Strain Fitness in Sphingobium sp. HT1-2 around GFF1313

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,341,690	+		GFF1311	0.90	+1.4
1,341,691	-		GFF1311	0.90	+1.3
1,341,691	-		GFF1311	0.90	+0.5
1,341,692	-		GFF1311	0.90	-1.8
1,341,699	-				-0.8
1,341,718	+				-0.3
1,341,723	+				-1.0
1,341,723	+				-1.6
1,341,731	-				-0.2
1,341,752	+				+0.6
1,341,760	-				+1.2
1,341,776	+				-1.0
1,341,776	+				-1.0
1,341,794	-				-1.3
1,341,794	-				-1.2
1,341,809	+				-0.3
1,341,817	-				+0.3
1,341,817	-				-0.6
1,341,823	+				+0.1
1,341,829	+				+0.0
1,341,831	-				-0.5
1,341,831	-				+0.3
1,341,832	-				-1.7
1,341,837	-				+0.1
1,341,865	+				-2.0
1,341,865	+				+1.4
1,341,865	+				-0.4
1,341,873	-				+1.3
1,341,873	-				+0.8
1,341,873	-				-0.3
1,341,873	-				-0.9
1,341,886	+				-0.6
1,341,886	+				-1.0
1,341,886	+				-0.3
1,341,886	-				+0.2
1,341,890	+				-2.2
1,341,890	+				+0.5
1,341,890	+				-0.3
1,341,890	+				-0.2
1,341,894	-				+1.1
1,341,900	+				-1.1
1,341,900	+				-0.4
1,341,910	+				-0.4
1,341,913	-				+1.5
1,341,924	+				-0.8
1,341,940	-				-1.0
1,341,947	-				-0.7
1,341,955	-				-1.0
1,341,964	+				+0.3
1,341,971	-				-0.6
1,341,972	-				-1.4
1,342,041	-				-0.8
1,342,041	-				+1.7
1,342,075	+				-1.4
1,342,075	+				-1.1
1,342,076	-				-0.6
1,342,157	+		GFF1312	0.10	-0.7
1,342,169	-		GFF1312	0.12	-0.7
1,342,202	+		GFF1312	0.18	+0.0
1,342,207	+		GFF1312	0.19	-0.2
1,342,208	+		GFF1312	0.19	+0.8
1,342,216	+		GFF1312	0.20	-0.6
1,342,216	-		GFF1312	0.20	-0.3
1,342,229	+		GFF1312	0.22	-1.5
1,342,237	-		GFF1312	0.24	+1.5
1,342,281	+		GFF1312	0.31	+0.3
1,342,281	+		GFF1312	0.31	-0.0
1,342,286	-		GFF1312	0.32	-1.2
1,342,308	-		GFF1312	0.36	+0.2
1,342,312	+		GFF1312	0.36	-1.1
1,342,365	+		GFF1312	0.45	+0.8
1,342,373	-		GFF1312	0.47	-0.4
1,342,445	+		GFF1312	0.59	+0.6
1,342,448	-		GFF1312	0.60	-0.6
1,342,479	+		GFF1312	0.65	+0.3
1,342,479	+		GFF1312	0.65	-1.7
1,342,487	-		GFF1312	0.66	-0.6
1,342,487	-		GFF1312	0.66	-0.6
1,342,495	+		GFF1312	0.68	+1.2
1,342,536	+		GFF1312	0.74	+0.8
1,342,536	+		GFF1312	0.74	-0.5
1,342,544	-		GFF1312	0.76	-0.1
1,342,559	+		GFF1312	0.78	-0.0
1,342,559	+		GFF1312	0.78	+0.3
1,342,565	+		GFF1312	0.79	-0.1
1,342,565	+		GFF1312	0.79	+0.3
1,342,566	+		GFF1312	0.80	+2.0
1,342,567	-		GFF1312	0.80	+0.1
1,342,567	-		GFF1312	0.80	+1.9
1,342,567	-		GFF1312	0.80	-0.7
1,342,573	-		GFF1312	0.81	-1.1
1,342,595	+		GFF1312	0.85	-0.2
1,342,603	-		GFF1312	0.86	+0.5
1,342,603	-		GFF1312	0.86	-0.2
1,342,610	-		GFF1312	0.87	+0.5
1,342,615	+		GFF1312	0.88	+0.8
1,342,637	+				+0.4
1,342,637	+				+1.3
1,342,637	+				-2.7
1,342,637	+				-0.8
1,342,637	+				-0.6
1,342,637	+				-2.0
1,342,642	+				-0.3
1,342,645	-				-0.7
1,342,645	-				+0.4
1,342,645	-				-0.5
1,342,645	-				-0.5
1,342,645	-				-0.3
1,342,645	-				-2.0
1,342,645	-				-0.9
1,342,645	-				+0.4
1,342,645	-				+1.4
1,342,645	-				-0.3
1,342,645	-				-1.7
1,342,657	+				+1.3
1,342,658	+				+0.1
1,342,658	+				-0.3
1,342,658	+				+0.4
1,342,667	+				-0.7
1,342,678	+				-0.8
1,342,700	+				+0.6
1,342,728	+				-0.1
1,342,728	+				-2.0
1,342,736	-				-0.1
1,342,736	-				-1.8
1,342,738	+				-1.2
1,342,738	+				-1.0
1,342,738	+				+0.2
1,342,738	+				-0.6
1,342,738	+				+0.5
1,342,746	-				+0.2
1,342,746	-				-1.4
1,342,750	+				-1.6
1,342,750	+				+0.4
1,342,755	+				+0.6
1,342,755	+				-0.3
1,342,758	+				-1.5
1,342,758	+				-0.3
1,342,758	-				+1.1
1,342,763	+		GFF1313	0.10	-0.9
1,342,763	+		GFF1313	0.10	-1.6
1,342,763	-		GFF1313	0.10	-1.7
1,342,766	-		GFF1313	0.10	+0.5
1,342,771	-		GFF1313	0.11	+0.5
1,342,771	-		GFF1313	0.11	+1.2
1,342,790	+		GFF1313	0.13	-2.3
1,342,793	-		GFF1313	0.14	+1.5
1,342,793	-		GFF1313	0.14	+0.6
1,342,813	-		GFF1313	0.16	-0.1
1,342,813	-		GFF1313	0.16	+0.8
1,342,827	-		GFF1313	0.18	-1.6
1,342,831	+		GFF1313	0.19	+0.0
1,342,831	+		GFF1313	0.19	-0.5
1,342,840	+		GFF1313	0.20	-1.0
1,342,847	-		GFF1313	0.21	-1.4
1,342,847	-		GFF1313	0.21	-0.8
1,342,874	+		GFF1313	0.24	+0.7
1,342,896	+		GFF1313	0.27	-1.2
1,342,902	-		GFF1313	0.28	-1.3
1,342,904	-		GFF1313	0.28	-1.5
1,342,909	+		GFF1313	0.29	-1.0
1,342,909	+		GFF1313	0.29	+0.1
1,342,917	-		GFF1313	0.30	+1.2
1,342,917	-		GFF1313	0.30	-0.2
1,342,919	+		GFF1313	0.30	-0.2
1,342,953	+		GFF1313	0.35	+1.7
1,342,953	+		GFF1313	0.35	+0.6
1,342,953	+		GFF1313	0.35	-0.9
1,342,953	+		GFF1313	0.35	-0.0
1,342,953	+		GFF1313	0.35	-0.8
1,342,953	+		GFF1313	0.35	-0.8
1,342,953	+		GFF1313	0.35	+1.1
1,342,953	+		GFF1313	0.35	-1.2
1,342,953	+		GFF1313	0.35	-0.4
1,342,953	+		GFF1313	0.35	-1.5
1,342,953	+		GFF1313	0.35	-1.6
1,342,953	+		GFF1313	0.35	+0.0
1,342,953	+		GFF1313	0.35	+1.3
1,342,953	+		GFF1313	0.35	-0.9
1,342,953	+		GFF1313	0.35	-1.1
1,342,961	-		GFF1313	0.36	+1.6
1,342,961	-		GFF1313	0.36	+0.6
1,342,961	-		GFF1313	0.36	-1.3
1,342,961	-		GFF1313	0.36	+0.0
1,342,961	-		GFF1313	0.36	-1.5
1,342,961	-		GFF1313	0.36	-0.0
1,342,961	-		GFF1313	0.36	-0.5
1,342,961	-		GFF1313	0.36	-1.3
1,342,961	-		GFF1313	0.36	-1.4
1,342,961	-		GFF1313	0.36	-1.4
1,342,961	-		GFF1313	0.36	-0.7
1,342,961	-		GFF1313	0.36	+0.6
1,342,961	-		GFF1313	0.36	+0.6
1,342,961	-		GFF1313	0.36	-0.8
1,342,961	-		GFF1313	0.36	-0.3
1,342,961	-		GFF1313	0.36	-0.4
1,342,961	-		GFF1313	0.36	-1.8
1,342,961	-		GFF1313	0.36	-0.1
1,342,961	-		GFF1313	0.36	+0.6
1,342,961	-		GFF1313	0.36	-1.5
1,342,961	-		GFF1313	0.36	+1.2
1,342,963	+		GFF1313	0.36	+0.4
1,342,963	+		GFF1313	0.36	-1.9
1,342,963	+		GFF1313	0.36	-0.3
1,342,965	+		GFF1313	0.36	-1.2
1,342,971	-		GFF1313	0.37	+0.6
1,342,971	-		GFF1313	0.37	-0.5
1,342,971	-		GFF1313	0.37	-1.5
1,342,971	-		GFF1313	0.37	-0.4
1,342,973	-		GFF1313	0.37	-1.2
1,342,978	+		GFF1313	0.38	+0.4
1,342,988	-		GFF1313	0.39	+1.0
1,343,005	-		GFF1313	0.41	-0.4
1,343,019	+		GFF1313	0.43	-1.2
1,343,046	+		GFF1313	0.47	-1.0
1,343,046	+		GFF1313	0.47	-1.6
1,343,046	+		GFF1313	0.47	+1.6
1,343,047	-		GFF1313	0.47	-1.5
1,343,054	-		GFF1313	0.48	+0.1
1,343,054	-		GFF1313	0.48	+0.3
1,343,054	-		GFF1313	0.48	+0.7
1,343,056	+		GFF1313	0.48	-0.7
1,343,057	+		GFF1313	0.48	+0.6
1,343,065	-		GFF1313	0.49	+0.4
1,343,126	-		GFF1313	0.57	-1.9
1,343,140	+		GFF1313	0.59	+0.0
1,343,147	+		GFF1313	0.60	-0.0
1,343,149	-		GFF1313	0.60	-0.5
1,343,155	+		GFF1313	0.61	-0.5
1,343,157	+		GFF1313	0.61	-1.6
1,343,183	+		GFF1313	0.64	-0.8
1,343,183	+		GFF1313	0.64	-0.2
1,343,184	-		GFF1313	0.65	+0.4
1,343,186	-		GFF1313	0.65	-0.4
1,343,186	-		GFF1313	0.65	-0.5
1,343,193	+		GFF1313	0.66	-0.6
1,343,196	-		GFF1313	0.66	-0.6
1,343,216	-		GFF1313	0.69	-1.5
1,343,230	-		GFF1313	0.71	-0.3
1,343,244	+		GFF1313	0.72	-0.2
1,343,255	+		GFF1313	0.74	+0.8
1,343,263	-		GFF1313	0.75	-0.6
1,343,263	-		GFF1313	0.75	-0.4
1,343,270	+		GFF1313	0.76	-0.4
1,343,270	+		GFF1313	0.76	-0.2
1,343,270	+		GFF1313	0.76	-0.5
1,343,271	-		GFF1313	0.76	+0.6
1,343,273	-		GFF1313	0.76	-0.8
1,343,278	-		GFF1313	0.77	+0.6
1,343,278	-		GFF1313	0.77	-0.3
1,343,285	+		GFF1313	0.78	-2.2
1,343,288	-		GFF1313	0.78	-0.2
1,343,293	+		GFF1313	0.79	+0.0
1,343,293	+		GFF1313	0.79	-0.2
1,343,293	-		GFF1313	0.79	-0.9
1,343,293	-		GFF1313	0.79	+2.2
1,343,295	+		GFF1313	0.79	-1.4
1,343,301	-		GFF1313	0.80	-0.2
1,343,301	-		GFF1313	0.80	+0.3
1,343,301	-		GFF1313	0.80	+0.1
1,343,305	+		GFF1313	0.80	-0.2
1,343,305	+		GFF1313	0.80	-1.7
1,343,313	-		GFF1313	0.81	-0.7
1,343,313	-		GFF1313	0.81	-2.6
1,343,331	+		GFF1313	0.84	-0.9
1,343,342	+		GFF1313	0.85	-0.3
1,343,351	+		GFF1313	0.86	-1.9
1,343,352	+		GFF1313	0.86	+0.5
1,343,352	+		GFF1313	0.86	-1.0
1,343,352	+		GFF1313	0.86	-0.5
1,343,352	+		GFF1313	0.86	-0.8
1,343,355	-		GFF1313	0.87	-1.2
1,343,360	-		GFF1313	0.87	-0.4
1,343,360	-		GFF1313	0.87	+0.5
1,343,365	-		GFF1313	0.88	-0.8
1,343,385	+				+0.3
1,343,394	+				+1.4
1,343,402	-				+1.1
1,343,402	-				-0.1
1,343,427	+				+0.9
1,343,435	-				+0.6
1,343,444	+				-0.3
1,343,447	-				-0.2
1,343,464	+				-0.4
1,343,464	+				-0.2
1,343,465	+				-0.3
1,343,465	+				+0.5
1,343,470	+				+0.6
1,343,472	-				-1.6
1,343,472	-				+0.2
1,343,473	-				+1.2
1,343,500	-		GFF1314	0.13	+0.5
1,343,553	+		GFF1314	0.28	-0.8
1,343,566	-		GFF1314	0.32	-0.3
1,343,593	+		GFF1314	0.40	+0.1
1,343,614	+		GFF1314	0.45	+1.2
1,343,621	-		GFF1314	0.47	+0.7
1,343,623	+		GFF1314	0.48	-0.4
1,343,624	-		GFF1314	0.48	+0.1
1,343,629	-		GFF1314	0.50	-1.2
1,343,661	+		GFF1314	0.59	-1.4
1,343,671	+		GFF1314	0.62	-0.4
1,343,679	+		GFF1314	0.64	+0.8
1,343,687	-		GFF1314	0.66	-1.4
1,343,691	-		GFF1314	0.67	+0.9
1,343,691	-		GFF1314	0.67	-0.8
1,343,692	-		GFF1314	0.68	-0.3
1,343,693	+		GFF1314	0.68	-0.1
1,343,736	+		GFF1314	0.80	-1.8
1,343,779	-				+0.2
1,343,808	+				+0.3
1,343,812	+				-1.2
1,343,812	+				-0.3
1,343,812	+				-0.7
1,343,816	-				-1.0
1,343,820	-				+0.8
1,343,820	-				-0.2
1,343,820	-				+0.5
1,343,820	-				-0.7
1,343,820	-				+1.0
1,343,840	+				+0.8
1,343,848	-				-1.2
1,343,848	-				+0.2
1,343,851	+				-0.9
1,343,859	-				-0.7
1,343,859	-				-0.2
1,343,859	-				-0.6
1,343,870	+				-0.2
1,343,871	-				-0.9
1,343,878	-				+0.2
1,343,878	-				+0.1
1,343,878	-				-0.7
1,343,893	-				+1.4
1,343,896	-				+0.2
1,343,947	-				-1.6
1,343,967	-				-0.3
1,343,973	+				-0.1
1,343,992	-				-0.5
1,343,992	-				+1.5
1,344,035	-				+0.1
1,344,083	+				-0.6
1,344,091	-				+1.3
1,344,104	+				-0.9
1,344,112	-				+1.2
1,344,112	-				-1.2
1,344,112	-				-0.2
1,344,112	-				+0.3
1,344,117	-				-0.4
1,344,163	+				-1.8
1,344,195	+				-0.4
1,344,256	+		GFF1315	0.11	+0.0
1,344,256	+		GFF1315	0.11	-0.5
1,344,256	+		GFF1315	0.11	-1.4
1,344,258	+		GFF1315	0.11	-0.4
1,344,271	+		GFF1315	0.12	-0.8
1,344,289	-		GFF1315	0.12	+0.8
1,344,295	+		GFF1315	0.12	+0.7
1,344,315	+		GFF1315	0.13	-2.5
1,344,319	+		GFF1315	0.13	-0.0
1,344,319	+		GFF1315	0.13	+0.3
1,344,320	-		GFF1315	0.13	-0.2
1,344,327	-		GFF1315	0.13	-2.3
1,344,327	-		GFF1315	0.13	-1.3
1,344,361	-		GFF1315	0.14	+2.4
1,344,362	+		GFF1315	0.14	-0.2
1,344,362	+		GFF1315	0.14	-0.2
1,344,370	-		GFF1315	0.14	-1.4
1,344,370	-		GFF1315	0.14	-0.9
1,344,372	+		GFF1315	0.14	-0.5
1,344,372	+		GFF1315	0.14	+0.9
1,344,372	+		GFF1315	0.14	-1.5
1,344,372	+		GFF1315	0.14	+0.6
1,344,372	+		GFF1315	0.14	-0.4
1,344,372	+		GFF1315	0.14	+0.4
1,344,377	+		GFF1315	0.14	-0.0
1,344,380	-		GFF1315	0.15	-0.6
1,344,380	-		GFF1315	0.15	-0.9
1,344,380	-		GFF1315	0.15	-1.1
1,344,387	-		GFF1315	0.15	-1.2
1,344,395	-		GFF1315	0.15	-1.3
1,344,401	+		GFF1315	0.15	-0.3
1,344,401	+		GFF1315	0.15	+1.3
1,344,402	-		GFF1315	0.15	-0.1
1,344,409	-		GFF1315	0.15	+0.5
1,344,409	-		GFF1315	0.15	+0.1
1,344,415	+		GFF1315	0.15	+0.7
1,344,419	+		GFF1315	0.16	-0.2
1,344,423	+		GFF1315	0.16	-1.1
1,344,427	-		GFF1315	0.16	-1.0
1,344,427	-		GFF1315	0.16	-0.9
1,344,436	+		GFF1315	0.16	-1.2
1,344,436	-		GFF1315	0.16	-0.6
1,344,439	-		GFF1315	0.16	-1.0
1,344,441	-		GFF1315	0.16	-0.3
1,344,441	-		GFF1315	0.16	-2.3
1,344,445	+		GFF1315	0.16	-1.2
1,344,445	+		GFF1315	0.16	-1.0
1,344,453	-		GFF1315	0.16	+0.3
1,344,455	+		GFF1315	0.16	+0.3