Strain Fitness in Sphingobium sp. HT1-2 around GFF978

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
978,138	-				-1.5
978,141	+				+0.3
978,144	-				-0.9
978,149	-				-0.3
978,149	-				-1.2
978,151	+				-0.2
978,161	+				+1.1
978,204	-				-0.9
978,209	+				+0.7
978,209	+				-0.3
978,210	+				-0.7
978,217	+				-0.2
978,217	+				-0.9
978,217	+				+0.1
978,218	-				+0.2
978,222	+				+0.2
978,225	-				+0.2
978,225	-				-1.4
978,225	-				-1.2
978,244	+				+0.9
978,252	-				-0.5
978,252	-				+1.0
978,252	-				+1.1
978,252	-				-0.9
978,262	+				-1.0
978,267	+				+0.6
978,269	-				-1.5
978,270	-				-1.1
978,275	-				+0.8
978,275	-				+0.0
978,328	+				-0.6
978,354	+				-0.4
978,364	-				-0.5
978,382	-				-0.4
978,411	-		GFF978	0.12	+0.2
978,419	+		GFF978	0.12	+0.3
978,419	+		GFF978	0.12	-2.6
978,419	+		GFF978	0.12	+0.1
978,427	-		GFF978	0.13	-0.6
978,427	-		GFF978	0.13	+0.4
978,427	-		GFF978	0.13	-0.0
978,427	-		GFF978	0.13	-0.4
978,432	+		GFF978	0.13	-0.2
978,479	-		GFF978	0.16	+0.4
978,479	-		GFF978	0.16	+0.6
978,510	+		GFF978	0.17	-0.4
978,512	+		GFF978	0.17	-0.1
978,548	+		GFF978	0.20	-1.9
978,563	+		GFF978	0.20	-0.4
978,563	+		GFF978	0.20	-0.8
978,569	+		GFF978	0.21	+0.4
978,570	+		GFF978	0.21	-0.2
978,570	+		GFF978	0.21	-0.2
978,570	+		GFF978	0.21	-1.3
978,571	-		GFF978	0.21	-0.3
978,578	-		GFF978	0.21	-0.6
978,578	-		GFF978	0.21	-1.4
978,578	-		GFF978	0.21	-0.8
978,578	-		GFF978	0.21	-1.3
978,578	-		GFF978	0.21	+0.6
978,578	-		GFF978	0.21	-0.9
978,582	+		GFF978	0.22	-1.3
978,582	+		GFF978	0.22	-2.0
978,582	+		GFF978	0.22	-1.2
978,582	+		GFF978	0.22	-0.7
978,582	+		GFF978	0.22	+0.2
978,582	+		GFF978	0.22	+0.9
978,582	+		GFF978	0.22	+1.0
978,582	+		GFF978	0.22	-0.7
978,582	+		GFF978	0.22	-1.2
978,582	+		GFF978	0.22	+0.0
978,590	-		GFF978	0.22	-0.6
978,590	-		GFF978	0.22	+0.3
978,590	-		GFF978	0.22	+2.1
978,590	-		GFF978	0.22	-0.7
978,590	-		GFF978	0.22	-1.2
978,595	-		GFF978	0.22	+0.4
978,626	+		GFF978	0.24	-1.2
978,646	+		GFF978	0.25	-0.5
978,668	+		GFF978	0.27	+0.7
978,668	+		GFF978	0.27	-1.8
978,668	+		GFF978	0.27	-0.7
978,668	+		GFF978	0.27	+0.4
978,668	+		GFF978	0.27	-0.6
978,668	+		GFF978	0.27	-0.8
978,668	+		GFF978	0.27	+0.1
978,668	+		GFF978	0.27	+0.5
978,668	+		GFF978	0.27	+0.7
978,668	+		GFF978	0.27	-0.2
978,668	+		GFF978	0.27	+0.5
978,668	+		GFF978	0.27	-0.6
978,668	+		GFF978	0.27	-0.8
978,668	+		GFF978	0.27	-1.3
978,668	+		GFF978	0.27	-1.4
978,671	-		GFF978	0.27	+0.4
978,673	+		GFF978	0.27	-1.4
978,676	-		GFF978	0.27	-0.6
978,676	-		GFF978	0.27	+1.3
978,676	-		GFF978	0.27	-0.5
978,676	-		GFF978	0.27	-0.7
978,676	-		GFF978	0.27	+1.4
978,676	-		GFF978	0.27	-0.9
978,676	-		GFF978	0.27	-2.0
978,676	-		GFF978	0.27	-1.2
978,676	-		GFF978	0.27	+0.4
978,676	-		GFF978	0.27	-0.3
978,676	-		GFF978	0.27	-0.9
978,676	-		GFF978	0.27	-0.3
978,679	+		GFF978	0.27	-1.7
978,681	-		GFF978	0.27	-0.9
978,683	+		GFF978	0.27	-1.1
978,683	+		GFF978	0.27	-1.3
978,683	+		GFF978	0.27	+1.3
978,683	+		GFF978	0.27	-1.6
978,683	+		GFF978	0.27	-0.5
978,683	+		GFF978	0.27	-1.2
978,683	+		GFF978	0.27	-0.8
978,683	+		GFF978	0.27	+0.6
978,683	+		GFF978	0.27	+0.4
978,687	-		GFF978	0.28	-1.3
978,691	-		GFF978	0.28	+0.1
978,691	-		GFF978	0.28	+0.3
978,691	-		GFF978	0.28	-0.1
978,691	-		GFF978	0.28	-0.5
978,691	-		GFF978	0.28	-0.7
978,691	-		GFF978	0.28	-2.1
978,712	-		GFF978	0.29	+0.1
978,715	+		GFF978	0.29	+0.4
978,715	+		GFF978	0.29	-1.0
978,723	-		GFF978	0.30	+0.8
978,723	-		GFF978	0.30	-0.4
978,723	-		GFF978	0.30	-0.6
978,732	+		GFF978	0.30	-0.9
978,744	-		GFF978	0.31	-0.3
978,764	-		GFF978	0.32	+0.4
978,793	+		GFF978	0.34	-0.8
978,805	-		GFF978	0.35	+0.4
978,807	+		GFF978	0.35	+0.6
978,823	-		GFF978	0.36	-0.9
978,832	-		GFF978	0.36	-2.7
978,834	+		GFF978	0.36	-0.6
978,842	-		GFF978	0.37	+0.2
978,863	+		GFF978	0.38	-0.4
978,863	+		GFF978	0.38	-0.4
978,863	+		GFF978	0.38	+1.1
978,870	-		GFF978	0.38	+0.0
978,871	-		GFF978	0.38	+0.9
978,871	-		GFF978	0.38	-0.2
978,871	-		GFF978	0.38	-1.0
978,871	-		GFF978	0.38	-2.5
978,871	-		GFF978	0.38	-0.9
978,885	+		GFF978	0.39	+0.1
978,895	+		GFF978	0.40	+0.6
978,895	+		GFF978	0.40	-0.3
978,895	+		GFF978	0.40	-1.3
978,895	+		GFF978	0.40	-1.2
978,895	+		GFF978	0.40	-1.1
978,895	+		GFF978	0.40	-1.4
978,895	+		GFF978	0.40	-0.8
978,895	+		GFF978	0.40	-0.4
978,895	+		GFF978	0.40	+0.6
978,895	+		GFF978	0.40	+0.4
978,895	+		GFF978	0.40	+0.8
978,895	+		GFF978	0.40	-1.3
978,895	+		GFF978	0.40	-0.3
978,895	+		GFF978	0.40	-1.0
978,895	+		GFF978	0.40	-0.3
978,903	-		GFF978	0.40	-0.9
978,903	-		GFF978	0.40	+1.0
978,903	-		GFF978	0.40	-0.8
978,903	-		GFF978	0.40	+0.2
978,903	-		GFF978	0.40	+0.4
978,903	-		GFF978	0.40	-0.6
978,903	-		GFF978	0.40	-0.1
978,903	-		GFF978	0.40	-0.4
978,903	-		GFF978	0.40	-1.7
978,903	-		GFF978	0.40	-0.7
978,903	-		GFF978	0.40	+1.1
978,903	-		GFF978	0.40	-1.3
978,903	-		GFF978	0.40	-0.6
978,903	-		GFF978	0.40	+0.2
978,903	-		GFF978	0.40	+0.3
978,903	-		GFF978	0.40	-1.6
978,920	+		GFF978	0.41	+0.2
978,935	+		GFF978	0.42	-1.0
978,972	+		GFF978	0.44	-0.4
978,994	+		GFF978	0.46	-0.6
978,996	+		GFF978	0.46	-1.4
979,004	+		GFF978	0.46	+0.3
979,030	-		GFF978	0.48	-0.2
979,031	+		GFF978	0.48	-1.1
979,033	+		GFF978	0.48	+0.1
979,033	+		GFF978	0.48	+1.2
979,033	+		GFF978	0.48	-0.5
979,033	+		GFF978	0.48	-1.0
979,033	+		GFF978	0.48	+0.1
979,041	-		GFF978	0.48	-1.6
979,041	-		GFF978	0.48	-1.6
979,041	-		GFF978	0.48	+0.5
979,043	+		GFF978	0.49	-0.6
979,051	-		GFF978	0.49	-0.7
979,081	-		GFF978	0.51	-0.6
979,082	+		GFF978	0.51	-0.9
979,089	+		GFF978	0.51	-0.7
979,089	+		GFF978	0.51	+0.4
979,089	+		GFF978	0.51	-0.7
979,094	+		GFF978	0.52	-1.7
979,094	+		GFF978	0.52	-1.9
979,094	+		GFF978	0.52	+1.0
979,094	+		GFF978	0.52	-0.6
979,094	+		GFF978	0.52	+0.6
979,094	+		GFF978	0.52	-1.2
979,094	+		GFF978	0.52	+1.2
979,097	-		GFF978	0.52	-0.9
979,100	+		GFF978	0.52	-0.2
979,101	+		GFF978	0.52	-1.2
979,101	+		GFF978	0.52	+0.1
979,102	-		GFF978	0.52	-0.3
979,102	-		GFF978	0.52	+0.0
979,109	-		GFF978	0.52	+0.4
979,109	-		GFF978	0.52	-0.2
979,117	-		GFF978	0.53	-0.2
979,121	-		GFF978	0.53	-0.6
979,127	+		GFF978	0.53	+2.4
979,132	+		GFF978	0.54	+0.6
979,132	+		GFF978	0.54	+0.4
979,134	-		GFF978	0.54	+0.2
979,147	+		GFF978	0.55	-0.9
979,147	+		GFF978	0.55	-2.1
979,178	+		GFF978	0.56	-0.2
979,178	+		GFF978	0.56	-1.1
979,178	+		GFF978	0.56	+0.6
979,178	+		GFF978	0.56	+0.3
979,178	+		GFF978	0.56	+1.4
979,178	+		GFF978	0.56	-1.2
979,178	+		GFF978	0.56	-0.3
979,178	+		GFF978	0.56	+0.9
979,178	+		GFF978	0.56	-0.4
979,178	+		GFF978	0.56	+0.1
979,178	+		GFF978	0.56	-0.4
979,178	+		GFF978	0.56	+1.7
979,178	+		GFF978	0.56	-0.9
979,181	-		GFF978	0.57	-0.2
979,186	-		GFF978	0.57	-1.0
979,186	-		GFF978	0.57	-0.7
979,186	-		GFF978	0.57	-3.1
979,186	-		GFF978	0.57	-0.2
979,186	-		GFF978	0.57	-1.4
979,186	-		GFF978	0.57	-1.1
979,190	+		GFF978	0.57	-0.0
979,191	+		GFF978	0.57	-1.2
979,199	-		GFF978	0.58	+1.3
979,201	+		GFF978	0.58	-0.8
979,242	-		GFF978	0.60	-0.4
979,244	+		GFF978	0.60	-0.6
979,252	-		GFF978	0.61	-0.5
979,266	-		GFF978	0.62	-0.0
979,271	+		GFF978	0.62	+0.1
979,275	+		GFF978	0.62	-0.4
979,275	+		GFF978	0.62	+0.7
979,303	+		GFF978	0.64	-1.2
979,313	-		GFF978	0.64	-0.6
979,320	-		GFF978	0.65	-0.2
979,343	+		GFF978	0.66	-0.9
979,345	+		GFF978	0.66	-0.6
979,346	-		GFF978	0.66	-0.6
979,353	-		GFF978	0.67	+0.8
979,353	-		GFF978	0.67	-0.5
979,353	-		GFF978	0.67	-1.7
979,358	-		GFF978	0.67	-1.9
979,380	-		GFF978	0.68	-1.2
979,394	+		GFF978	0.69	-0.6
979,428	-		GFF978	0.71	-0.3
979,431	+		GFF978	0.71	+0.4
979,439	-		GFF978	0.72	-1.1
979,457	-		GFF978	0.73	-0.4
979,468	+		GFF978	0.73	+0.5
979,473	+		GFF978	0.74	-0.4
979,473	+		GFF978	0.74	+0.4
979,473	+		GFF978	0.74	-1.4
979,473	+		GFF978	0.74	+0.7
979,476	-		GFF978	0.74	-0.7
979,480	+		GFF978	0.74	-0.8
979,480	+		GFF978	0.74	+0.5
979,481	-		GFF978	0.74	-0.6
979,481	-		GFF978	0.74	+0.1
979,481	-		GFF978	0.74	-1.7
979,481	-		GFF978	0.74	+0.1
979,481	-		GFF978	0.74	-0.4
979,488	-		GFF978	0.75	-0.9
979,502	-		GFF978	0.75	-1.7
979,509	+		GFF978	0.76	-1.1
979,517	-		GFF978	0.76	-0.4
979,522	-		GFF978	0.77	-1.3
979,525	-		GFF978	0.77	-0.7
979,525	-		GFF978	0.77	-0.6
979,530	+		GFF978	0.77	-0.3
979,538	-		GFF978	0.77	-1.2
979,538	-		GFF978	0.77	-0.2
979,540	+		GFF978	0.78	-0.2
979,548	-		GFF978	0.78	+0.6
979,548	-		GFF978	0.78	+0.3
979,565	+		GFF978	0.79	-0.0
979,585	+		GFF978	0.80	+0.1
979,594	+		GFF978	0.81	-0.5
979,595	+		GFF978	0.81	+0.4
979,595	+		GFF978	0.81	-1.6
979,595	+		GFF978	0.81	+0.6
979,595	+		GFF978	0.81	-0.0
979,601	+		GFF978	0.81	-0.7
979,601	+		GFF978	0.81	+0.5
979,601	+		GFF978	0.81	-0.9
979,603	-		GFF978	0.81	+0.8
979,603	-		GFF978	0.81	-1.4
979,603	-		GFF978	0.81	-0.6
979,603	-		GFF978	0.81	+1.3
979,609	-		GFF978	0.82	-0.6
979,609	-		GFF978	0.82	-1.2
979,610	+		GFF978	0.82	-0.2
979,640	+		GFF978	0.83	-0.1
979,648	-		GFF978	0.84	-0.7
979,664	+		GFF978	0.85	-0.4
979,703	+		GFF978	0.87	+0.2
979,703	+		GFF978	0.87	+0.1
979,711	-		GFF978	0.88	+0.1
979,711	-		GFF978	0.88	-0.0
979,711	-		GFF978	0.88	-0.9
979,711	-		GFF978	0.88	-1.6
979,711	-		GFF978	0.88	+1.1
979,721	-		GFF978	0.88	-1.4
979,730	+		GFF978	0.89	+0.8
979,738	+		GFF978	0.89	-0.6
979,738	-		GFF978	0.89	-1.7
979,750	+		GFF978	0.90	-0.2
979,760	+				-0.1
979,760	+				-0.8
979,816	-				+1.3
979,838	+				-1.1
979,846	-				+0.2
979,858	+				-0.9
979,897	+				-0.1
979,897	+				-0.1
979,897	+				+1.1
979,897	+				-1.7
979,905	-				+0.8
979,905	-				-0.9
979,905	-				+0.7
979,905	-				-1.1
979,917	+				-0.8
979,925	-				+1.6
979,925	-				-1.5
979,931	+				-0.0
979,931	+				-1.6
979,936	+				-0.8
979,941	+				-2.0
979,954	-				-0.3
979,959	-				+1.1
979,980	+				-0.9
979,984	-				-0.9
980,015	+				+0.4
980,021	+		GFF979	0.10	+0.9
980,025	+		GFF979	0.11	-0.4
980,028	+		GFF979	0.12	-0.6
980,028	+		GFF979	0.12	+0.1
980,028	-		GFF979	0.12	+2.3
980,028	-		GFF979	0.12	+1.6
980,029	-		GFF979	0.12	-1.9
980,033	-		GFF979	0.13	-0.3
980,045	+		GFF979	0.15	+0.2
980,060	+		GFF979	0.18	+1.1
980,068	-		GFF979	0.20	-0.1
980,086	-		GFF979	0.23	+0.0
980,106	+		GFF979	0.28	+0.4
980,107	-		GFF979	0.28	+0.4
980,114	-		GFF979	0.29	-2.1
980,135	-		GFF979	0.33	-0.3
980,146	+		GFF979	0.36	-0.4
980,161	-		GFF979	0.39	+0.3
980,171	-		GFF979	0.41	+0.4
980,186	+		GFF979	0.44	-0.1
980,188	+		GFF979	0.44	-0.8
980,188	+		GFF979	0.44	-0.8
980,188	+		GFF979	0.44	+0.4
980,196	-		GFF979	0.46	+1.0
980,196	-		GFF979	0.46	-0.7
980,201	+		GFF979	0.47	+0.4
980,201	+		GFF979	0.47	+1.9
980,201	+		GFF979	0.47	-1.3
980,201	+		GFF979	0.47	+0.5
980,203	+		GFF979	0.47	-0.5
980,203	+		GFF979	0.47	-0.9
980,203	+		GFF979	0.47	-1.4
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