Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF815 and GFF816 overlap by 7 nucleotides GFF816 and GFF817 are separated by 177 nucleotides
GFF815 - Esterase/lipase, at 803,660 to 804,520
GFF815
GFF816 - ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17), at 804,514 to 805,644
GFF816
GFF817 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 805,822 to 807,402
GFF817
Position (kb) 804
805
806 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 803.516 kb on + strand at 803.516 kb on + strand at 803.518 kb on - strand at 803.521 kb on + strand at 803.524 kb on - strand at 803.534 kb on - strand at 803.549 kb on - strand at 803.562 kb on + strand at 803.570 kb on - strand at 803.570 kb on - strand at 803.571 kb on + strand at 803.579 kb on - strand at 803.587 kb on - strand at 803.590 kb on + strand at 803.726 kb on - strand at 803.733 kb on - strand at 803.733 kb on - strand at 803.752 kb on + strand, within GFF815 at 803.752 kb on + strand, within GFF815 at 803.752 kb on + strand, within GFF815 at 803.752 kb on + strand, within GFF815 at 803.752 kb on + strand, within GFF815 at 803.752 kb on + strand, within GFF815 at 803.760 kb on - strand, within GFF815 at 803.760 kb on - strand, within GFF815 at 803.814 kb on - strand, within GFF815 at 803.832 kb on - strand, within GFF815 at 803.896 kb on + strand, within GFF815 at 803.897 kb on - strand, within GFF815 at 803.904 kb on - strand, within GFF815 at 803.904 kb on - strand, within GFF815 at 803.924 kb on + strand, within GFF815 at 803.958 kb on + strand, within GFF815 at 803.960 kb on + strand, within GFF815 at 803.972 kb on + strand, within GFF815 at 803.999 kb on + strand, within GFF815 at 804.022 kb on + strand, within GFF815 at 804.040 kb on - strand, within GFF815 at 804.047 kb on + strand, within GFF815 at 804.064 kb on - strand, within GFF815 at 804.069 kb on + strand, within GFF815 at 804.074 kb on + strand, within GFF815 at 804.088 kb on + strand, within GFF815 at 804.088 kb on + strand, within GFF815 at 804.088 kb on + strand, within GFF815 at 804.093 kb on + strand, within GFF815 at 804.096 kb on - strand, within GFF815 at 804.096 kb on - strand, within GFF815 at 804.096 kb on - strand, within GFF815 at 804.124 kb on + strand, within GFF815 at 804.126 kb on - strand, within GFF815 at 804.138 kb on - strand, within GFF815 at 804.145 kb on - strand, within GFF815 at 804.160 kb on + strand, within GFF815 at 804.178 kb on - strand, within GFF815 at 804.184 kb on + strand, within GFF815 at 804.187 kb on - strand, within GFF815 at 804.276 kb on - strand, within GFF815 at 804.285 kb on + strand, within GFF815 at 804.300 kb on - strand, within GFF815 at 804.316 kb on + strand, within GFF815 at 804.324 kb on - strand, within GFF815 at 804.324 kb on - strand, within GFF815 at 804.324 kb on - strand, within GFF815 at 804.339 kb on + strand, within GFF815 at 804.344 kb on + strand, within GFF815 at 804.344 kb on + strand, within GFF815 at 804.347 kb on - strand, within GFF815 at 804.347 kb on - strand, within GFF815 at 804.349 kb on + strand, within GFF815 at 804.349 kb on + strand, within GFF815 at 804.349 kb on + strand, within GFF815 at 804.352 kb on - strand, within GFF815 at 804.352 kb on - strand, within GFF815 at 804.357 kb on - strand, within GFF815 at 804.357 kb on - strand, within GFF815 at 804.357 kb on - strand, within GFF815 at 804.357 kb on - strand, within GFF815 at 804.373 kb on + strand, within GFF815 at 804.381 kb on - strand, within GFF815 at 804.381 kb on - strand, within GFF815 at 804.381 kb on - strand, within GFF815 at 804.382 kb on + strand, within GFF815 at 804.407 kb on - strand, within GFF815 at 804.407 kb on - strand, within GFF815 at 804.409 kb on + strand, within GFF815 at 804.417 kb on - strand, within GFF815 at 804.417 kb on - strand, within GFF815 at 804.422 kb on - strand, within GFF815 at 804.429 kb on + strand, within GFF815 at 804.429 kb on + strand, within GFF815 at 804.429 kb on + strand, within GFF815 at 804.432 kb on - strand, within GFF815 at 804.437 kb on - strand at 804.437 kb on - strand at 804.437 kb on - strand at 804.437 kb on - strand at 804.437 kb on - strand at 804.497 kb on - strand at 804.497 kb on - strand at 804.513 kb on + strand at 804.536 kb on - strand at 804.537 kb on + strand at 804.546 kb on + strand at 804.546 kb on + strand at 804.556 kb on + strand at 804.556 kb on + strand at 804.559 kb on - strand at 804.564 kb on - strand at 804.564 kb on - strand at 804.564 kb on - strand at 804.564 kb on - strand at 804.564 kb on - strand at 804.564 kb on - strand at 804.564 kb on - strand at 804.564 kb on - strand at 804.571 kb on + strand at 804.589 kb on + strand at 804.591 kb on - strand at 804.596 kb on + strand at 804.597 kb on - strand at 804.597 kb on - strand at 804.629 kb on - strand, within GFF816 at 804.653 kb on + strand, within GFF816 at 804.661 kb on - strand, within GFF816 at 804.697 kb on + strand, within GFF816 at 804.757 kb on + strand, within GFF816 at 804.774 kb on - strand, within GFF816 at 804.794 kb on + strand, within GFF816 at 804.832 kb on + strand, within GFF816 at 804.861 kb on + strand, within GFF816 at 804.861 kb on + strand, within GFF816 at 804.861 kb on + strand, within GFF816 at 804.861 kb on + strand, within GFF816 at 804.867 kb on + strand, within GFF816 at 804.868 kb on + strand, within GFF816 at 804.869 kb on - strand, within GFF816 at 804.869 kb on - strand, within GFF816 at 804.869 kb on - strand, within GFF816 at 804.876 kb on - strand, within GFF816 at 804.933 kb on - strand, within GFF816 at 804.938 kb on - strand, within GFF816 at 804.948 kb on - strand, within GFF816 at 804.960 kb on + strand, within GFF816 at 804.968 kb on - strand, within GFF816 at 804.988 kb on - strand, within GFF816 at 804.993 kb on - strand, within GFF816 at 804.998 kb on + strand, within GFF816 at 805.093 kb on - strand, within GFF816 at 805.144 kb on + strand, within GFF816 at 805.145 kb on + strand, within GFF816 at 805.148 kb on - strand, within GFF816 at 805.148 kb on - strand, within GFF816 at 805.148 kb on - strand, within GFF816 at 805.151 kb on + strand, within GFF816 at 805.283 kb on + strand, within GFF816 at 805.322 kb on + strand, within GFF816 at 805.322 kb on + strand, within GFF816 at 805.322 kb on + strand, within GFF816 at 805.322 kb on + strand, within GFF816 at 805.322 kb on + strand, within GFF816 at 805.330 kb on - strand, within GFF816 at 805.354 kb on + strand, within GFF816 at 805.371 kb on - strand, within GFF816 at 805.376 kb on + strand, within GFF816 at 805.384 kb on - strand, within GFF816 at 805.439 kb on + strand, within GFF816 at 805.444 kb on + strand, within GFF816 at 805.444 kb on + strand, within GFF816 at 805.474 kb on - strand, within GFF816 at 805.479 kb on + strand, within GFF816 at 805.479 kb on + strand, within GFF816 at 805.487 kb on - strand, within GFF816 at 805.488 kb on - strand, within GFF816 at 805.493 kb on - strand, within GFF816 at 805.519 kb on - strand, within GFF816 at 805.536 kb on - strand at 805.542 kb on - strand at 805.542 kb on - strand at 805.576 kb on + strand at 805.585 kb on - strand at 805.617 kb on + strand at 805.631 kb on - strand at 805.646 kb on + strand at 805.685 kb on - strand at 805.717 kb on - strand at 805.717 kb on - strand at 805.727 kb on - strand at 805.727 kb on - strand at 805.744 kb on + strand at 805.749 kb on + strand at 805.765 kb on - strand at 805.767 kb on + strand at 805.779 kb on + strand at 805.779 kb on + strand at 805.785 kb on + strand at 805.831 kb on + strand at 805.837 kb on - strand at 805.838 kb on + strand at 805.864 kb on + strand at 805.872 kb on - strand at 805.874 kb on + strand at 805.879 kb on + strand at 805.961 kb on - strand at 805.997 kb on - strand, within GFF817 at 805.997 kb on - strand, within GFF817 at 806.036 kb on + strand, within GFF817 at 806.083 kb on + strand, within GFF817 at 806.083 kb on - strand, within GFF817 at 806.098 kb on + strand, within GFF817 at 806.103 kb on + strand, within GFF817 at 806.108 kb on + strand, within GFF817 at 806.110 kb on + strand, within GFF817 at 806.111 kb on - strand, within GFF817 at 806.116 kb on - strand, within GFF817 at 806.116 kb on - strand, within GFF817 at 806.281 kb on + strand, within GFF817 at 806.290 kb on + strand, within GFF817 at 806.298 kb on - strand, within GFF817 at 806.338 kb on + strand, within GFF817 at 806.375 kb on - strand, within GFF817 at 806.406 kb on - strand, within GFF817 at 806.426 kb on + strand, within GFF817 at 806.457 kb on + strand, within GFF817 at 806.534 kb on + strand, within GFF817 at 806.534 kb on + strand, within GFF817 at 806.542 kb on - strand, within GFF817 at 806.576 kb on - strand, within GFF817 at 806.635 kb on - strand, within GFF817
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 803,516 + -0.9 803,516 + -0.5 803,518 - -1.3 803,521 + -1.6 803,524 - -0.2 803,534 - -0.0 803,549 - -1.1 803,562 + +0.2 803,570 - +0.5 803,570 - -0.2 803,571 + +0.8 803,579 - +2.4 803,587 - +0.9 803,590 + -0.6 803,726 - -0.7 803,733 - +0.4 803,733 - -0.8 803,752 + GFF815 0.11 -2.2 803,752 + GFF815 0.11 -0.8 803,752 + GFF815 0.11 +0.5 803,752 + GFF815 0.11 +1.1 803,752 + GFF815 0.11 -0.9 803,752 + GFF815 0.11 -0.9 803,760 - GFF815 0.12 -0.4 803,760 - GFF815 0.12 +0.3 803,814 - GFF815 0.18 +1.2 803,832 - GFF815 0.20 +0.4 803,896 + GFF815 0.27 +0.2 803,897 - GFF815 0.28 +0.1 803,904 - GFF815 0.28 -1.3 803,904 - GFF815 0.28 -0.8 803,924 + GFF815 0.31 -1.5 803,958 + GFF815 0.35 -0.7 803,960 + GFF815 0.35 +0.1 803,972 + GFF815 0.36 -1.2 803,999 + GFF815 0.39 +1.0 804,022 + GFF815 0.42 +1.0 804,040 - GFF815 0.44 -1.7 804,047 + GFF815 0.45 +0.6 804,064 - GFF815 0.47 +1.3 804,069 + GFF815 0.48 -1.3 804,074 + GFF815 0.48 -1.1 804,088 + GFF815 0.50 -0.6 804,088 + GFF815 0.50 -0.4 804,088 + GFF815 0.50 -0.7 804,093 + GFF815 0.50 -0.3 804,096 - GFF815 0.51 -1.0 804,096 - GFF815 0.51 +0.1 804,096 - GFF815 0.51 +0.3 804,124 + GFF815 0.54 +1.0 804,126 - GFF815 0.54 +0.4 804,138 - GFF815 0.56 +1.1 804,145 - GFF815 0.56 -1.5 804,160 + GFF815 0.58 -0.2 804,178 - GFF815 0.60 +0.6 804,184 + GFF815 0.61 -0.0 804,187 - GFF815 0.61 -2.2 804,276 - GFF815 0.72 -2.6 804,285 + GFF815 0.73 +0.7 804,300 - GFF815 0.74 -0.4 804,316 + GFF815 0.76 -0.2 804,324 - GFF815 0.77 +0.6 804,324 - GFF815 0.77 +2.0 804,324 - GFF815 0.77 -0.1 804,339 + GFF815 0.79 -0.1 804,344 + GFF815 0.79 -0.7 804,344 + GFF815 0.79 -0.0 804,347 - GFF815 0.80 +0.6 804,347 - GFF815 0.80 +1.0 804,349 + GFF815 0.80 +1.3 804,349 + GFF815 0.80 -0.3 804,349 + GFF815 0.80 -1.7 804,352 - GFF815 0.80 -0.8 804,352 - GFF815 0.80 -1.0 804,357 - GFF815 0.81 -0.2 804,357 - GFF815 0.81 -0.4 804,357 - GFF815 0.81 +1.1 804,357 - GFF815 0.81 +0.8 804,373 + GFF815 0.83 -1.0 804,381 - GFF815 0.84 -0.9 804,381 - GFF815 0.84 +0.3 804,381 - GFF815 0.84 -0.5 804,382 + GFF815 0.84 +0.8 804,407 - GFF815 0.87 +0.1 804,407 - GFF815 0.87 -1.6 804,409 + GFF815 0.87 +2.2 804,417 - GFF815 0.88 +0.4 804,417 - GFF815 0.88 -1.0 804,422 - GFF815 0.89 -0.5 804,429 + GFF815 0.89 +1.0 804,429 + GFF815 0.89 -0.1 804,429 + GFF815 0.89 -0.2 804,432 - GFF815 0.90 +0.2 804,437 - +0.3 804,437 - +0.1 804,437 - -1.3 804,437 - +0.3 804,437 - -0.0 804,497 - +0.2 804,497 - -1.0 804,513 + +0.2 804,536 - -1.5 804,537 + -1.0 804,546 + -0.4 804,546 + -0.4 804,556 + -2.0 804,556 + -1.6 804,559 - -2.2 804,564 - +0.3 804,564 - -2.0 804,564 - +1.1 804,564 - -3.1 804,564 - -0.6 804,564 - -1.9 804,564 - -1.4 804,564 - -1.6 804,571 + -0.6 804,589 + -1.5 804,591 - -1.1 804,596 + -2.7 804,597 - -1.0 804,597 - -1.8 804,629 - GFF816 0.10 -0.3 804,653 + GFF816 0.12 -1.3 804,661 - GFF816 0.13 +0.1 804,697 + GFF816 0.16 -1.2 804,757 + GFF816 0.21 -0.7 804,774 - GFF816 0.23 -0.7 804,794 + GFF816 0.25 -0.0 804,832 + GFF816 0.28 -0.2 804,861 + GFF816 0.31 -0.6 804,861 + GFF816 0.31 -0.8 804,861 + GFF816 0.31 -2.0 804,861 + GFF816 0.31 +0.6 804,867 + GFF816 0.31 -0.4 804,868 + GFF816 0.31 -1.2 804,869 - GFF816 0.31 -1.5 804,869 - GFF816 0.31 -2.0 804,869 - GFF816 0.31 -1.5 804,876 - GFF816 0.32 -0.9 804,933 - GFF816 0.37 -0.3 804,938 - GFF816 0.37 -1.6 804,948 - GFF816 0.38 -1.6 804,960 + GFF816 0.39 +0.6 804,968 - GFF816 0.40 -0.2 804,988 - GFF816 0.42 -1.3 804,993 - GFF816 0.42 -2.4 804,998 + GFF816 0.43 -2.7 805,093 - GFF816 0.51 -1.0 805,144 + GFF816 0.56 -1.9 805,145 + GFF816 0.56 -2.9 805,148 - GFF816 0.56 +0.8 805,148 - GFF816 0.56 -1.5 805,148 - GFF816 0.56 -1.9 805,151 + GFF816 0.56 -1.9 805,283 + GFF816 0.68 -0.7 805,322 + GFF816 0.71 -1.8 805,322 + GFF816 0.71 -0.9 805,322 + GFF816 0.71 -2.5 805,322 + GFF816 0.71 -1.7 805,322 + GFF816 0.71 -1.6 805,330 - GFF816 0.72 -2.1 805,354 + GFF816 0.74 -1.0 805,371 - GFF816 0.76 -2.5 805,376 + GFF816 0.76 -0.2 805,384 - GFF816 0.77 -1.6 805,439 + GFF816 0.82 -1.6 805,444 + GFF816 0.82 -0.7 805,444 + GFF816 0.82 -1.7 805,474 - GFF816 0.85 -1.4 805,479 + GFF816 0.85 -1.8 805,479 + GFF816 0.85 -0.0 805,487 - GFF816 0.86 -2.5 805,488 - GFF816 0.86 +0.8 805,493 - GFF816 0.87 -0.7 805,519 - GFF816 0.89 -1.0 805,536 - -0.8 805,542 - +0.6 805,542 - +0.8 805,576 + -1.7 805,585 - +0.3 805,617 + -1.4 805,631 - -2.8 805,646 + -1.0 805,685 - -0.2 805,717 - -1.8 805,717 - +0.1 805,727 - -1.0 805,727 - -0.9 805,744 + +0.4 805,749 + -0.2 805,765 - -0.7 805,767 + +1.3 805,779 + -0.1 805,779 + -1.6 805,785 + -1.1 805,831 + -1.9 805,837 - -1.9 805,838 + -0.0 805,864 + -0.5 805,872 - -0.9 805,874 + -0.0 805,879 + +1.4 805,961 - -0.3 805,997 - GFF817 0.11 +0.6 805,997 - GFF817 0.11 +0.1 806,036 + GFF817 0.14 -1.3 806,083 + GFF817 0.17 -0.4 806,083 - GFF817 0.17 +0.5 806,098 + GFF817 0.17 +1.4 806,103 + GFF817 0.18 +0.3 806,108 + GFF817 0.18 -1.0 806,110 + GFF817 0.18 -0.2 806,111 - GFF817 0.18 -0.7 806,116 - GFF817 0.19 +1.3 806,116 - GFF817 0.19 -1.1 806,281 + GFF817 0.29 -0.4 806,290 + GFF817 0.30 +0.8 806,298 - GFF817 0.30 -0.8 806,338 + GFF817 0.33 +0.2 806,375 - GFF817 0.35 -0.8 806,406 - GFF817 0.37 +1.1 806,426 + GFF817 0.38 -0.3 806,457 + GFF817 0.40 -0.5 806,534 + GFF817 0.45 +1.4 806,534 + GFF817 0.45 +0.1 806,542 - GFF817 0.46 +0.6 806,576 - GFF817 0.48 +0.3 806,635 - GFF817 0.51 +1.1
Or see this region's nucleotide sequence