.28	-0.3
1,507,682	-		GFF1482	0.29	-1.2
1,507,692	-		GFF1482	0.31	-0.2
1,507,692	-		GFF1482	0.31	+1.1
1,507,707	+		GFF1482	0.35	-0.2
1,507,710	-		GFF1482	0.35	+0.1
1,507,720	-		GFF1482	0.38	-0.6
1,507,720	-		GFF1482	0.38	-1.1
1,507,720	-		GFF1482	0.38	-0.3
1,507,730	-		GFF1482	0.40	+0.5
1,507,740	-		GFF1482	0.42	+0.1
1,507,742	+		GFF1482	0.43	-0.8
1,507,742	+		GFF1482	0.43	-0.5
1,507,761	+		GFF1482	0.47	+1.8
1,507,763	-		GFF1482	0.48	-1.2
1,507,763	-		GFF1482	0.48	-0.7
1,507,767	-		GFF1482	0.49	-0.8
1,507,769	-		GFF1482	0.49	-1.0
1,507,774	+		GFF1482	0.50	+0.2
1,507,774	+		GFF1482	0.50	-1.7
1,507,774	+		GFF1482	0.50	-2.4
1,507,787	-		GFF1482	0.53	-1.2
1,507,816	+		GFF1482	0.60	-0.8
1,507,816	+		GFF1482	0.60	-0.1
1,507,819	+		GFF1482	0.61	+0.6
1,507,819	+		GFF1482	0.61	-0.2
1,507,819	-		GFF1482	0.61	-0.9
1,507,827	-		GFF1482	0.63	-0.4
1,507,827	-		GFF1482	0.63	-2.0
1,507,827	-		GFF1482	0.63	-0.4
1,507,860	-		GFF1482	0.70	-0.3
1,507,894	+		GFF1482	0.78	+1.3
1,507,898	+		GFF1482	0.79	-0.3
1,507,906	-		GFF1482	0.81	-2.0
1,507,906	-		GFF1482	0.81	+0.2
1,507,906	-		GFF1482	0.81	-1.0
1,507,906	-		GFF1482	0.81	-0.9
1,507,942	-		GFF1482	0.90	-0.4
1,507,942	-		GFF1482	0.90	-0.7
1,507,942	-		GFF1482	0.90	-0.5
1,507,948	+				-0.8
1,507,970	+				+0.6
1,507,970	+				-0.2
1,507,970	+				-1.5
1,507,970	+				-1.2
1,507,970	+				-0.1
1,507,970	+				-1.3
1,507,970	+				+0.4
1,507,970	+				-0.9
1,507,975	+				-1.6
1,507,978	-				-0.4
1,507,978	-				-1.5
1,507,978	-				-1.9
1,507,978	-				-0.0
1,507,978	-				-1.7
1,507,978	-				-0.9
1,507,978	-				-0.9
1,507,978	-				-1.7
1,508,028	+				-1.0
1,508,031	+				-0.4
1,508,051	-				-2.3
1,508,086	+				-1.4
1,508,086	+				-0.9
1,508,094	-				-1.8
1,508,094	-				+1.9
1,508,095	-				+0.1
1,508,123	+				-1.6
1,508,133	+				+0.6
1,508,149	-				-0.5
1,508,162	-				-2.4
1,508,169	+				-1.6
1,508,188	+				-1.6
1,508,188	+				-0.7
1,508,188	+				+0.9
1,508,188	+				+0.3
1,508,192	+				-0.3
1,508,195	-		GFF1483	0.10	-2.2
1,508,196	-		GFF1483	0.10	-1.6
1,508,199	+		GFF1483	0.10	-0.1
1,508,203	-		GFF1483	0.11	+0.0
1,508,214	-		GFF1483	0.12	+1.4
1,508,238	+		GFF1483	0.14	-0.6
1,508,246	-		GFF1483	0.14	-1.4
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