Strain Fitness in Sphingobium sp. HT1-2 around GFF1371

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,393,321	+				+0.7
1,393,351	-				+0.1
1,393,351	-				-0.9
1,393,363	+				+2.8
1,393,372	-				+0.3
1,393,391	+		GFF1370	0.11	-1.1
1,393,391	+		GFF1370	0.11	+0.6
1,393,391	+		GFF1370	0.11	+2.1
1,393,391	+		GFF1370	0.11	-1.0
1,393,391	+		GFF1370	0.11	+0.1
1,393,391	+		GFF1370	0.11	-0.0
1,393,391	+		GFF1370	0.11	+0.2
1,393,391	+		GFF1370	0.11	-1.0
1,393,399	-		GFF1370	0.12	+1.1
1,393,399	-		GFF1370	0.12	+0.6
1,393,399	-		GFF1370	0.12	-0.1
1,393,420	+		GFF1370	0.14	-3.0
1,393,461	+		GFF1370	0.18	-0.7
1,393,463	+		GFF1370	0.18	+0.8
1,393,516	-		GFF1370	0.23	-1.1
1,393,537	-		GFF1370	0.25	+0.8
1,393,560	+		GFF1370	0.27	+2.6
1,393,575	+		GFF1370	0.29	+1.1
1,393,583	-		GFF1370	0.30	-0.7
1,393,607	+		GFF1370	0.32	-0.2
1,393,631	+		GFF1370	0.34	+0.4
1,393,637	+		GFF1370	0.35	+0.6
1,393,639	-		GFF1370	0.35	+0.5
1,393,645	-		GFF1370	0.36	+1.9
1,393,645	-		GFF1370	0.36	-0.7
1,393,649	-		GFF1370	0.36	+0.8
1,393,661	-		GFF1370	0.37	-1.8
1,393,754	+		GFF1370	0.46	+0.3
1,393,762	-		GFF1370	0.47	+2.2
1,393,791	-		GFF1370	0.50	-0.4
1,393,830	-		GFF1370	0.54	-0.9
1,393,849	+		GFF1370	0.56	+0.8
1,393,857	-		GFF1370	0.57	+2.2
1,393,857	-		GFF1370	0.57	+0.2
1,393,857	-		GFF1370	0.57	+0.2
1,393,857	-		GFF1370	0.57	-0.5
1,393,857	-		GFF1370	0.57	+0.2
1,393,897	-		GFF1370	0.60	+0.5
1,393,901	+		GFF1370	0.61	-1.7
1,393,902	-		GFF1370	0.61	-0.1
1,393,946	-		GFF1370	0.65	+0.4
1,393,968	+		GFF1370	0.67	+1.0
1,393,993	-		GFF1370	0.70	-0.6
1,393,993	-		GFF1370	0.70	+0.2
1,394,036	+		GFF1370	0.74	+1.1
1,394,041	+		GFF1370	0.75	+0.8
1,394,048	-		GFF1370	0.75	-0.9
1,394,071	-		GFF1370	0.78	-0.5
1,394,086	+		GFF1370	0.79	-0.7
1,394,086	+		GFF1370	0.79	+1.7
1,394,091	+		GFF1370	0.80	-1.2
1,394,108	+		GFF1370	0.81	+0.9
1,394,115	+		GFF1370	0.82	+0.1
1,394,115	+		GFF1370	0.82	-0.2
1,394,121	-		GFF1370	0.82	-0.6
1,394,121	-		GFF1370	0.82	-0.5
1,394,123	-		GFF1370	0.83	+1.3
1,394,131	-		GFF1370	0.83	+0.8
1,394,169	-		GFF1370	0.87	-0.8
1,394,172	+		GFF1370	0.87	-0.3
1,394,184	-		GFF1370	0.89	+0.3
1,394,250	-				-0.9
1,394,283	+				+0.5
1,394,297	-				+0.6
1,394,297	-				+0.5
1,394,320	+				-0.9
1,394,320	+				+1.1
1,394,328	-				-1.0
1,394,328	-				+2.6
1,394,335	-				-0.1
1,394,375	+				-0.8
1,394,376	-				+0.6
1,394,376	-				-0.3
1,394,383	-				-0.2
1,394,392	+				+0.8
1,394,392	+				+0.9
1,394,392	+				+0.2
1,394,392	+				+0.9
1,394,397	+				+0.8
1,394,397	+				+0.5
1,394,400	-				-1.3
1,394,405	+				+0.7
1,394,405	-				-1.3
1,394,405	-				+0.9
1,394,405	-				-0.8
1,394,410	-				+0.8
1,394,412	-				+1.9
1,394,523	+		GFF1371	0.18	+0.6
1,394,523	+		GFF1371	0.18	-0.0
1,394,531	-		GFF1371	0.18	+1.0
1,394,531	-		GFF1371	0.18	-1.5
1,394,531	-		GFF1371	0.18	-1.0
1,394,540	+		GFF1371	0.19	-1.9
1,394,601	-		GFF1371	0.24	+0.0
1,394,611	+		GFF1371	0.25	+1.8
1,394,620	-		GFF1371	0.26	-0.0
1,394,636	-		GFF1371	0.27	+1.0
1,394,636	-		GFF1371	0.27	-0.5
1,394,641	+		GFF1371	0.27	+1.3
1,394,688	-		GFF1371	0.31	+0.8
1,394,688	-		GFF1371	0.31	+0.3
1,394,688	-		GFF1371	0.31	-0.3
1,394,688	-		GFF1371	0.31	-0.2
1,394,693	-		GFF1371	0.32	+0.2
1,394,715	-		GFF1371	0.34	-0.3
1,394,736	+		GFF1371	0.35	-0.8
1,394,774	+		GFF1371	0.38	-1.2
1,394,778	+		GFF1371	0.39	-1.7
1,394,786	-		GFF1371	0.39	-0.2
1,394,793	+		GFF1371	0.40	-1.9
1,394,801	-		GFF1371	0.41	-0.6
1,394,906	+		GFF1371	0.49	-0.0
1,394,907	+		GFF1371	0.49	+0.5
1,394,907	+		GFF1371	0.49	+1.0
1,394,921	+		GFF1371	0.51	+0.7
1,394,921	+		GFF1371	0.51	+0.7
1,394,929	-		GFF1371	0.51	-1.2
1,394,944	-		GFF1371	0.53	+0.6
1,394,973	+		GFF1371	0.55	+0.9
1,394,973	+		GFF1371	0.55	+0.2
1,394,983	+		GFF1371	0.56	-1.8
1,394,983	+		GFF1371	0.56	-0.4
1,395,042	+		GFF1371	0.61	-0.6
1,395,044	-		GFF1371	0.61	-0.6
1,395,060	+		GFF1371	0.62	-1.0
1,395,070	+		GFF1371	0.63	+0.8
1,395,070	+		GFF1371	0.63	+0.8
1,395,070	+		GFF1371	0.63	-0.8
1,395,070	+		GFF1371	0.63	-1.4
1,395,070	+		GFF1371	0.63	-0.4
1,395,078	+		GFF1371	0.64	-0.5
1,395,078	+		GFF1371	0.64	-0.2
1,395,078	-		GFF1371	0.64	+1.8
1,395,078	-		GFF1371	0.64	+2.4
1,395,078	-		GFF1371	0.64	+0.2
1,395,078	-		GFF1371	0.64	+0.1
1,395,078	-		GFF1371	0.64	+0.4
1,395,078	-		GFF1371	0.64	-0.8
1,395,078	-		GFF1371	0.64	-1.8
1,395,078	-		GFF1371	0.64	-1.1
1,395,086	-		GFF1371	0.64	-0.8
1,395,130	-		GFF1371	0.68	-0.8
1,395,192	-		GFF1371	0.73	-0.7
1,395,192	-		GFF1371	0.73	+0.4
1,395,192	-		GFF1371	0.73	-1.4
1,395,288	-		GFF1371	0.81	+0.3
1,395,304	+		GFF1371	0.82	-0.1
1,395,360	-		GFF1371	0.87	-1.2
1,395,360	-		GFF1371	0.87	+0.1
1,395,363	+		GFF1371	0.87	+0.0
1,395,366	-		GFF1371	0.87	-0.7
1,395,366	-		GFF1371	0.87	+1.8
1,395,366	-		GFF1371	0.87	+0.2
1,395,371	-		GFF1371	0.88	-0.8
1,395,393	-		GFF1371	0.90	-0.5
1,395,406	+				-0.6
1,395,416	+				+0.0
1,395,416	+				+0.8
1,395,417	-				+0.4
1,395,419	-				-0.5
1,395,424	-				+0.6
1,395,445	+				+1.5
1,395,460	+				-1.0
1,395,464	+				-0.4
1,395,464	+				+0.5
1,395,491	+				-1.8
1,395,498	-				+0.5
1,395,516	-				+1.2
1,395,516	-				-1.3
1,395,518	+				-0.8
1,395,518	+				+0.3
1,395,518	+				-0.8
1,395,561	-				+1.4
1,395,590	+				+0.2
1,395,598	+		GFF1372	0.10	-1.6
1,395,598	-		GFF1372	0.10	-0.7
1,395,598	-		GFF1372	0.10	-1.5
1,395,601	-		GFF1372	0.11	-0.8
1,395,631	+		GFF1372	0.14	+1.0
1,395,633	-		GFF1372	0.14	-0.5
1,395,649	+		GFF1372	0.16	-0.5
1,395,657	-		GFF1372	0.17	+0.8
1,395,667	-		GFF1372	0.19	-0.2
1,395,700	+		GFF1372	0.23	-0.5
1,395,708	-		GFF1372	0.24	-1.0
1,395,748	+		GFF1372	0.28	-0.3
1,395,787	+		GFF1372	0.33	-0.5
1,395,792	+		GFF1372	0.34	+1.3
1,395,813	+		GFF1372	0.36	-0.0
1,395,816	-		GFF1372	0.37	-0.3
1,395,823	-		GFF1372	0.37	+0.2
1,395,831	+		GFF1372	0.38	-1.2
1,395,831	+		GFF1372	0.38	-0.5
1,395,839	-		GFF1372	0.39	+1.0
1,395,841	+		GFF1372	0.40	-1.0
1,395,841	+		GFF1372	0.40	-0.7
1,395,841	+		GFF1372	0.40	-0.1
1,395,841	-		GFF1372	0.40	-0.2
1,395,849	-		GFF1372	0.41	+1.6
1,395,849	-		GFF1372	0.41	-1.0
1,395,849	-		GFF1372	0.41	+1.3
1,395,853	+		GFF1372	0.41	-0.2
1,395,861	-		GFF1372	0.42	-0.4
1,395,861	-		GFF1372	0.42	-0.6
1,395,888	+		GFF1372	0.45	-0.1
1,395,888	+		GFF1372	0.45	-1.4
1,395,898	+		GFF1372	0.47	+1.1
1,395,899	+		GFF1372	0.47	+0.3
1,395,905	+		GFF1372	0.47	-1.2
1,395,906	-		GFF1372	0.48	+0.1
1,395,913	-		GFF1372	0.48	-1.9
1,395,913	-		GFF1372	0.48	-0.8
1,395,918	-		GFF1372	0.49	-0.3
1,395,930	+		GFF1372	0.50	-1.2
1,395,938	-		GFF1372	0.51	-0.9
1,395,938	-		GFF1372	0.51	-1.2
1,395,938	-		GFF1372	0.51	-0.5
1,395,940	+		GFF1372	0.52	+1.7
1,395,940	+		GFF1372	0.52	+0.5
1,395,940	+		GFF1372	0.52	-0.4
1,395,945	+		GFF1372	0.52	+0.2
1,395,948	-		GFF1372	0.53	+0.2
1,395,948	-		GFF1372	0.53	+1.9
1,395,948	-		GFF1372	0.53	-0.5
1,395,965	+		GFF1372	0.55	-1.3
1,395,973	-		GFF1372	0.56	+2.9
1,395,997	+		GFF1372	0.59	+1.6
1,395,997	-		GFF1372	0.59	-1.3
1,396,009	+		GFF1372	0.60	-1.1
1,396,030	+		GFF1372	0.63	+0.0
1,396,045	+		GFF1372	0.64	+0.0
1,396,048	-		GFF1372	0.65	+0.6
1,396,053	-		GFF1372	0.65	-2.0
1,396,091	+		GFF1372	0.70	-1.0
1,396,096	+		GFF1372	0.71	-0.7
1,396,096	+		GFF1372	0.71	+0.0
1,396,098	-		GFF1372	0.71	+0.8
1,396,104	-		GFF1372	0.72	-0.8
1,396,104	-		GFF1372	0.72	-1.4
1,396,104	-		GFF1372	0.72	-1.9
1,396,104	-		GFF1372	0.72	+0.0
1,396,127	+		GFF1372	0.74	+0.5
1,396,127	+		GFF1372	0.74	+0.5
1,396,127	+		GFF1372	0.74	+0.5
1,396,135	-		GFF1372	0.75	+0.7
1,396,183	-		GFF1372	0.81	+0.4
1,396,216	-		GFF1372	0.85	+0.2
1,396,241	-		GFF1372	0.88	+0.3
1,396,252	+		GFF1372	0.89	-0.1
1,396,373	-				-1.7
1,396,373	-				-1.8
1,396,375	+				+1.6
1,396,375	+				+0.6
1,396,383	-				-1.7
1,396,422	-				-0.5
1,396,422	-				-1.3
1,396,429	-				+1.3
1,396,459	-				+0.5
1,396,459	-				-0.1
1,396,482	+		GFF1373	0.11	-0.4
1,396,482	+		GFF1373	0.11	+1.8
1,396,487	+		GFF1373	0.12	-1.8
1,396,495	-		GFF1373	0.12	-1.2
1,396,499	-		GFF1373	0.13	+1.3