Strain Fitness in Sphingobium sp. HT1-2 around GFF1265

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,293,087	-				+0.5
1,293,157	-		GFF1264	0.15	-0.8
1,293,171	+		GFF1264	0.16	-0.3
1,293,182	+		GFF1264	0.17	-0.0
1,293,192	+		GFF1264	0.18	-1.1
1,293,200	-		GFF1264	0.19	+0.3
1,293,209	+		GFF1264	0.19	+0.5
1,293,226	-		GFF1264	0.21	-0.4
1,293,228	+		GFF1264	0.21	-0.1
1,293,234	-		GFF1264	0.22	+0.6
1,293,241	+		GFF1264	0.22	+1.0
1,293,241	+		GFF1264	0.22	+0.2
1,293,241	+		GFF1264	0.22	+1.8
1,293,244	-		GFF1264	0.23	+0.5
1,293,249	-		GFF1264	0.23	-0.5
1,293,249	-		GFF1264	0.23	-0.6
1,293,254	-		GFF1264	0.23	-0.2
1,293,261	+		GFF1264	0.24	+0.1
1,293,266	+		GFF1264	0.25	-0.6
1,293,282	+		GFF1264	0.26	-1.3
1,293,289	-		GFF1264	0.27	+0.2
1,293,292	+		GFF1264	0.27	-2.1
1,293,301	+		GFF1264	0.28	-1.3
1,293,309	-		GFF1264	0.29	-0.2
1,293,309	-		GFF1264	0.29	-0.4
1,293,321	+		GFF1264	0.30	-0.3
1,293,321	+		GFF1264	0.30	+0.2
1,293,329	-		GFF1264	0.30	-0.3
1,293,329	-		GFF1264	0.30	-0.8
1,293,329	-		GFF1264	0.30	-0.3
1,293,331	+		GFF1264	0.31	-1.3
1,293,331	+		GFF1264	0.31	-1.1
1,293,331	+		GFF1264	0.31	-0.2
1,293,339	-		GFF1264	0.31	-1.5
1,293,341	-		GFF1264	0.31	-1.1
1,293,359	+		GFF1264	0.33	-1.0
1,293,359	+		GFF1264	0.33	-0.1
1,293,359	+		GFF1264	0.33	-0.4
1,293,367	-		GFF1264	0.34	-1.1
1,293,367	-		GFF1264	0.34	+0.5
1,293,367	-		GFF1264	0.34	-0.9
1,293,374	-		GFF1264	0.35	-1.9
1,293,374	-		GFF1264	0.35	+1.0
1,293,377	-		GFF1264	0.35	-1.1
1,293,408	-		GFF1264	0.38	+0.0
1,293,414	+		GFF1264	0.38	-0.5
1,293,414	+		GFF1264	0.38	-0.9
1,293,414	+		GFF1264	0.38	+0.8
1,293,422	-		GFF1264	0.39	-2.0
1,293,422	-		GFF1264	0.39	+0.6
1,293,422	-		GFF1264	0.39	-0.9
1,293,422	-		GFF1264	0.39	+1.7
1,293,422	-		GFF1264	0.39	-1.0
1,293,436	+		GFF1264	0.40	-1.4
1,293,444	-		GFF1264	0.41	+0.7
1,293,444	-		GFF1264	0.41	-1.6
1,293,455	+		GFF1264	0.42	-1.3
1,293,463	-		GFF1264	0.43	-0.1
1,293,478	-		GFF1264	0.44	+0.0
1,293,496	+		GFF1264	0.46	-1.8
1,293,504	-		GFF1264	0.47	+0.5
1,293,520	+		GFF1264	0.48	-0.7
1,293,520	+		GFF1264	0.48	-1.7
1,293,533	-		GFF1264	0.49	+0.0
1,293,557	-		GFF1264	0.51	-0.8
1,293,565	+		GFF1264	0.52	-1.3
1,293,565	+		GFF1264	0.52	-0.0
1,293,570	+		GFF1264	0.53	-1.3
1,293,570	+		GFF1264	0.53	-1.6
1,293,573	-		GFF1264	0.53	-1.6
1,293,573	-		GFF1264	0.53	-1.4
1,293,573	-		GFF1264	0.53	-0.4
1,293,575	+		GFF1264	0.53	+0.5
1,293,575	+		GFF1264	0.53	+0.6
1,293,575	+		GFF1264	0.53	-2.0
1,293,575	+		GFF1264	0.53	-0.3
1,293,583	-		GFF1264	0.54	-0.7
1,293,583	-		GFF1264	0.54	+0.5
1,293,584	+		GFF1264	0.54	+1.3
1,293,584	+		GFF1264	0.54	+0.3
1,293,589	+		GFF1264	0.54	+0.5
1,293,592	-		GFF1264	0.55	+0.0
1,293,592	-		GFF1264	0.55	+0.8
1,293,592	-		GFF1264	0.55	-0.7
1,293,594	+		GFF1264	0.55	-0.9
1,293,594	+		GFF1264	0.55	-1.4
1,293,602	-		GFF1264	0.56	-0.4
1,293,602	-		GFF1264	0.56	+0.4
1,293,602	-		GFF1264	0.56	-0.7
1,293,611	-		GFF1264	0.56	-1.4
1,293,625	-		GFF1264	0.58	-0.9
1,293,644	+		GFF1264	0.59	+0.4
1,293,644	+		GFF1264	0.59	-1.3
1,293,644	+		GFF1264	0.59	-2.0
1,293,647	-		GFF1264	0.60	-1.4
1,293,651	+		GFF1264	0.60	+0.2
1,293,651	+		GFF1264	0.60	-1.7
1,293,651	+		GFF1264	0.60	-0.2
1,293,651	+		GFF1264	0.60	+0.2
1,293,651	+		GFF1264	0.60	-1.1
1,293,652	-		GFF1264	0.60	-0.8
1,293,652	-		GFF1264	0.60	-0.4
1,293,652	-		GFF1264	0.60	-0.6
1,293,659	-		GFF1264	0.61	-1.2
1,293,711	+		GFF1264	0.66	+0.8
1,293,719	-		GFF1264	0.66	-0.4
1,293,719	-		GFF1264	0.66	-0.5
1,293,719	-		GFF1264	0.66	-1.0
1,293,721	+		GFF1264	0.66	-1.6
1,293,729	-		GFF1264	0.67	-0.2
1,293,736	+		GFF1264	0.68	-0.1
1,293,759	-		GFF1264	0.70	+0.0
1,293,766	+		GFF1264	0.71	-0.6
1,293,766	+		GFF1264	0.71	-1.9
1,293,767	-		GFF1264	0.71	+1.7
1,293,774	-		GFF1264	0.71	+0.0
1,293,774	-		GFF1264	0.71	-1.3
1,293,806	+		GFF1264	0.74	+0.7
1,293,806	+		GFF1264	0.74	-1.3
1,293,814	-		GFF1264	0.75	+0.8
1,293,814	-		GFF1264	0.75	-1.1
1,293,814	-		GFF1264	0.75	+0.9
1,293,814	-		GFF1264	0.75	-1.0
1,293,825	+		GFF1264	0.76	-0.4
1,293,825	+		GFF1264	0.76	+1.0
1,293,825	+		GFF1264	0.76	-1.6
1,293,825	+		GFF1264	0.76	-1.1
1,293,825	+		GFF1264	0.76	+0.9
1,293,830	+		GFF1264	0.77	-0.6
1,293,831	+		GFF1264	0.77	+0.9
1,293,833	-		GFF1264	0.77	+1.0
1,293,833	-		GFF1264	0.77	+1.3
1,293,833	-		GFF1264	0.77	+1.4
1,293,833	-		GFF1264	0.77	-1.8
1,293,833	-		GFF1264	0.77	-1.3
1,293,833	-		GFF1264	0.77	-0.8
1,293,841	+		GFF1264	0.78	-0.3
1,293,849	+		GFF1264	0.78	-1.7
1,293,867	+		GFF1264	0.80	+1.3
1,293,867	-		GFF1264	0.80	-0.4
1,293,884	+		GFF1264	0.81	-0.5
1,293,884	+		GFF1264	0.81	-0.3
1,293,892	-		GFF1264	0.82	-1.5
1,293,922	-		GFF1264	0.85	+0.5
1,293,938	-		GFF1264	0.86	+1.0
1,293,962	+		GFF1264	0.89	-0.1
1,293,966	-		GFF1264	0.89	-0.5
1,293,971	+		GFF1264	0.90	-0.5
1,293,987	-				-0.7
1,293,990	+				+1.9
1,293,990	+				-2.6
1,293,990	+				+0.0
1,293,990	+				+0.7
1,293,990	+				-2.9
1,293,998	-				-0.8
1,293,998	-				+0.3
1,294,032	-				-1.0
1,294,046	+				+0.9
1,294,066	+				-2.7
1,294,066	+				-0.9
1,294,066	+				-1.5
1,294,074	-				-0.5
1,294,074	-				+0.5
1,294,087	-				-0.7
1,294,088	+				+0.1
1,294,093	+				-0.8
1,294,132	-				+0.4
1,294,143	-				-1.4
1,294,169	+				-0.0
1,294,177	-				+1.8
1,294,187	-		GFF1265	0.11	+0.9
1,294,187	-		GFF1265	0.11	+0.4
1,294,207	-		GFF1265	0.13	-1.4
1,294,222	+		GFF1265	0.15	-0.2
1,294,233	+		GFF1265	0.16	-1.2
1,294,239	-		GFF1265	0.17	+1.4
1,294,265	-		GFF1265	0.19	-0.8
1,294,266	+		GFF1265	0.19	-0.9
1,294,266	+		GFF1265	0.19	-0.5
1,294,266	+		GFF1265	0.19	-0.2
1,294,274	-		GFF1265	0.20	+0.4
1,294,274	-		GFF1265	0.20	+0.5
1,294,274	-		GFF1265	0.20	-0.2
1,294,276	+		GFF1265	0.21	+0.4
1,294,284	-		GFF1265	0.21	-1.7
1,294,291	-		GFF1265	0.22	-0.5
1,294,297	-		GFF1265	0.23	-1.1
1,294,301	-		GFF1265	0.23	-0.5
1,294,304	+		GFF1265	0.24	-0.5
1,294,304	+		GFF1265	0.24	-0.1
1,294,304	+		GFF1265	0.24	-0.4
1,294,311	+		GFF1265	0.24	-0.4
1,294,312	-		GFF1265	0.24	-1.1
1,294,333	+		GFF1265	0.27	+0.5
1,294,343	-		GFF1265	0.28	-1.6
1,294,360	+		GFF1265	0.29	-2.6
1,294,371	-		GFF1265	0.31	-1.1
1,294,371	-		GFF1265	0.31	-0.7
1,294,420	-		GFF1265	0.36	-0.5
1,294,423	+		GFF1265	0.36	-1.6
1,294,423	+		GFF1265	0.36	-0.3
1,294,423	+		GFF1265	0.36	-0.5
1,294,423	+		GFF1265	0.36	-1.4
1,294,423	+		GFF1265	0.36	-2.0
1,294,423	+		GFF1265	0.36	+0.3
1,294,423	+		GFF1265	0.36	+0.1
1,294,423	+		GFF1265	0.36	-0.7
1,294,423	+		GFF1265	0.36	+0.3
1,294,423	+		GFF1265	0.36	+0.7
1,294,423	+		GFF1265	0.36	-1.5
1,294,431	-		GFF1265	0.37	+0.3
1,294,431	-		GFF1265	0.37	-2.3
1,294,431	-		GFF1265	0.37	-1.4
1,294,431	-		GFF1265	0.37	+0.8
1,294,431	-		GFF1265	0.37	-1.0
1,294,431	-		GFF1265	0.37	-1.9
1,294,431	-		GFF1265	0.37	-0.3
1,294,431	-		GFF1265	0.37	-0.3
1,294,431	-		GFF1265	0.37	+0.8
1,294,431	-		GFF1265	0.37	-1.0
1,294,431	-		GFF1265	0.37	+0.9
1,294,431	-		GFF1265	0.37	-0.3
1,294,433	+		GFF1265	0.37	-1.5
1,294,433	+		GFF1265	0.37	-1.0
1,294,433	-		GFF1265	0.37	-0.7
1,294,441	-		GFF1265	0.38	-0.1
1,294,441	-		GFF1265	0.38	-1.4
1,294,443	+		GFF1265	0.38	-0.6
1,294,467	-		GFF1265	0.41	-0.4
1,294,495	+		GFF1265	0.44	-0.4
1,294,505	+		GFF1265	0.45	-0.2
1,294,513	-		GFF1265	0.46	+0.2
1,294,519	+		GFF1265	0.46	+0.1
1,294,527	-		GFF1265	0.47	-0.2
1,294,542	+		GFF1265	0.49	-1.2
1,294,542	+		GFF1265	0.49	-0.1
1,294,557	+		GFF1265	0.51	-1.5
1,294,572	-		GFF1265	0.52	-0.1
1,294,600	+		GFF1265	0.55	+0.4
1,294,621	+		GFF1265	0.57	+0.5
1,294,621	+		GFF1265	0.57	+0.9
1,294,625	+		GFF1265	0.58	-2.0
1,294,625	+		GFF1265	0.58	-0.4
1,294,629	-		GFF1265	0.58	+1.0
1,294,633	-		GFF1265	0.59	-0.7
1,294,660	+		GFF1265	0.62	-0.1
1,294,665	+		GFF1265	0.62	-0.3
1,294,678	+		GFF1265	0.63	-1.3
1,294,699	+		GFF1265	0.66	-2.2
1,294,707	-		GFF1265	0.67	+0.3
1,294,752	+		GFF1265	0.71	-0.5
1,294,760	-		GFF1265	0.72	+1.4
1,294,760	-		GFF1265	0.72	-1.3
1,294,763	+		GFF1265	0.73	-1.1
1,294,763	+		GFF1265	0.73	+0.7
1,294,763	+		GFF1265	0.73	-0.1
1,294,763	+		GFF1265	0.73	+0.3
1,294,763	+		GFF1265	0.73	-0.1
1,294,763	+		GFF1265	0.73	+0.2
1,294,763	+		GFF1265	0.73	-0.8
1,294,771	-		GFF1265	0.73	-0.9
1,294,771	-		GFF1265	0.73	+1.3
1,294,771	-		GFF1265	0.73	-1.1
1,294,771	-		GFF1265	0.73	+0.7
1,294,771	-		GFF1265	0.73	-0.6
1,294,771	-		GFF1265	0.73	-0.3
1,294,771	-		GFF1265	0.73	+0.5
1,294,776	-		GFF1265	0.74	-2.8
1,294,781	-		GFF1265	0.74	-0.3
1,294,793	+		GFF1265	0.76	+0.3
1,294,801	-		GFF1265	0.77	-1.3
1,294,801	-		GFF1265	0.77	-1.7
1,294,801	-		GFF1265	0.77	-0.1
1,294,801	-		GFF1265	0.77	-0.3
1,294,844	+		GFF1265	0.81	-2.1
1,294,844	+		GFF1265	0.81	-1.8
1,294,844	+		GFF1265	0.81	+1.1
1,294,844	+		GFF1265	0.81	-1.4
1,294,844	+		GFF1265	0.81	+0.2
1,294,844	+		GFF1265	0.81	-0.4
1,294,844	+		GFF1265	0.81	-1.7
1,294,844	+		GFF1265	0.81	-0.2
1,294,844	+		GFF1265	0.81	-1.1
1,294,844	+		GFF1265	0.81	+0.1
1,294,844	+		GFF1265	0.81	-2.0
1,294,844	+		GFF1265	0.81	-1.3
1,294,844	+		GFF1265	0.81	+0.9
1,294,844	+		GFF1265	0.81	-1.6
1,294,844	+		GFF1265	0.81	+0.5
1,294,844	+		GFF1265	0.81	-0.3
1,294,852	-		GFF1265	0.82	-0.4
1,294,852	-		GFF1265	0.82	+0.8
1,294,852	-		GFF1265	0.82	+0.2
1,294,852	-		GFF1265	0.82	-1.7
1,294,852	-		GFF1265	0.82	-1.1
1,294,852	-		GFF1265	0.82	-1.5
1,294,852	-		GFF1265	0.82	-0.2
1,294,852	-		GFF1265	0.82	-1.1
1,294,852	-		GFF1265	0.82	+1.0
1,294,852	-		GFF1265	0.82	-1.1
1,294,852	-		GFF1265	0.82	-1.7
1,294,852	-		GFF1265	0.82	+0.8
1,294,852	-		GFF1265	0.82	-0.3
1,294,852	-		GFF1265	0.82	-1.1
1,294,852	-		GFF1265	0.82	-1.5
1,294,862	-		GFF1265	0.83	-1.6
1,294,862	-		GFF1265	0.83	+1.4
1,294,873	+		GFF1265	0.84	+1.2
1,294,873	+		GFF1265	0.84	-1.3
1,294,875	-		GFF1265	0.85	+0.7
1,294,889	+		GFF1265	0.86	+0.0
1,294,897	-		GFF1265	0.87	-1.3
1,294,905	-		GFF1265	0.88	-1.1
1,294,916	-		GFF1265	0.89	+0.9
1,294,937	-				+2.1
1,294,968	+				-0.9
1,294,968	+				+0.6
1,294,970	+				-0.1
1,294,978	-				-0.4
1,294,978	-				+0.8
1,294,983	-				-0.8
1,294,992	-				-0.5
1,294,992	-				-0.2
1,295,021	+				-0.2
1,295,021	+				-0.8
1,295,021	+				-1.7
1,295,057	+				-1.7
1,295,057	+				-0.5
1,295,058	-				+0.7
1,295,065	-				-0.4
1,295,086	+				-1.5
1,295,098	+				-1.1
1,295,113	+				+0.9
1,295,113	+				-0.8
1,295,121	-				+0.6
1,295,121	-				-1.5
1,295,121	-				+0.5
1,295,121	-				-1.0
1,295,123	+				+1.1
1,295,132	+				-1.6
1,295,132	+				+0.5
1,295,140	-				-0.3
1,295,141	-				+1.2
1,295,164	+		GFF1266	0.11	+0.8
1,295,204	-		GFF1266	0.14	-0.3
1,295,207	+		GFF1266	0.15	+0.7
1,295,215	+		GFF1266	0.15	+0.3
1,295,225	+		GFF1266	0.16	+0.3
1,295,226	+		GFF1266	0.16	-0.2
1,295,232	+		GFF1266	0.16	+0.4
1,295,232	+		GFF1266	0.16	-0.9
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