Strain Fitness in Sphingobium sp. HT1-2 around GFF1

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1 and GFF2 are separated by 66 nucleotides GFF1 - hypothetical protein, at 285 to 1,115 GFF1 GFF2 - hypothetical protein, at 1,182 to 1,940 GFF2 Position (kb) 0 1 2Strain fitness (log2 ratio) -2 -1 0 1 2at 0.134 kb on + strandat 0.134 kb on + strandat 0.134 kb on + strandat 0.134 kb on + strandat 0.142 kb on + strandat 0.150 kb on + strandat 0.155 kb on + strandat 0.162 kb on + strandat 0.162 kb on + strandat 0.215 kb on - strandat 0.225 kb on - strandat 0.225 kb on - strandat 0.225 kb on - strandat 0.225 kb on - strandat 0.299 kb on + strandat 0.299 kb on + strandat 0.299 kb on + strandat 0.301 kb on + strandat 0.307 kb on - strandat 0.339 kb on - strandat 0.356 kb on - strandat 0.358 kb on + strandat 0.379 kb on + strand, within GFF1at 0.468 kb on + strand, within GFF1at 0.468 kb on + strand, within GFF1at 0.527 kb on - strand, within GFF1at 0.628 kb on + strand, within GFF1at 0.628 kb on + strand, within GFF1at 0.628 kb on + strand, within GFF1at 0.663 kb on + strand, within GFF1at 0.663 kb on + strand, within GFF1at 0.663 kb on + strand, within GFF1at 0.663 kb on + strand, within GFF1at 0.671 kb on - strand, within GFF1at 0.671 kb on - strand, within GFF1at 0.671 kb on - strand, within GFF1at 0.697 kb on + strand, within GFF1at 0.705 kb on - strand, within GFF1at 0.705 kb on - strand, within GFF1at 0.709 kb on + strand, within GFF1at 0.717 kb on - strand, within GFF1at 0.741 kb on + strand, within GFF1at 0.743 kb on + strand, within GFF1at 0.751 kb on - strand, within GFF1at 0.751 kb on - strand, within GFF1at 0.751 kb on - strand, within GFF1at 0.751 kb on - strand, within GFF1at 0.762 kb on + strand, within GFF1at 0.767 kb on - strand, within GFF1at 0.772 kb on + strand, within GFF1at 0.772 kb on + strand, within GFF1at 0.808 kb on + strand, within GFF1at 0.808 kb on + strand, within GFF1at 0.808 kb on + strand, within GFF1at 0.816 kb on - strand, within GFF1at 0.841 kb on - strand, within GFF1at 0.857 kb on - strand, within GFF1at 0.882 kb on + strand, within GFF1at 0.882 kb on - strand, within GFF1at 0.887 kb on + strand, within GFF1at 0.890 kb on - strand, within GFF1at 0.895 kb on - strand, within GFF1at 0.895 kb on - strand, within GFF1at 0.931 kb on + strand, within GFF1at 0.931 kb on + strand, within GFF1at 0.939 kb on - strand, within GFF1at 0.947 kb on - strand, within GFF1at 0.956 kb on + strand, within GFF1at 0.964 kb on - strand, within GFF1at 0.964 kb on - strand, within GFF1at 0.964 kb on - strand, within GFF1at 0.964 kb on - strand, within GFF1at 0.964 kb on - strand, within GFF1at 0.966 kb on - strand, within GFF1at 1.003 kb on - strand, within GFF1at 1.134 kb on - strandat 1.152 kb on - strandat 1.170 kb on - strandat 1.258 kb on - strand, within GFF2at 1.341 kb on + strand, within GFF2at 1.359 kb on + strand, within GFF2at 1.359 kb on + strand, within GFF2at 1.367 kb on - strand, within GFF2at 1.368 kb on + strand, within GFF2at 1.406 kb on + strand, within GFF2at 1.406 kb on + strand, within GFF2at 1.412 kb on - strand, within GFF2at 1.414 kb on - strand, within GFF2at 1.427 kb on - strand, within GFF2at 1.438 kb on - strand, within GFF2at 1.469 kb on - strand, within GFF2at 1.495 kb on - strand, within GFF2at 1.518 kb on - strand, within GFF2at 1.611 kb on - strand, within GFF2at 1.637 kb on - strand, within GFF2at 1.656 kb on + strand, within GFF2at 1.664 kb on - strand, within GFF2at 1.664 kb on - strand, within GFF2at 1.664 kb on - strand, within GFF2at 1.748 kb on + strand, within GFF2at 1.751 kb on - strand, within GFF2at 1.751 kb on - strand, within GFF2at 1.766 kb on - strand, within GFF2at 1.786 kb on + strand, within GFF2at 1.896 kb on + strandat 1.904 kb on - strandat 2.071 kb on + strandat 2.071 kb on + strandat 2.071 kb on + strandat 2.071 kb on + strandat 2.071 kb on + strandat 2.071 kb on + strandat 2.071 kb on + strandat 2.071 kb on + strandat 2.079 kb on - strandat 2.079 kb on - strandat 2.079 kb on - strandat 2.079 kb on - strandat 2.079 kb on - strandat 2.079 kb on - strandat 2.079 kb on - strandat 2.079 kb on - strandat 2.079 kb on - strandat 2.079 kb on - strandat 2.079 kb on - strandat 2.079 kb on - strandat 2.079 kb on - strandat 2.081 kb on + strandat 2.088 kb on + strandat 2.096 kb on - strandat 2.113 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate
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134 + +0.4
134 + -0.2
134 + +1.7
134 + +0.4
142 + -0.1
150 + +1.3
155 + +0.9
162 + -0.3
162 + +1.1
215 - +1.6
225 - +1.0
225 - +0.9
225 - +0.5
225 - -0.6
299 + -0.2
299 + +0.6
299 + -1.0
301 + +1.2
307 - +0.9
339 - +0.1
356 - -1.6
358 + -0.6
379 + GFF1 0.11 +0.9
468 + GFF1 0.22 +0.2
468 + GFF1 0.22 +1.4
527 - GFF1 0.29 +1.0
628 + GFF1 0.41 +0.4
628 + GFF1 0.41 +0.4
628 + GFF1 0.41 +0.1
663 + GFF1 0.45 -0.2
663 + GFF1 0.45 -1.6
663 + GFF1 0.45 +0.7
663 + GFF1 0.45 +0.4
671 - GFF1 0.46 -1.0
671 - GFF1 0.46 +0.1
671 - GFF1 0.46 -0.1
697 + GFF1 0.50 -1.9
705 - GFF1 0.51 +1.0
705 - GFF1 0.51 +1.5
709 + GFF1 0.51 +0.8
717 - GFF1 0.52 -0.7
741 + GFF1 0.55 +0.4
743 + GFF1 0.55 -0.2
751 - GFF1 0.56 +1.3
751 - GFF1 0.56 -0.4
751 - GFF1 0.56 -0.8
751 - GFF1 0.56 +0.1
762 + GFF1 0.57 -0.8
767 - GFF1 0.58 -1.3
772 + GFF1 0.59 -0.5
772 + GFF1 0.59 -0.0
808 + GFF1 0.63 -0.3
808 + GFF1 0.63 -1.9
808 + GFF1 0.63 -0.4
816 - GFF1 0.64 +1.2
841 - GFF1 0.67 -0.1
857 - GFF1 0.69 +1.0
882 + GFF1 0.72 -0.1
882 - GFF1 0.72 +0.7
887 + GFF1 0.72 +0.4
890 - GFF1 0.73 -1.3
895 - GFF1 0.73 +0.5
895 - GFF1 0.73 -0.7
931 + GFF1 0.78 +1.4
931 + GFF1 0.78 +0.6
939 - GFF1 0.79 -1.0
947 - GFF1 0.80 -0.5
956 + GFF1 0.81 +0.3
964 - GFF1 0.82 +0.1
964 - GFF1 0.82 +0.8
964 - GFF1 0.82 -0.7
964 - GFF1 0.82 -1.1
964 - GFF1 0.82 -0.9
966 - GFF1 0.82 +1.2
1,003 - GFF1 0.86 +0.8
1,134 - -1.0
1,152 - +1.2
1,170 - +0.5
1,258 - GFF2 0.10 -0.7
1,341 + GFF2 0.21 -1.4
1,359 + GFF2 0.23 +0.9
1,359 + GFF2 0.23 +0.6
1,367 - GFF2 0.24 +1.7
1,368 + GFF2 0.25 +1.0
1,406 + GFF2 0.30 +0.5
1,406 + GFF2 0.30 +0.3
1,412 - GFF2 0.30 +0.5
1,414 - GFF2 0.31 -0.3
1,427 - GFF2 0.32 +1.0
1,438 - GFF2 0.34 -1.0
1,469 - GFF2 0.38 +0.5
1,495 - GFF2 0.41 -0.8
1,518 - GFF2 0.44 -1.4
1,611 - GFF2 0.57 +0.1
1,637 - GFF2 0.60 +0.7
1,656 + GFF2 0.62 +0.5
1,664 - GFF2 0.64 +0.8
1,664 - GFF2 0.64 +1.3
1,664 - GFF2 0.64 +1.3
1,748 + GFF2 0.75 -1.0
1,751 - GFF2 0.75 +1.8
1,751 - GFF2 0.75 +1.9
1,766 - GFF2 0.77 +0.5
1,786 + GFF2 0.80 +0.7
1,896 + -0.6
1,904 - +0.4
2,071 + -1.0
2,071 + -0.9
2,071 + +1.3
2,071 + +0.2
2,071 + -0.7
2,071 + +0.9
2,071 + -1.0
2,071 + -0.1
2,079 - +0.3
2,079 - -0.1
2,079 - -0.6
2,079 - -2.0
2,079 - -1.0
2,079 - -0.4
2,079 - -1.3
2,079 - -2.0
2,079 - -0.2
2,079 - -0.5
2,079 - -1.3
2,079 - +1.1
2,079 - +0.1
2,081 + -1.3
2,088 + +0.3
2,096 - +1.3
2,113 - +1.3

Or see this region's nucleotide sequence