Strain Fitness in Sphingobium sp. HT1-2 around GFF1148

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,153,282	-		GFF1147	0.60	+1.5
1,153,291	+		GFF1147	0.61	-0.8
1,153,291	+		GFF1147	0.61	-1.1
1,153,291	+		GFF1147	0.61	-0.3
1,153,291	+		GFF1147	0.61	+0.7
1,153,299	-		GFF1147	0.61	+0.1
1,153,301	+		GFF1147	0.61	-0.4
1,153,344	-		GFF1147	0.63	-0.5
1,153,357	+		GFF1147	0.64	-1.4
1,153,361	+		GFF1147	0.64	-1.6
1,153,362	+		GFF1147	0.64	-1.9
1,153,386	+		GFF1147	0.65	-1.6
1,153,386	+		GFF1147	0.65	-2.1
1,153,386	+		GFF1147	0.65	-1.3
1,153,386	+		GFF1147	0.65	-0.6
1,153,394	-		GFF1147	0.65	-1.1
1,153,394	-		GFF1147	0.65	-0.8
1,153,394	-		GFF1147	0.65	-1.7
1,153,396	+		GFF1147	0.65	-0.9
1,153,404	-		GFF1147	0.66	-1.4
1,153,440	-		GFF1147	0.67	-0.4
1,153,440	-		GFF1147	0.67	-1.8
1,153,440	-		GFF1147	0.67	-0.5
1,153,442	-		GFF1147	0.67	+0.3
1,153,476	-		GFF1147	0.69	-0.3
1,153,507	-		GFF1147	0.70	-1.2
1,153,524	-		GFF1147	0.71	+0.5
1,153,524	-		GFF1147	0.71	-1.0
1,153,524	-		GFF1147	0.71	-1.1
1,153,524	-		GFF1147	0.71	+0.7
1,153,524	-		GFF1147	0.71	+0.7
1,153,528	+		GFF1147	0.71	-1.2
1,153,528	+		GFF1147	0.71	-1.5
1,153,528	+		GFF1147	0.71	-1.5
1,153,531	-		GFF1147	0.71	-1.3
1,153,534	-		GFF1147	0.71	+0.5
1,153,536	-		GFF1147	0.72	-0.4
1,153,536	-		GFF1147	0.72	-1.0
1,153,536	-		GFF1147	0.72	-2.1
1,153,536	-		GFF1147	0.72	-0.6
1,153,536	-		GFF1147	0.72	+1.1
1,153,536	-		GFF1147	0.72	-1.9
1,153,536	-		GFF1147	0.72	-0.4
1,153,541	-		GFF1147	0.72	-0.2
1,153,581	-		GFF1147	0.74	+0.7
1,153,593	-		GFF1147	0.74	-1.8
1,153,596	+		GFF1147	0.74	-0.9
1,153,596	+		GFF1147	0.74	-0.5
1,153,596	+		GFF1147	0.74	-0.5
1,153,601	+		GFF1147	0.74	-0.9
1,153,603	-		GFF1147	0.75	-0.4
1,153,603	-		GFF1147	0.75	-0.3
1,153,603	-		GFF1147	0.75	-1.5
1,153,604	-		GFF1147	0.75	+0.1
1,153,604	-		GFF1147	0.75	-0.8
1,153,626	-		GFF1147	0.76	-0.3
1,153,636	+		GFF1147	0.76	-0.5
1,153,636	+		GFF1147	0.76	-0.9
1,153,636	+		GFF1147	0.76	-0.3
1,153,644	-		GFF1147	0.76	-1.0
1,153,644	-		GFF1147	0.76	+0.3
1,153,644	-		GFF1147	0.76	-0.3
1,153,644	-		GFF1147	0.76	-0.3
1,153,675	-		GFF1147	0.78	-0.8
1,153,675	-		GFF1147	0.78	+1.1
1,153,688	-		GFF1147	0.78	-2.2
1,153,713	-		GFF1147	0.79	-1.9
1,153,713	-		GFF1147	0.79	-0.6
1,153,757	+		GFF1147	0.81	-1.0
1,153,790	-		GFF1147	0.83	-1.0
1,153,813	-		GFF1147	0.84	+0.1
1,153,832	+		GFF1147	0.85	-0.3
1,153,832	+		GFF1147	0.85	-1.6
1,153,832	+		GFF1147	0.85	+1.0
1,153,839	+		GFF1147	0.85	-0.4
1,153,840	-		GFF1147	0.85	-0.4
1,153,840	-		GFF1147	0.85	-0.4
1,153,840	-		GFF1147	0.85	+0.3
1,153,868	+		GFF1147	0.86	+0.7
1,153,868	+		GFF1147	0.86	+0.0
1,153,876	-		GFF1147	0.87	-0.4
1,153,876	-		GFF1147	0.87	-2.0
1,153,876	-		GFF1147	0.87	-0.2
1,153,876	-		GFF1147	0.87	-0.8
1,153,878	+		GFF1147	0.87	-0.4
1,153,881	-		GFF1147	0.87	+1.0
1,153,902	+		GFF1147	0.88	+0.6
1,153,907	+		GFF1147	0.88	-1.4
1,153,968	+				+0.9
1,153,994	+				-1.5
1,153,994	+				-0.3
1,153,999	+				+0.8
1,154,002	+				-0.8
1,154,002	-				+0.4
1,154,002	-				+1.4
1,154,004	+				+0.6
1,154,004	+				-0.9
1,154,004	+				-0.3
1,154,004	+				-0.2
1,154,004	+				-1.2
1,154,004	+				+0.1
1,154,004	+				-2.2
1,154,004	+				+0.7
1,154,004	+				-2.4
1,154,004	+				-1.0
1,154,004	+				-0.7
1,154,004	+				-0.5
1,154,004	+				-1.2
1,154,004	+				-0.5
1,154,004	+				+0.4
1,154,004	+				-2.0
1,154,004	+				-0.6
1,154,004	+				-0.1
1,154,004	+				-1.0
1,154,004	+				-0.7
1,154,004	+				-0.6
1,154,004	+				-0.5
1,154,004	+				-1.5
1,154,004	+				-0.5
1,154,004	+				-0.4
1,154,004	+				-0.6
1,154,004	+				-0.5
1,154,004	+				-1.1
1,154,004	+				-0.2
1,154,004	+				-0.5
1,154,004	+				+0.3
1,154,004	+				-0.9
1,154,004	+				+1.7
1,154,004	+				-1.6
1,154,004	+				-1.4
1,154,004	+				-0.6
1,154,004	+				-0.6
1,154,004	+				-1.0
1,154,004	+				-0.5
1,154,004	+				+2.0
1,154,004	+				-1.8
1,154,009	+				-0.9
1,154,010	+				+0.7
1,154,012	-				-1.0
1,154,012	-				-2.0
1,154,012	-				+0.0
1,154,012	-				-0.2
1,154,012	-				+1.3
1,154,012	-				-0.4
1,154,012	-				+0.6
1,154,012	-				+0.7
1,154,012	-				-1.1
1,154,012	-				-1.3
1,154,012	-				-0.8
1,154,012	-				-1.9
1,154,012	-				-0.1
1,154,012	-				+0.4
1,154,012	-				+1.1
1,154,012	-				-1.3
1,154,012	-				+0.0
1,154,012	-				-0.7
1,154,012	-				-0.6
1,154,012	-				-2.1
1,154,012	-				-0.1
1,154,012	-				+0.5
1,154,012	-				+0.7
1,154,012	-				-1.1
1,154,012	-				-0.6
1,154,012	-				-0.3
1,154,012	-				+0.4
1,154,012	-				-0.4
1,154,012	-				+1.3
1,154,012	-				+0.6
1,154,012	-				-1.1
1,154,012	-				+1.0
1,154,012	-				+0.5
1,154,012	-				-0.7
1,154,012	-				-0.0
1,154,012	-				-0.2
1,154,012	-				-0.2
1,154,012	-				-0.1
1,154,012	-				+1.0
1,154,012	-				-0.5
1,154,012	-				-2.6
1,154,012	-				-0.5
1,154,012	-				+1.3
1,154,012	-				+0.3
1,154,012	-				-0.0
1,154,012	-				-0.6
1,154,017	-				-1.5
1,154,018	-				+1.8
1,154,018	-				+2.0
1,154,018	-				-0.1
1,154,022	-				-0.6
1,154,029	+				-1.3
1,154,047	-				-0.3
1,154,052	-				-0.7
1,154,052	-				+0.1
1,154,065	+				-0.4
1,154,071	+				-1.0
1,154,088	-				-0.5
1,154,113	+				-1.9
1,154,113	+				+0.5
1,154,113	+				-1.8
1,154,113	+				+0.4
1,154,121	-				-1.8
1,154,121	-				+0.6
1,154,121	-				-1.2
1,154,121	-				-1.9
1,154,123	+				+1.3
1,154,126	-				-2.5
1,154,128	+				-1.4
1,154,128	+				-1.3
1,154,131	-				-2.2
1,154,133	+				-1.7
1,154,133	+				-1.5
1,154,133	+				-0.3
1,154,133	+				-0.4
1,154,136	-				-0.8
1,154,139	+				-1.0
1,154,141	-				+0.4
1,154,141	-				+0.1
1,154,141	-				-1.7
1,154,141	-				-0.1
1,154,141	-				-1.1
1,154,141	-				-1.7
1,154,141	-				-0.7
1,154,141	-				-1.0
1,154,141	-				-1.5
1,154,141	-				-1.1
1,154,146	-				-0.4
1,154,198	-				-1.2
1,154,200	-				-1.8
1,154,271	-				-0.6
1,154,271	-				+0.0
1,154,301	+				-1.1
1,154,332	-				+0.4
1,154,356	-				-0.4
1,154,358	+				+0.3
1,154,358	+				-1.5
1,154,358	+				-0.9
1,154,392	+				-0.4
1,154,395	-				+0.9
1,154,420	-		GFF1148	0.10	+1.2
1,154,430	-		GFF1148	0.11	-2.1
1,154,446	+		GFF1148	0.12	-0.3
1,154,453	+		GFF1148	0.12	+0.6
1,154,458	+		GFF1148	0.13	-1.0
1,154,458	+		GFF1148	0.13	-0.3
1,154,458	+		GFF1148	0.13	+0.6
1,154,459	+		GFF1148	0.13	-0.5
1,154,464	+		GFF1148	0.13	-0.3
1,154,464	+		GFF1148	0.13	-1.3
1,154,464	+		GFF1148	0.13	-2.5
1,154,464	+		GFF1148	0.13	-2.0
1,154,464	+		GFF1148	0.13	-0.7
1,154,464	+		GFF1148	0.13	+1.0
1,154,466	-		GFF1148	0.13	-2.0
1,154,466	-		GFF1148	0.13	-1.0
1,154,467	-		GFF1148	0.13	-2.4
1,154,469	+		GFF1148	0.13	-1.1
1,154,469	+		GFF1148	0.13	-0.3
1,154,471	-		GFF1148	0.14	-0.8
1,154,477	-		GFF1148	0.14	+0.1
1,154,477	-		GFF1148	0.14	-0.6
1,154,481	+		GFF1148	0.14	-0.2
1,154,489	-		GFF1148	0.15	-2.2
1,154,500	-		GFF1148	0.16	-0.9
1,154,501	+		GFF1148	0.16	+0.7
1,154,507	+		GFF1148	0.16	+0.4
1,154,507	-		GFF1148	0.16	+0.1
1,154,511	+		GFF1148	0.16	-0.4
1,154,515	-		GFF1148	0.17	-1.2
1,154,519	-		GFF1148	0.17	-0.7
1,154,519	-		GFF1148	0.17	-1.1
1,154,555	+		GFF1148	0.19	-0.3
1,154,555	-		GFF1148	0.19	+0.2
1,154,565	-		GFF1148	0.20	-1.8
1,154,567	+		GFF1148	0.20	-0.3
1,154,580	-		GFF1148	0.21	-1.5
1,154,605	+		GFF1148	0.23	-0.6
1,154,605	+		GFF1148	0.23	+1.3
1,154,605	+		GFF1148	0.23	-0.1
1,154,613	-		GFF1148	0.23	-1.5
1,154,633	-		GFF1148	0.25	-1.3
1,154,635	-		GFF1148	0.25	-1.5
1,154,638	-		GFF1148	0.25	-1.0
1,154,662	+		GFF1148	0.27	+0.9
1,154,714	+		GFF1148	0.30	-2.0
1,154,719	+		GFF1148	0.31	-0.8
1,154,719	+		GFF1148	0.31	-0.6
1,154,719	+		GFF1148	0.31	-2.5
1,154,719	+		GFF1148	0.31	-0.8
1,154,719	+		GFF1148	0.31	-0.6
1,154,719	+		GFF1148	0.31	-0.1
1,154,719	+		GFF1148	0.31	-0.4
1,154,722	-		GFF1148	0.31	-1.6
1,154,722	-		GFF1148	0.31	+0.2
1,154,727	-		GFF1148	0.31	-0.6
1,154,758	+		GFF1148	0.33	-0.6
1,154,766	-		GFF1148	0.34	+0.7
1,154,766	-		GFF1148	0.34	-0.6
1,154,766	-		GFF1148	0.34	-1.9
1,154,807	+		GFF1148	0.37	-0.7
1,154,807	+		GFF1148	0.37	-0.8
1,154,807	+		GFF1148	0.37	-1.9
1,154,815	-		GFF1148	0.37	-0.4
1,154,815	-		GFF1148	0.37	+0.7
1,154,815	-		GFF1148	0.37	+0.2
1,154,815	-		GFF1148	0.37	-1.0
1,154,815	-		GFF1148	0.37	+0.1
1,154,815	-		GFF1148	0.37	+0.7
1,154,815	-		GFF1148	0.37	+0.7
1,154,844	-		GFF1148	0.39	+0.9
1,154,867	+		GFF1148	0.41	-0.3
1,154,868	-		GFF1148	0.41	-0.9
1,154,895	+		GFF1148	0.43	-0.4
1,154,903	-		GFF1148	0.44	+0.0
1,154,908	-		GFF1148	0.44	+0.2
1,154,909	+		GFF1148	0.44	+1.8
1,154,917	-		GFF1148	0.44	+0.8
1,154,927	+		GFF1148	0.45	-1.9
1,154,927	+		GFF1148	0.45	-0.9
1,154,935	-		GFF1148	0.46	+1.3
1,154,935	-		GFF1148	0.46	+0.4
1,154,945	-		GFF1148	0.46	-0.7
1,154,954	-		GFF1148	0.47	-1.3
1,154,973	-		GFF1148	0.48	-2.1
1,154,973	-		GFF1148	0.48	+0.5
1,154,999	+		GFF1148	0.50	-1.5
1,155,009	+		GFF1148	0.51	-1.4
1,155,012	-		GFF1148	0.51	+0.4
1,155,016	+		GFF1148	0.51	-0.4
1,155,017	+		GFF1148	0.51	-1.4
1,155,017	+		GFF1148	0.51	+0.6
1,155,019	-		GFF1148	0.52	+0.4
1,155,024	-		GFF1148	0.52	+0.7
1,155,025	-		GFF1148	0.52	-0.7
1,155,025	-		GFF1148	0.52	+1.2
1,155,025	-		GFF1148	0.52	-0.1
1,155,025	-		GFF1148	0.52	-1.0
1,155,026	+		GFF1148	0.52	-1.8
1,155,044	+		GFF1148	0.53	-1.3
1,155,044	-		GFF1148	0.53	+0.3
1,155,061	+		GFF1148	0.54	-0.9
1,155,088	+		GFF1148	0.56	-0.2
1,155,090	+		GFF1148	0.56	-1.1
1,155,090	+		GFF1148	0.56	-1.5
1,155,095	+		GFF1148	0.57	-1.1
1,155,095	+		GFF1148	0.57	-0.4
1,155,098	-		GFF1148	0.57	+0.7
1,155,103	-		GFF1148	0.57	-1.6
1,155,142	+		GFF1148	0.60	-0.8
1,155,164	+		GFF1148	0.62	+0.5
1,155,167	-		GFF1148	0.62	-1.2
1,155,167	-		GFF1148	0.62	+0.6
1,155,167	-		GFF1148	0.62	+0.4
1,155,173	-		GFF1148	0.62	-0.9
1,155,173	-		GFF1148	0.62	-1.6
1,155,173	-		GFF1148	0.62	-1.8
1,155,177	+		GFF1148	0.63	-1.5
1,155,192	-		GFF1148	0.64	-1.3
1,155,200	+		GFF1148	0.64	-1.6
1,155,201	+		GFF1148	0.64	-0.3
1,155,209	-		GFF1148	0.65	-1.5
1,155,216	+		GFF1148	0.65	-0.3
1,155,224	-		GFF1148	0.66	-1.2
1,155,234	-		GFF1148	0.66	+1.4
1,155,282	-		GFF1148	0.70	-0.6
1,155,293	+		GFF1148	0.71	-1.7
1,155,295	-		GFF1148	0.71	-0.5
1,155,324	+		GFF1148	0.73	+0.9
1,155,324	+		GFF1148	0.73	+0.1
1,155,333	+		GFF1148	0.73	+0.6
1,155,341	-		GFF1148	0.74	+0.3
1,155,355	-		GFF1148	0.75	-0.4
1,155,362	+		GFF1148	0.75	-1.7
1,155,364	+		GFF1148	0.75	+0.2
1,155,372	-		GFF1148	0.76	-0.1
1,155,374	-		GFF1148	0.76	-0.1
1,155,374	-		GFF1148	0.76	+0.4
1,155,427	+		GFF1148	0.80	-0.4
1,155,427	+		GFF1148	0.80	+0.2
1,155,427	+		GFF1148	0.80	-0.4
1,155,427	+		GFF1148	0.80	-1.7
1,155,435	-		GFF1148	0.80	-0.7
1,155,446	+		GFF1148	0.81	+0.4
1,155,451	+		GFF1148	0.81	-0.4
1,155,451	+		GFF1148	0.81	+0.3
1,155,451	+		GFF1148	0.81	-0.8
1,155,459	-		GFF1148	0.82	-0.7
1,155,459	-		GFF1148	0.82	-1.5
1,155,459	-		GFF1148	0.82	-0.5
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