Strain Fitness in Sphingobium sp. HT1-2 around GFF1104

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,105,826	-		GFF1103	0.64	-0.5
1,105,826	-		GFF1103	0.64	-0.2
1,105,826	-		GFF1103	0.64	+0.5
1,105,826	-		GFF1103	0.64	-0.6
1,105,826	-		GFF1103	0.64	-2.0
1,105,828	+		GFF1103	0.64	+0.4
1,105,828	+		GFF1103	0.64	+0.7
1,105,828	+		GFF1103	0.64	+0.8
1,105,828	+		GFF1103	0.64	-0.5
1,105,828	+		GFF1103	0.64	-0.6
1,105,828	+		GFF1103	0.64	-0.4
1,105,828	+		GFF1103	0.64	-0.8
1,105,832	+		GFF1103	0.64	-0.2
1,105,836	-		GFF1103	0.64	-0.2
1,105,836	-		GFF1103	0.64	-0.2
1,105,836	-		GFF1103	0.64	-0.6
1,105,840	-		GFF1103	0.64	+0.4
1,105,845	+		GFF1103	0.64	-0.4
1,105,854	+		GFF1103	0.65	-1.6
1,105,864	+		GFF1103	0.65	-0.5
1,105,864	+		GFF1103	0.65	+0.3
1,105,864	+		GFF1103	0.65	-0.4
1,105,864	+		GFF1103	0.65	+0.7
1,105,869	+		GFF1103	0.65	-0.4
1,105,869	-		GFF1103	0.65	-0.3
1,105,872	-		GFF1103	0.65	-1.3
1,105,872	-		GFF1103	0.65	-0.5
1,105,877	-		GFF1103	0.66	-0.6
1,105,877	-		GFF1103	0.66	-1.2
1,105,877	-		GFF1103	0.66	-0.8
1,105,877	-		GFF1103	0.66	+1.3
1,105,877	-		GFF1103	0.66	-0.5
1,105,879	+		GFF1103	0.66	+0.2
1,105,879	+		GFF1103	0.66	-0.3
1,105,882	-		GFF1103	0.66	-0.7
1,105,882	-		GFF1103	0.66	+0.6
1,105,887	-		GFF1103	0.66	-0.7
1,105,887	-		GFF1103	0.66	-0.5
1,105,892	+		GFF1103	0.66	-0.4
1,105,900	-		GFF1103	0.66	-0.3
1,105,904	+		GFF1103	0.67	+0.7
1,105,904	+		GFF1103	0.67	+1.6
1,105,904	+		GFF1103	0.67	-2.1
1,105,904	+		GFF1103	0.67	-0.2
1,105,907	-		GFF1103	0.67	+0.6
1,105,909	+		GFF1103	0.67	-0.2
1,105,909	+		GFF1103	0.67	+0.8
1,105,909	+		GFF1103	0.67	-0.9
1,105,909	+		GFF1103	0.67	-1.6
1,105,912	-		GFF1103	0.67	-2.2
1,105,912	-		GFF1103	0.67	-0.2
1,105,912	-		GFF1103	0.67	+0.4
1,105,912	-		GFF1103	0.67	-1.5
1,105,916	+		GFF1103	0.67	-1.4
1,105,917	-		GFF1103	0.67	-0.5
1,105,918	-		GFF1103	0.67	-0.8
1,105,918	-		GFF1103	0.67	+0.3
1,105,918	-		GFF1103	0.67	-0.6
1,105,943	-		GFF1103	0.68	+0.4
1,105,957	+		GFF1103	0.69	+1.5
1,105,962	+		GFF1103	0.69	+0.2
1,105,962	+		GFF1103	0.69	-0.3
1,105,965	-		GFF1103	0.69	-1.2
1,105,967	+		GFF1103	0.69	+0.4
1,105,967	+		GFF1103	0.69	+0.1
1,105,967	+		GFF1103	0.69	-0.8
1,105,973	-		GFF1103	0.69	+0.8
1,105,975	-		GFF1103	0.69	+1.4
1,106,004	-		GFF1103	0.70	+0.5
1,106,165	+		GFF1103	0.77	-0.6
1,106,167	+		GFF1103	0.77	+1.4
1,106,173	-		GFF1103	0.77	-0.1
1,106,175	-		GFF1103	0.77	-0.3
1,106,290	-		GFF1103	0.81	-1.3
1,106,314	-		GFF1103	0.82	+0.2
1,106,323	+		GFF1103	0.83	-0.8
1,106,395	+		GFF1103	0.85	+1.2
1,106,400	+		GFF1103	0.86	-1.9
1,106,428	+		GFF1103	0.87	+1.5
1,106,435	-		GFF1103	0.87	+0.6
1,106,436	-		GFF1103	0.87	-0.6
1,106,482	-		GFF1103	0.89	-1.5
1,106,550	+				+1.0
1,106,551	+				+0.5
1,106,591	-				-0.1
1,106,591	-				+0.4
1,106,594	+				-0.2
1,106,596	+				-1.4
1,106,596	+				-0.7
1,106,604	-				-0.2
1,106,604	-				+0.2
1,106,604	-				-0.7
1,106,604	-				+0.7
1,106,607	+				-0.8
1,106,607	+				-0.5
1,106,610	+				-0.9
1,106,610	+				-0.8
1,106,610	+				-0.7
1,106,610	+				-0.7
1,106,610	+				-0.3
1,106,612	+				+0.4
1,106,615	-				-0.4
1,106,617	+				+0.7
1,106,618	-				-1.0
1,106,620	-				-2.0
1,106,620	-				-0.8
1,106,634	+				-0.2
1,106,650	+				-0.5
1,106,658	-				-0.9
1,106,671	+				+1.7
1,106,920	+				+1.1
1,106,928	-				+0.6
1,106,942	+				+0.3
1,107,031	+		GFF1104	0.15	+0.6
1,107,033	+		GFF1104	0.15	-0.6
1,107,047	+		GFF1104	0.16	+0.1
1,107,047	+		GFF1104	0.16	-1.4
1,107,055	-		GFF1104	0.16	-1.6
1,107,062	-		GFF1104	0.17	-1.0
1,107,062	-		GFF1104	0.17	-1.3
1,107,097	+		GFF1104	0.19	-1.6
1,107,097	+		GFF1104	0.19	-0.6
1,107,097	+		GFF1104	0.19	-0.3
1,107,099	+		GFF1104	0.20	-1.1
1,107,105	-		GFF1104	0.20	-1.5
1,107,107	-		GFF1104	0.20	-0.6
1,107,114	+		GFF1104	0.21	-0.4
1,107,114	+		GFF1104	0.21	-0.6
1,107,119	+		GFF1104	0.21	+0.8
1,107,119	+		GFF1104	0.21	-0.6
1,107,122	-		GFF1104	0.21	+1.1
1,107,122	-		GFF1104	0.21	-1.2
1,107,122	-		GFF1104	0.21	-0.9
1,107,127	-		GFF1104	0.22	+0.7
1,107,134	+		GFF1104	0.22	-0.4
1,107,142	-		GFF1104	0.23	-0.9
1,107,156	-		GFF1104	0.24	-0.3
1,107,194	+		GFF1104	0.26	-1.4
1,107,202	-		GFF1104	0.27	-1.3
1,107,202	-		GFF1104	0.27	-0.2
1,107,234	+		GFF1104	0.29	+0.9
1,107,242	-		GFF1104	0.30	-1.7
1,107,253	+		GFF1104	0.31	-0.4
1,107,253	+		GFF1104	0.31	-1.4
1,107,258	+		GFF1104	0.31	-0.2
1,107,258	+		GFF1104	0.31	-0.4
1,107,292	-		GFF1104	0.33	-0.8
1,107,294	+		GFF1104	0.33	-0.1
1,107,297	-		GFF1104	0.34	+1.1
1,107,316	+		GFF1104	0.35	+0.0
1,107,317	+		GFF1104	0.35	-0.5
1,107,324	-		GFF1104	0.36	-0.3
1,107,428	+		GFF1104	0.43	-0.3
1,107,431	-		GFF1104	0.43	-1.4
1,107,518	-		GFF1104	0.49	+0.2
1,107,606	+		GFF1104	0.56	-0.9
1,107,606	+		GFF1104	0.56	-1.5
1,107,635	-		GFF1104	0.58	-1.4
1,107,648	+		GFF1104	0.59	+0.8
1,107,661	-		GFF1104	0.60	-0.4
1,107,670	+		GFF1104	0.60	+0.3
1,107,681	+		GFF1104	0.61	-0.0
1,107,681	+		GFF1104	0.61	-0.5
1,107,681	+		GFF1104	0.61	+1.3
1,107,686	+		GFF1104	0.62	+1.1
1,107,686	+		GFF1104	0.62	-1.0
1,107,689	-		GFF1104	0.62	-0.4
1,107,694	-		GFF1104	0.62	-0.5
1,107,703	+		GFF1104	0.63	-0.4
1,107,750	+		GFF1104	0.66	-1.5
1,107,752	+		GFF1104	0.66	+0.1
1,107,757	+		GFF1104	0.67	-0.2
1,107,765	-		GFF1104	0.67	-0.6
1,107,765	-		GFF1104	0.67	-0.3
1,107,765	-		GFF1104	0.67	-1.2
1,107,936	+		GFF1104	0.79	-0.2
1,108,323	+				+1.1
1,108,323	+				-0.2
1,108,602	+				-0.6
1,108,606	-				+1.7
1,108,620	-				-0.3
1,108,621	-				-1.7
1,108,644	+				-0.7
1,108,644	+				+0.0
1,108,652	-				-0.3
1,108,656	-				-1.6
1,108,662	-				-0.9
1,108,662	-				+0.5
1,108,676	+				-1.5
1,108,677	+				+0.1
1,108,699	-				+0.6
1,108,703	+				+0.4
1,108,720	-				-1.2
1,108,721	+				-0.4
1,108,737	-				+0.8
1,108,739	-				+0.3
1,108,798	+		GFF1105	0.27	-1.3
1,108,800	+		GFF1105	0.29	+0.4
1,108,800	+		GFF1105	0.29	-0.4
1,108,800	+		GFF1105	0.29	-0.4
1,108,808	-		GFF1105	0.33	-1.0
1,108,845	+		GFF1105	0.55	-1.4
1,108,845	+		GFF1105	0.55	+0.8
1,108,846	+		GFF1105	0.56	+0.6
1,108,853	-		GFF1105	0.60	-1.5
1,108,854	+		GFF1105	0.60	+0.7
1,108,854	-		GFF1105	0.60	+1.2
1,108,862	-		GFF1105	0.65	-0.3
1,108,867	+		GFF1105	0.68	-0.5
1,108,867	+		GFF1105	0.68	+1.7
1,108,867	+		GFF1105	0.68	-0.6
1,108,867	+		GFF1105	0.68	+1.1
1,108,867	+		GFF1105	0.68	-0.7
1,108,867	+		GFF1105	0.68	-1.2
1,108,867	+		GFF1105	0.68	-0.5
1,108,875	-		GFF1105	0.73	+0.1
1,108,875	-		GFF1105	0.73	-0.9
1,108,879	+		GFF1105	0.75	-1.1
1,108,882	-		GFF1105	0.77	-1.2
1,108,882	-		GFF1105	0.77	-2.3
1,108,882	-		GFF1105	0.77	+0.7
1,108,887	-		GFF1105	0.80	-0.5
1,108,887	-		GFF1105	0.80	-1.0
1,108,887	-		GFF1105	0.80	-1.4
1,108,893	+		GFF1105	0.83	-0.8
1,108,893	+		GFF1105	0.83	-1.6
1,108,893	+		GFF1105	0.83	-0.5
1,108,893	+		GFF1105	0.83	+0.1
1,108,895	-		GFF1105	0.84	-0.4
1,108,898	+		GFF1105	0.86	+0.0
1,108,901	-		GFF1105	0.88	-0.6
1,108,901	-		GFF1105	0.88	-0.4
1,108,901	-		GFF1105	0.88	+0.7
1,108,901	-		GFF1105	0.88	-2.4
1,108,906	+				-0.3
1,108,906	-				-0.4
1,108,911	+				+1.7
1,108,911	+				-1.6
1,108,931	+				+0.1
1,108,968	+				+0.8
1,108,968	+				+0.7
1,108,968	+				+0.4
1,108,968	+				+0.3
1,108,968	+				-1.5
1,108,968	+				-0.8
1,108,968	+				-1.7
1,108,968	+				-0.4
1,108,968	+				+0.6
1,108,968	+				+1.0
1,108,976	-				-1.4
1,108,976	-				-2.7
1,108,976	-				-0.5
1,108,976	-				+0.1
1,108,976	-				+1.4
1,108,976	-				-0.3
1,108,976	-				+0.1
1,108,976	-				+0.4
1,108,976	-				-0.9
1,108,977	-				-0.6
1,108,989	+				+0.4
1,108,997	-				+0.2
1,109,021	+				+0.3
1,109,050	-				-0.6
1,109,058	+				-0.6
1,109,058	+				-1.1
1,109,063	+				+0.5
1,109,064	-				-1.2
1,109,071	-				+0.4
1,109,093	+				+0.3
1,109,109	+				+0.1
1,109,109	+				-0.9
1,109,109	+				-1.4
1,109,109	+				+0.8
1,109,109	+				-0.3
1,109,109	+				-2.3
1,109,110	+				-0.2
1,109,114	+				+1.0
1,109,114	+				-1.2
1,109,114	+				-1.9
1,109,117	-				-1.8
1,109,117	-				+0.1
1,109,117	-				-2.0
1,109,117	-				-0.5
1,109,117	-				+0.6
1,109,118	-		GFF1106	0.10	-1.8
1,109,122	-		GFF1106	0.11	-0.5
1,109,129	+		GFF1106	0.13	-1.4
1,109,129	+		GFF1106	0.13	-0.6
1,109,135	+		GFF1106	0.14	-0.1
1,109,135	+		GFF1106	0.14	-1.1
1,109,135	+		GFF1106	0.14	-1.2
1,109,135	+		GFF1106	0.14	-1.4
1,109,135	+		GFF1106	0.14	+0.9
1,109,135	+		GFF1106	0.14	+0.4
1,109,135	+		GFF1106	0.14	-1.2
1,109,143	-		GFF1106	0.16	-1.0
1,109,143	-		GFF1106	0.16	+0.2
1,109,143	-		GFF1106	0.16	-0.9
1,109,143	-		GFF1106	0.16	-2.3
1,109,143	-		GFF1106	0.16	+1.8
1,109,143	-		GFF1106	0.16	-1.3
1,109,174	-		GFF1106	0.23	-0.2
1,109,195	+		GFF1106	0.27	-0.4
1,109,203	-		GFF1106	0.29	-0.7
1,109,220	+		GFF1106	0.33	+1.2