Strain Fitness in Sphingobium sp. HT1-2 around GFF1211

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,230,864	-		GFF1210	0.52	+1.7
1,230,875	+		GFF1210	0.53	-0.2
1,230,881	-		GFF1210	0.53	+0.8
1,230,894	+		GFF1210	0.54	-0.4
1,230,897	-		GFF1210	0.55	+1.1
1,230,899	-		GFF1210	0.55	+0.9
1,230,924	-		GFF1210	0.57	-1.4
1,231,123	-		GFF1210	0.71	+1.3
1,231,123	-		GFF1210	0.71	-0.4
1,231,198	+		GFF1210	0.77	+0.3
1,231,198	+		GFF1210	0.77	-0.9
1,231,198	+		GFF1210	0.77	-0.5
1,231,203	+		GFF1210	0.77	+0.8
1,231,203	+		GFF1210	0.77	-0.1
1,231,203	+		GFF1210	0.77	+0.9
1,231,203	+		GFF1210	0.77	-0.5
1,231,203	+		GFF1210	0.77	+0.3
1,231,203	+		GFF1210	0.77	+1.1
1,231,203	+		GFF1210	0.77	-0.3
1,231,206	-		GFF1210	0.77	-0.9
1,231,211	-		GFF1210	0.78	+1.3
1,231,211	-		GFF1210	0.78	+0.2
1,231,234	+		GFF1210	0.79	+0.2
1,231,259	+		GFF1210	0.81	+1.3
1,231,267	-		GFF1210	0.82	+0.8
1,231,324	-		GFF1210	0.86	-0.2
1,231,337	+		GFF1210	0.87	+0.3
1,231,359	-		GFF1210	0.89	-0.4
1,231,398	-				+1.4
1,231,515	-				+0.6
1,231,515	-				-0.6
1,231,563	+				-0.6
1,231,582	+				-0.1
1,231,584	+				+0.7
1,231,590	-				-0.2
1,231,590	-				+1.1
1,231,592	-				-0.3
1,231,598	+				+1.8
1,231,622	+				-0.9
1,231,623	+				+0.9
1,231,630	-				-1.4
1,231,630	-				-1.2
1,231,659	+				+0.0
1,231,674	+				+0.1
1,231,674	+				-0.9
1,231,674	+				-0.1
1,231,674	+				-1.5
1,231,674	+				-0.3
1,231,682	-				-0.3
1,231,682	-				-0.7
1,231,682	-				-1.0
1,231,682	-				+0.1
1,231,682	-				-0.2
1,231,686	-				-0.2
1,231,751	-		GFF1211	0.12	+0.4
1,231,762	-		GFF1211	0.13	-0.7
1,231,763	-		GFF1211	0.13	+0.1
1,231,774	-		GFF1211	0.14	+0.7
1,231,791	-		GFF1211	0.16	-0.8
1,231,797	-		GFF1211	0.16	-1.2
1,231,815	+		GFF1211	0.18	-1.3
1,231,821	-		GFF1211	0.18	+0.0
1,231,823	-		GFF1211	0.18	-1.2
1,231,854	-		GFF1211	0.21	+0.0
1,231,873	+		GFF1211	0.22	+0.6
1,231,942	+		GFF1211	0.28	+0.3
1,231,950	-		GFF1211	0.29	-0.4
1,231,957	+		GFF1211	0.29	+0.5
1,231,961	+		GFF1211	0.30	-0.1
1,231,988	-		GFF1211	0.32	-1.5
1,232,019	-		GFF1211	0.35	-0.5
1,232,102	-		GFF1211	0.41	+0.6
1,232,122	+		GFF1211	0.43	+0.7
1,232,151	-		GFF1211	0.46	+0.6
1,232,205	+		GFF1211	0.50	+0.1
1,232,205	+		GFF1211	0.50	+1.5
1,232,205	+		GFF1211	0.50	-1.6
1,232,276	+		GFF1211	0.56	-0.4
1,232,276	+		GFF1211	0.56	-0.0
1,232,279	-		GFF1211	0.56	-0.7
1,232,287	-		GFF1211	0.57	+1.6
1,232,304	-		GFF1211	0.58	-0.3
1,232,315	+		GFF1211	0.59	+1.9
1,232,328	-		GFF1211	0.60	-1.2
1,232,330	+		GFF1211	0.60	+0.8
1,232,331	-		GFF1211	0.60	+0.2
1,232,338	-		GFF1211	0.61	-1.1
1,232,378	+		GFF1211	0.64	+2.0
1,232,421	+		GFF1211	0.68	+0.4
1,232,442	+		GFF1211	0.70	-1.5
1,232,450	-		GFF1211	0.70	+0.3
1,232,505	+		GFF1211	0.75	-0.8
1,232,505	+		GFF1211	0.75	+0.8
1,232,546	+		GFF1211	0.78	+1.3
1,232,552	+		GFF1211	0.79	+0.6
1,232,552	+		GFF1211	0.79	+0.8
1,232,572	+		GFF1211	0.80	-0.3
1,232,604	+		GFF1211	0.83	-0.4
1,232,604	+		GFF1211	0.83	-0.6
1,232,604	+		GFF1211	0.83	+0.6
1,232,604	+		GFF1211	0.83	+0.5
1,232,604	+		GFF1211	0.83	+0.3
1,232,604	+		GFF1211	0.83	+0.3
1,232,604	+		GFF1211	0.83	+1.2
1,232,610	-		GFF1211	0.84	-0.6
1,232,612	-		GFF1211	0.84	-1.9
1,232,616	-		GFF1211	0.84	+0.3
1,232,669	+		GFF1211	0.88	-1.2
1,232,677	-		GFF1211	0.89	+0.0
1,232,700	-				-0.4
1,232,709	+				+1.0
1,232,709	+				+1.0
1,232,751	-				+0.7
1,232,753	+				+0.7
1,232,766	+				+1.8
1,232,766	+				-0.5
1,232,774	-				+1.1
1,232,775	-				+0.4
1,232,775	-				+0.9
1,232,786	-				-0.5
1,232,789	+				-0.0
1,232,789	+				-0.3
1,232,789	+				-1.0
1,232,789	+				+0.2
1,232,789	+				+1.0
1,232,789	+				+0.3
1,232,789	+				-0.4
1,232,789	+				+0.9
1,232,797	-				+0.4
1,232,797	-				+0.2
1,232,797	-				-0.3
1,232,797	-				-0.9
1,232,797	-				-1.2
1,232,811	+				+1.6
1,232,819	-				-0.7
1,232,819	-				+0.2
1,232,947	+				+2.2
1,232,955	-				+0.3
1,232,957	+		GFF1212	0.10	+0.4
1,232,964	-		GFF1212	0.10	+0.3
1,233,008	+		GFF1212	0.13	-1.2
1,233,008	+		GFF1212	0.13	-0.0
1,233,019	+		GFF1212	0.14	+1.2
1,233,039	-		GFF1212	0.15	+0.9
1,233,039	-		GFF1212	0.15	-1.2
1,233,041	+		GFF1212	0.15	+1.3
1,233,044	-		GFF1212	0.16	+0.3
1,233,046	+		GFF1212	0.16	-0.7
1,233,046	+		GFF1212	0.16	+0.3
1,233,049	-		GFF1212	0.16	+1.7
1,233,066	+		GFF1212	0.17	-0.5
1,233,075	+		GFF1212	0.18	+0.3
1,233,075	+		GFF1212	0.18	+0.0
1,233,075	+		GFF1212	0.18	-1.0
1,233,083	-		GFF1212	0.18	-0.9
1,233,083	-		GFF1212	0.18	+0.8
1,233,120	+		GFF1212	0.21	-1.7
1,233,124	+		GFF1212	0.21	-0.3
1,233,125	+		GFF1212	0.21	+0.8
1,233,128	-		GFF1212	0.21	-0.0
1,233,128	-		GFF1212	0.21	+0.4
1,233,128	-		GFF1212	0.21	-1.2
1,233,128	-		GFF1212	0.21	+0.6
1,233,128	-		GFF1212	0.21	+0.2
1,233,128	-		GFF1212	0.21	+0.0
1,233,132	-		GFF1212	0.21	+0.5
1,233,132	-		GFF1212	0.21	-0.9
1,233,156	+		GFF1212	0.23	-0.1
1,233,164	-		GFF1212	0.24	+1.0
1,233,164	-		GFF1212	0.24	-1.1
1,233,164	-		GFF1212	0.24	-0.2
1,233,164	-		GFF1212	0.24	-0.9
1,233,166	+		GFF1212	0.24	-0.9
1,233,174	-		GFF1212	0.24	-1.2
1,233,174	-		GFF1212	0.24	-1.5
1,233,189	-		GFF1212	0.25	-1.0
1,233,217	-		GFF1212	0.27	+1.2
1,233,295	+		GFF1212	0.32	+0.8
1,233,323	+		GFF1212	0.34	+0.7
1,233,323	+		GFF1212	0.34	-0.2
1,233,323	+		GFF1212	0.34	+0.1
1,233,347	+		GFF1212	0.35	-0.6
1,233,347	-		GFF1212	0.35	+1.0
1,233,355	+		GFF1212	0.36	-0.1
1,233,355	+		GFF1212	0.36	+0.6
1,233,366	+		GFF1212	0.37	-0.1
1,233,372	+		GFF1212	0.37	-1.0
1,233,372	+		GFF1212	0.37	+0.6
1,233,382	+		GFF1212	0.38	-1.0
1,233,382	+		GFF1212	0.38	+0.6
1,233,382	+		GFF1212	0.38	+1.0
1,233,382	+		GFF1212	0.38	+0.1
1,233,382	+		GFF1212	0.38	+1.2
1,233,382	+		GFF1212	0.38	-2.0
1,233,390	-		GFF1212	0.38	-0.7
1,233,390	-		GFF1212	0.38	+0.5
1,233,390	-		GFF1212	0.38	-0.8
1,233,408	+		GFF1212	0.39	+0.0
1,233,418	+		GFF1212	0.40	-0.4
1,233,445	+		GFF1212	0.42	+1.0
1,233,445	+		GFF1212	0.42	-0.2
1,233,449	-		GFF1212	0.42	-0.5
1,233,453	-		GFF1212	0.42	+0.2
1,233,460	+		GFF1212	0.43	+0.0
1,233,460	+		GFF1212	0.43	-0.1
1,233,468	-		GFF1212	0.43	+0.3
1,233,468	-		GFF1212	0.43	+0.3
1,233,468	-		GFF1212	0.43	+0.0
1,233,480	-		GFF1212	0.44	+3.2
1,233,494	+		GFF1212	0.45	+0.3
1,233,502	-		GFF1212	0.46	-0.5
1,233,520	+		GFF1212	0.47	-0.8
1,233,520	+		GFF1212	0.47	+0.3
1,233,522	+		GFF1212	0.47	+1.5
1,233,522	+		GFF1212	0.47	+0.1
1,233,528	-		GFF1212	0.47	+0.2
1,233,528	-		GFF1212	0.47	+1.1
1,233,530	+		GFF1212	0.47	+0.8
1,233,530	+		GFF1212	0.47	-0.7
1,233,538	-		GFF1212	0.48	+1.6
1,233,538	-		GFF1212	0.48	+1.1
1,233,548	-		GFF1212	0.49	+0.0
1,233,548	-		GFF1212	0.49	-0.8
1,233,550	+		GFF1212	0.49	-0.3
1,233,558	-		GFF1212	0.49	+2.6
1,233,558	-		GFF1212	0.49	+0.5
1,233,584	-		GFF1212	0.51	+0.3
1,233,664	+		GFF1212	0.56	+0.1
1,233,672	-		GFF1212	0.57	-1.3
1,233,680	-		GFF1212	0.57	-1.2
1,233,721	+		GFF1212	0.60	+1.4