Strain Fitness in Sphingobium sp. HT1-2 around GFF1197

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,209,067	+				-1.7
1,209,067	+				+0.5
1,209,067	+				-1.6
1,209,075	-				+1.8
1,209,075	-				-0.2
1,209,075	-				+1.0
1,209,075	-				+0.1
1,209,082	+				+2.2
1,209,085	-				+0.2
1,209,087	+				-0.1
1,209,087	+				+0.3
1,209,087	+				-0.1
1,209,095	-				-0.5
1,209,100	-				+1.0
1,209,100	-				-1.0
1,209,100	-				-0.4
1,209,105	+				-1.2
1,209,105	+				-0.8
1,209,105	+				-1.1
1,209,105	+				-0.6
1,209,105	-				-1.2
1,209,107	+				+0.0
1,209,113	-				-0.6
1,209,113	-				-0.9
1,209,113	-				+1.2
1,209,113	-				-0.3
1,209,113	-				-1.2
1,209,113	-				-1.5
1,209,113	-				+0.6
1,209,115	-				-0.8
1,209,115	-				-0.8
1,209,115	-				+1.3
1,209,125	+				+0.3
1,209,135	+				+0.8
1,209,140	+				-1.1
1,209,143	-				+0.5
1,209,143	-				-1.4
1,209,178	+		GFF1196	0.12	-0.3
1,209,196	+		GFF1196	0.14	+0.5
1,209,218	+		GFF1196	0.16	+2.4
1,209,219	+		GFF1196	0.16	+0.8
1,209,219	+		GFF1196	0.16	+1.6
1,209,224	+		GFF1196	0.17	+0.1
1,209,227	-		GFF1196	0.17	+2.4
1,209,241	+		GFF1196	0.19	+1.3
1,209,243	+		GFF1196	0.19	-0.5
1,209,243	-		GFF1196	0.19	-0.9
1,209,249	-		GFF1196	0.20	-0.9
1,209,251	-		GFF1196	0.20	-0.8
1,209,251	-		GFF1196	0.20	+0.2
1,209,262	-		GFF1196	0.21	+0.3
1,209,262	-		GFF1196	0.21	-0.9
1,209,262	-		GFF1196	0.21	+1.0
1,209,262	-		GFF1196	0.21	-1.0
1,209,303	-		GFF1196	0.26	-1.6
1,209,348	-		GFF1196	0.30	-1.3
1,209,348	-		GFF1196	0.30	-0.3
1,209,378	+		GFF1196	0.34	+1.4
1,209,419	+		GFF1196	0.38	+0.1
1,209,419	+		GFF1196	0.38	+0.3
1,209,419	+		GFF1196	0.38	-0.8
1,209,439	-		GFF1196	0.40	-2.0
1,209,444	+		GFF1196	0.41	-0.7
1,209,447	-		GFF1196	0.41	-0.3
1,209,457	-		GFF1196	0.42	-0.8
1,209,457	-		GFF1196	0.42	-0.4
1,209,467	+		GFF1196	0.43	-0.5
1,209,480	+		GFF1196	0.45	+0.6
1,209,586	+		GFF1196	0.57	-1.5
1,209,640	+		GFF1196	0.62	+1.0
1,209,640	+		GFF1196	0.62	-1.3
1,209,648	-		GFF1196	0.63	-1.2
1,209,648	-		GFF1196	0.63	+1.6
1,209,670	-		GFF1196	0.66	-0.4
1,209,670	-		GFF1196	0.66	-1.3
1,209,698	+		GFF1196	0.69	-0.4
1,209,698	+		GFF1196	0.69	-0.6
1,209,703	-		GFF1196	0.69	+1.6
1,209,705	+		GFF1196	0.70	-1.9
1,209,741	+		GFF1196	0.73	-0.9
1,209,791	-		GFF1196	0.79	+0.6
1,209,817	-		GFF1196	0.82	-0.3
1,209,825	-		GFF1196	0.83	-2.2
1,209,842	-		GFF1196	0.84	+0.6
1,209,865	+		GFF1196	0.87	-0.3
1,209,865	+		GFF1196	0.87	-0.8
1,209,865	+		GFF1196	0.87	-0.2
1,209,865	+		GFF1196	0.87	+0.9
1,209,873	-		GFF1196	0.88	-0.2
1,209,873	-		GFF1196	0.88	-0.3
1,209,873	-		GFF1196	0.88	-1.3
1,209,873	-		GFF1196	0.88	+1.8
1,209,879	+		GFF1196	0.89	-2.6
1,209,879	+		GFF1196	0.89	+0.0
1,209,887	-		GFF1196	0.89	-0.1
1,209,887	-		GFF1196	0.89	-1.3
1,209,887	-		GFF1196	0.89	+0.3
1,209,901	-				-1.2
1,209,911	+				+0.0
1,209,922	+				+1.0
1,209,930	-				-1.1
1,209,940	-				-0.3
1,209,944	-				-0.4
1,209,946	+				+1.4
1,209,946	+				+0.4
1,209,947	+				-1.1
1,209,955	-				+0.3
1,209,955	-				-0.3
1,209,955	-				-0.5
1,209,955	-				+1.1
1,209,955	-				-1.1
1,209,966	-				-1.5
1,209,997	-				-0.3
1,210,050	+				+0.5
1,210,064	-				+0.7
1,210,092	+				+1.1
1,210,097	+				+2.0
1,210,105	-				-0.3
1,210,105	-				+0.4
1,210,116	-				-1.6
1,210,173	+				+0.6
1,210,173	+				+1.9
1,210,173	+				-0.3
1,210,173	+				-1.3
1,210,183	+		GFF1197	0.10	-1.3
1,210,183	+		GFF1197	0.10	+1.1
1,210,191	-		GFF1197	0.11	+0.6
1,210,198	+		GFF1197	0.12	-1.1
1,210,198	+		GFF1197	0.12	+0.4
1,210,198	+		GFF1197	0.12	+0.0
1,210,200	-		GFF1197	0.12	+0.4
1,210,216	+		GFF1197	0.13	+0.1
1,210,236	+		GFF1197	0.15	+2.0
1,210,236	+		GFF1197	0.15	+0.0
1,210,244	-		GFF1197	0.15	+0.8
1,210,244	-		GFF1197	0.15	+0.1
1,210,244	-		GFF1197	0.15	-1.4
1,210,259	+		GFF1197	0.16	+0.7
1,210,259	+		GFF1197	0.16	+0.1
1,210,270	+		GFF1197	0.17	+0.3
1,210,303	+		GFF1197	0.20	-1.1
1,210,329	+		GFF1197	0.22	-1.2
1,210,329	-		GFF1197	0.22	-0.4
1,210,331	+		GFF1197	0.22	-0.1
1,210,331	+		GFF1197	0.22	-1.5
1,210,331	+		GFF1197	0.22	+0.0
1,210,440	-		GFF1197	0.31	-0.4
1,210,445	-		GFF1197	0.31	+1.1
1,210,457	+		GFF1197	0.32	+0.6
1,210,507	-		GFF1197	0.36	+0.7
1,210,520	-		GFF1197	0.37	-0.2
1,210,567	+		GFF1197	0.41	+0.7
1,210,567	+		GFF1197	0.41	+0.3
1,210,567	+		GFF1197	0.41	-0.5
1,210,575	-		GFF1197	0.42	-0.2
1,210,577	+		GFF1197	0.42	+1.0
1,210,577	+		GFF1197	0.42	+1.3
1,210,577	+		GFF1197	0.42	+1.0
1,210,584	+		GFF1197	0.42	-0.4
1,210,585	-		GFF1197	0.43	+0.1
1,210,585	-		GFF1197	0.43	+0.2
1,210,585	-		GFF1197	0.43	+1.8
1,210,587	+		GFF1197	0.43	+0.3
1,210,665	+		GFF1197	0.49	+0.3
1,210,690	-		GFF1197	0.51	-0.8
1,210,700	+		GFF1197	0.52	-1.3
1,210,715	+		GFF1197	0.53	-0.0
1,210,715	+		GFF1197	0.53	-1.0
1,210,716	+		GFF1197	0.53	+0.5
1,210,716	-		GFF1197	0.53	+0.6
1,210,723	-		GFF1197	0.54	+1.0
1,210,733	-		GFF1197	0.54	+1.8
1,210,797	-		GFF1197	0.59	-0.4
1,210,815	-		GFF1197	0.61	+0.7
1,210,821	+		GFF1197	0.61	+0.6
1,210,821	+		GFF1197	0.61	-1.2
1,210,846	-		GFF1197	0.63	+1.3
1,210,848	-		GFF1197	0.64	+1.4
1,210,848	-		GFF1197	0.64	-0.6
1,210,861	-		GFF1197	0.65	-0.5
1,210,868	+		GFF1197	0.65	-1.3
1,210,868	+		GFF1197	0.65	-0.8
1,210,876	-		GFF1197	0.66	-1.1
1,210,878	-		GFF1197	0.66	+0.1
1,210,896	+		GFF1197	0.67	+0.5
1,210,896	+		GFF1197	0.67	-0.3
1,210,896	+		GFF1197	0.67	-0.3
1,210,904	-		GFF1197	0.68	-1.1
1,210,904	-		GFF1197	0.68	-0.1
1,210,904	-		GFF1197	0.68	+0.6
1,210,904	-		GFF1197	0.68	-0.6
1,210,938	-		GFF1197	0.71	+1.3
1,210,961	+		GFF1197	0.73	+0.2
1,210,961	+		GFF1197	0.73	+0.6
1,210,961	+		GFF1197	0.73	-0.2
1,210,969	-		GFF1197	0.73	-0.5
1,210,971	+		GFF1197	0.73	+1.7
1,211,025	-		GFF1197	0.78	+0.7
1,211,035	+		GFF1197	0.78	+1.0
1,211,043	-		GFF1197	0.79	+1.3
1,211,093	+		GFF1197	0.83	+0.5
1,211,094	+		GFF1197	0.83	+0.5
1,211,094	+		GFF1197	0.83	-1.6
1,211,109	+		GFF1197	0.84	+0.8
1,211,159	+		GFF1197	0.88	-1.1
1,211,176	-		GFF1197	0.90	-0.4
1,211,176	-		GFF1197	0.90	+1.6
1,211,176	-		GFF1197	0.90	-0.7
1,211,195	+				-1.1
1,211,211	-				-1.6
1,211,211	-				-1.1
1,211,211	-				-0.2
1,211,235	+				-0.2
1,211,261	+				-0.3
1,211,315	+				-1.3
1,211,327	+				+1.0
1,211,327	+				+1.9
1,211,338	+				-1.5
1,211,346	-				+0.3
1,211,360	+				+1.0
1,211,360	+				+0.1
1,211,360	+				+0.0
1,211,360	+				-0.6
1,211,360	+				-0.8
1,211,360	+				-0.6
1,211,360	+				-1.6
1,211,361	-				+1.4
1,211,368	-				+0.4
1,211,368	-				-0.8
1,211,368	-				+0.2
1,211,368	-				-1.1
1,211,368	-				+0.0
1,211,368	-				+0.7
1,211,413	+				-0.9
1,211,415	+				+0.3
1,211,436	+		GFF1198	0.11	+0.0
1,211,446	+		GFF1198	0.12	-0.5
1,211,496	+		GFF1198	0.16	-0.3
1,211,501	+		GFF1198	0.16	+0.7
1,211,562	-		GFF1198	0.21	-0.2
1,211,567	-		GFF1198	0.22	-0.7
1,211,567	-		GFF1198	0.22	+0.6
1,211,631	-		GFF1198	0.27	+0.9
1,211,651	-		GFF1198	0.29	-0.9
1,211,684	-		GFF1198	0.31	-1.1
1,211,704	+		GFF1198	0.33	+1.9
1,211,707	-		GFF1198	0.33	+0.7
1,211,715	+		GFF1198	0.34	+1.2
1,211,715	+		GFF1198	0.34	+1.6
1,211,715	+		GFF1198	0.34	-1.1
1,211,715	+		GFF1198	0.34	+0.1
1,211,729	-		GFF1198	0.35	-1.5
1,211,741	+		GFF1198	0.36	-0.5
1,211,789	+		GFF1198	0.40	-0.1
1,211,806	+		GFF1198	0.41	-1.4
1,211,843	+		GFF1198	0.45	+0.8
1,211,846	-		GFF1198	0.45	+1.0
1,211,857	+		GFF1198	0.46	+0.2
1,211,857	+		GFF1198	0.46	+0.6
1,211,857	+		GFF1198	0.46	+1.0
1,211,857	+		GFF1198	0.46	+0.1
1,211,865	+		GFF1198	0.46	-1.7
1,211,865	-		GFF1198	0.46	+0.0
1,211,865	-		GFF1198	0.46	-0.8
1,211,865	-		GFF1198	0.46	-0.2
1,211,870	+		GFF1198	0.47	+0.0
1,211,880	+		GFF1198	0.48	-1.5
1,211,888	-		GFF1198	0.48	-1.8
1,211,888	-		GFF1198	0.48	+3.0
1,211,889	-		GFF1198	0.48	-0.1
1,211,966	-		GFF1198	0.55	+0.3
1,211,969	+		GFF1198	0.55	+1.6
1,211,969	+		GFF1198	0.55	+0.8
1,211,982	-		GFF1198	0.56	+0.7
1,212,025	+		GFF1198	0.60	-0.5
1,212,033	-		GFF1198	0.60	+0.0
1,212,043	-		GFF1198	0.61	-0.9
1,212,043	-		GFF1198	0.61	+1.6
1,212,059	-		GFF1198	0.63	+0.0
1,212,059	-		GFF1198	0.63	-0.6
1,212,132	+		GFF1198	0.69	-0.9
1,212,143	+		GFF1198	0.69	-0.5
1,212,151	-		GFF1198	0.70	-0.5
1,212,152	-		GFF1198	0.70	+1.1
1,212,171	-		GFF1198	0.72	-1.3
1,212,196	-		GFF1198	0.74	+0.3
1,212,196	-		GFF1198	0.74	-0.9
1,212,205	+		GFF1198	0.75	-1.2
1,212,207	-		GFF1198	0.75	-0.0
1,212,253	+		GFF1198	0.79	+0.1
1,212,279	+		GFF1198	0.81	+0.8