Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF680 and GFF681 are separated by 398 nucleotides GFF681 and GFF682 are separated by 13 nucleotides GFF682 and GFF683 are separated by 101 nucleotides
GFF680 - Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1), at 671,742 to 673,640
GFF680
GFF681 - Uncharacterized glutathione S-transferase-like protein, at 674,039 to 674,233
GFF681
GFF682 - Uncharacterized glutathione S-transferase-like protein, at 674,247 to 674,903
GFF682
GFF683 - Fumarate hydratase class I, aerobic (EC 4.2.1.2), at 675,005 to 676,525
GFF683
Position (kb) 674
675 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 673.757 kb on - strand at 673.757 kb on - strand at 673.782 kb on - strand at 673.782 kb on - strand at 673.825 kb on + strand at 673.859 kb on - strand at 673.871 kb on - strand at 673.949 kb on - strand at 673.969 kb on + strand at 673.986 kb on - strand at 673.988 kb on + strand at 673.989 kb on - strand at 673.989 kb on - strand at 673.991 kb on - strand at 673.991 kb on - strand at 673.991 kb on - strand at 673.996 kb on - strand at 674.005 kb on + strand at 674.007 kb on + strand at 674.013 kb on - strand at 674.024 kb on + strand at 674.109 kb on + strand, within GFF681 at 674.109 kb on + strand, within GFF681 at 674.117 kb on - strand, within GFF681 at 674.117 kb on - strand, within GFF681 at 674.117 kb on - strand, within GFF681 at 674.141 kb on - strand, within GFF681 at 674.141 kb on - strand, within GFF681 at 674.154 kb on + strand, within GFF681 at 674.169 kb on - strand, within GFF681 at 674.171 kb on + strand, within GFF681 at 674.171 kb on + strand, within GFF681 at 674.179 kb on - strand, within GFF681 at 674.179 kb on - strand, within GFF681 at 674.198 kb on - strand, within GFF681 at 674.203 kb on - strand, within GFF681 at 674.222 kb on - strand at 674.224 kb on + strand at 674.224 kb on + strand at 674.224 kb on + strand at 674.224 kb on + strand at 674.224 kb on + strand at 674.224 kb on + strand at 674.232 kb on - strand at 674.244 kb on + strand at 674.244 kb on + strand at 674.252 kb on - strand at 674.252 kb on - strand at 674.262 kb on - strand at 674.263 kb on - strand at 674.265 kb on + strand at 674.265 kb on + strand at 674.268 kb on - strand at 674.280 kb on - strand at 674.289 kb on + strand at 674.289 kb on + strand at 674.289 kb on + strand at 674.289 kb on - strand at 674.313 kb on + strand, within GFF682 at 674.318 kb on + strand, within GFF682 at 674.320 kb on + strand, within GFF682 at 674.328 kb on - strand, within GFF682 at 674.347 kb on + strand, within GFF682 at 674.410 kb on - strand, within GFF682 at 674.410 kb on - strand, within GFF682 at 674.428 kb on + strand, within GFF682 at 674.462 kb on - strand, within GFF682 at 674.465 kb on + strand, within GFF682 at 674.465 kb on + strand, within GFF682 at 674.467 kb on - strand, within GFF682 at 674.471 kb on + strand, within GFF682 at 674.479 kb on + strand, within GFF682 at 674.479 kb on + strand, within GFF682 at 674.487 kb on - strand, within GFF682 at 674.497 kb on - strand, within GFF682 at 674.538 kb on - strand, within GFF682 at 674.602 kb on - strand, within GFF682 at 674.608 kb on - strand, within GFF682 at 674.640 kb on + strand, within GFF682 at 674.653 kb on - strand, within GFF682 at 674.653 kb on - strand, within GFF682 at 674.653 kb on - strand, within GFF682 at 674.659 kb on - strand, within GFF682 at 674.659 kb on - strand, within GFF682 at 674.659 kb on - strand, within GFF682 at 674.661 kb on + strand, within GFF682 at 674.661 kb on + strand, within GFF682 at 674.682 kb on + strand, within GFF682 at 674.682 kb on + strand, within GFF682 at 674.682 kb on + strand, within GFF682 at 674.682 kb on + strand, within GFF682 at 674.682 kb on + strand, within GFF682 at 674.687 kb on + strand, within GFF682 at 674.687 kb on + strand, within GFF682 at 674.689 kb on + strand, within GFF682 at 674.690 kb on - strand, within GFF682 at 674.690 kb on - strand, within GFF682 at 674.695 kb on - strand, within GFF682 at 674.695 kb on - strand, within GFF682 at 674.695 kb on - strand, within GFF682 at 674.706 kb on + strand, within GFF682 at 674.706 kb on + strand, within GFF682 at 674.740 kb on + strand, within GFF682 at 674.749 kb on - strand, within GFF682 at 674.758 kb on + strand, within GFF682 at 674.799 kb on + strand, within GFF682 at 674.799 kb on + strand, within GFF682 at 674.807 kb on - strand, within GFF682 at 674.807 kb on - strand, within GFF682 at 674.809 kb on + strand, within GFF682 at 674.817 kb on - strand, within GFF682 at 674.817 kb on - strand, within GFF682 at 674.822 kb on + strand, within GFF682 at 674.822 kb on + strand, within GFF682 at 674.822 kb on + strand, within GFF682 at 674.822 kb on + strand, within GFF682 at 674.822 kb on + strand, within GFF682 at 674.830 kb on - strand, within GFF682 at 674.830 kb on - strand, within GFF682 at 674.830 kb on - strand, within GFF682 at 674.830 kb on - strand, within GFF682 at 674.830 kb on - strand, within GFF682 at 674.830 kb on - strand, within GFF682 at 674.830 kb on - strand, within GFF682 at 674.833 kb on + strand, within GFF682 at 674.850 kb on + strand at 674.850 kb on + strand at 674.850 kb on + strand at 674.858 kb on - strand at 674.858 kb on - strand at 674.858 kb on - strand at 674.863 kb on - strand at 674.905 kb on + strand at 674.905 kb on + strand at 674.905 kb on + strand at 674.905 kb on - strand at 674.905 kb on - strand at 674.913 kb on - strand at 674.915 kb on + strand at 674.915 kb on + strand at 674.915 kb on + strand at 674.915 kb on + strand at 674.915 kb on + strand at 674.915 kb on + strand at 674.915 kb on + strand at 674.915 kb on + strand at 674.915 kb on + strand at 674.915 kb on + strand at 674.915 kb on + strand at 674.915 kb on + strand at 674.915 kb on + strand at 674.915 kb on + strand at 674.915 kb on + strand at 674.915 kb on + strand at 674.915 kb on + strand at 674.915 kb on + strand at 674.915 kb on + strand at 674.915 kb on + strand at 674.915 kb on + strand at 674.915 kb on + strand at 674.923 kb on - strand at 674.923 kb on - strand at 674.923 kb on - strand at 674.923 kb on - strand at 674.923 kb on - strand at 674.923 kb on - strand at 674.923 kb on - strand at 674.923 kb on - strand at 674.923 kb on - strand at 674.923 kb on - strand at 674.923 kb on - strand at 674.923 kb on - strand at 674.923 kb on - strand at 674.923 kb on - strand at 674.923 kb on - strand at 674.923 kb on - strand at 674.923 kb on - strand at 674.928 kb on - strand at 674.937 kb on + strand at 674.937 kb on + strand at 674.939 kb on + strand at 674.940 kb on + strand at 674.940 kb on + strand at 674.940 kb on + strand at 674.945 kb on - strand at 674.945 kb on - strand at 674.960 kb on + strand at 674.960 kb on + strand at 674.963 kb on - strand at 674.965 kb on + strand at 674.965 kb on + strand at 674.968 kb on + strand at 674.968 kb on + strand at 674.973 kb on - strand at 674.976 kb on - strand at 674.976 kb on - strand at 674.978 kb on - strand at 674.999 kb on + strand at 674.999 kb on + strand at 674.999 kb on + strand at 674.999 kb on + strand at 675.007 kb on - strand at 675.007 kb on - strand at 675.007 kb on - strand at 675.007 kb on - strand at 675.007 kb on - strand at 675.007 kb on - strand at 675.007 kb on - strand at 675.007 kb on - strand at 675.013 kb on + strand at 675.021 kb on - strand at 675.028 kb on + strand at 675.029 kb on - strand at 675.029 kb on - strand at 675.031 kb on + strand at 675.039 kb on - strand at 675.061 kb on - strand at 675.083 kb on + strand at 675.091 kb on - strand at 675.100 kb on + strand at 675.100 kb on + strand at 675.100 kb on + strand at 675.100 kb on + strand at 675.100 kb on + strand at 675.100 kb on + strand at 675.100 kb on + strand at 675.100 kb on + strand at 675.100 kb on + strand at 675.100 kb on + strand at 675.100 kb on + strand at 675.100 kb on + strand at 675.100 kb on + strand at 675.106 kb on + strand at 675.106 kb on + strand at 675.108 kb on - strand at 675.108 kb on - strand at 675.108 kb on - strand at 675.108 kb on - strand at 675.108 kb on - strand at 675.108 kb on - strand at 675.108 kb on - strand at 675.108 kb on - strand at 675.108 kb on - strand at 675.108 kb on - strand at 675.108 kb on - strand at 675.109 kb on + strand at 675.113 kb on - strand at 675.114 kb on - strand at 675.116 kb on + strand at 675.121 kb on + strand at 675.144 kb on + strand at 675.144 kb on + strand at 675.150 kb on + strand at 675.152 kb on - strand at 675.157 kb on - strand, within GFF683 at 675.158 kb on - strand, within GFF683 at 675.172 kb on + strand, within GFF683 at 675.190 kb on - strand, within GFF683 at 675.224 kb on - strand, within GFF683 at 675.226 kb on - strand, within GFF683
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 673,757 - +0.5 673,757 - -0.7 673,782 - -0.4 673,782 - +1.7 673,825 + -0.4 673,859 - -0.6 673,871 - -0.3 673,949 - +0.2 673,969 + -1.5 673,986 - +0.7 673,988 + -1.2 673,989 - -1.4 673,989 - -1.5 673,991 - -0.3 673,991 - -1.1 673,991 - -1.3 673,996 - -1.5 674,005 + +0.5 674,007 + -0.2 674,013 - +0.2 674,024 + +0.3 674,109 + GFF681 0.36 -1.3 674,109 + GFF681 0.36 +0.3 674,117 - GFF681 0.40 -2.1 674,117 - GFF681 0.40 +0.8 674,117 - GFF681 0.40 -2.0 674,141 - GFF681 0.52 -0.8 674,141 - GFF681 0.52 -1.7 674,154 + GFF681 0.59 -0.5 674,169 - GFF681 0.67 -1.1 674,171 + GFF681 0.68 -0.7 674,171 + GFF681 0.68 -0.9 674,179 - GFF681 0.72 -1.1 674,179 - GFF681 0.72 -1.5 674,198 - GFF681 0.82 -0.6 674,203 - GFF681 0.84 -0.0 674,222 - -1.4 674,224 + -1.0 674,224 + -1.3 674,224 + +1.0 674,224 + -1.1 674,224 + -0.8 674,224 + -0.5 674,232 - +0.1 674,244 + +1.3 674,244 + -1.1 674,252 - -2.6 674,252 - +0.2 674,262 - -1.0 674,263 - +1.3 674,265 + -0.2 674,265 + -1.7 674,268 - -1.2 674,280 - -0.4 674,289 + +0.5 674,289 + +0.4 674,289 + -0.5 674,289 - +1.4 674,313 + GFF682 0.10 -0.8 674,318 + GFF682 0.11 -2.1 674,320 + GFF682 0.11 -0.4 674,328 - GFF682 0.12 +0.1 674,347 + GFF682 0.15 +1.7 674,410 - GFF682 0.25 -1.2 674,410 - GFF682 0.25 +1.0 674,428 + GFF682 0.28 -1.3 674,462 - GFF682 0.33 -1.7 674,465 + GFF682 0.33 +0.3 674,465 + GFF682 0.33 -0.8 674,467 - GFF682 0.33 -0.4 674,471 + GFF682 0.34 +1.3 674,479 + GFF682 0.35 -2.1 674,479 + GFF682 0.35 +0.7 674,487 - GFF682 0.37 -1.0 674,497 - GFF682 0.38 -0.5 674,538 - GFF682 0.44 -0.6 674,602 - GFF682 0.54 -1.7 674,608 - GFF682 0.55 -0.5 674,640 + GFF682 0.60 -1.3 674,653 - GFF682 0.62 -0.3 674,653 - GFF682 0.62 -0.3 674,653 - GFF682 0.62 +0.2 674,659 - GFF682 0.63 -0.4 674,659 - GFF682 0.63 -1.3 674,659 - GFF682 0.63 -1.6 674,661 + GFF682 0.63 +0.6 674,661 + GFF682 0.63 -0.9 674,682 + GFF682 0.66 -1.6 674,682 + GFF682 0.66 -0.4 674,682 + GFF682 0.66 -0.2 674,682 + GFF682 0.66 +0.0 674,682 + GFF682 0.66 +0.3 674,687 + GFF682 0.67 +0.4 674,687 + GFF682 0.67 +0.4 674,689 + GFF682 0.67 +0.6 674,690 - GFF682 0.67 -1.1 674,690 - GFF682 0.67 -0.8 674,695 - GFF682 0.68 +0.7 674,695 - GFF682 0.68 +0.7 674,695 - GFF682 0.68 -1.2 674,706 + GFF682 0.70 +0.6 674,706 + GFF682 0.70 -1.4 674,740 + GFF682 0.75 -1.7 674,749 - GFF682 0.76 -0.2 674,758 + GFF682 0.78 -0.9 674,799 + GFF682 0.84 -1.6 674,799 + GFF682 0.84 -0.4 674,807 - GFF682 0.85 -0.2 674,807 - GFF682 0.85 -0.3 674,809 + GFF682 0.86 -0.6 674,817 - GFF682 0.87 -0.6 674,817 - GFF682 0.87 -1.6 674,822 + GFF682 0.88 -0.4 674,822 + GFF682 0.88 +0.5 674,822 + GFF682 0.88 +0.4 674,822 + GFF682 0.88 -1.4 674,822 + GFF682 0.88 +0.7 674,830 - GFF682 0.89 -3.3 674,830 - GFF682 0.89 -0.2 674,830 - GFF682 0.89 -2.6 674,830 - GFF682 0.89 -0.6 674,830 - GFF682 0.89 +0.3 674,830 - GFF682 0.89 -0.2 674,830 - GFF682 0.89 -0.4 674,833 + GFF682 0.89 -1.1 674,850 + +0.5 674,850 + -0.9 674,850 + +0.3 674,858 - -1.0 674,858 - +0.4 674,858 - +0.2 674,863 - +0.5 674,905 + -2.0 674,905 + +1.1 674,905 + -0.5 674,905 - -1.2 674,905 - -0.1 674,913 - -1.2 674,915 + -1.4 674,915 + -0.0 674,915 + +0.1 674,915 + +0.0 674,915 + -0.5 674,915 + -1.3 674,915 + +1.8 674,915 + -0.7 674,915 + -0.4 674,915 + +0.3 674,915 + +0.9 674,915 + -2.0 674,915 + -0.4 674,915 + -0.3 674,915 + +1.2 674,915 + -0.4 674,915 + -0.2 674,915 + +0.0 674,915 + +0.8 674,915 + -1.8 674,915 + +0.7 674,915 + -0.2 674,923 - -0.3 674,923 - -2.1 674,923 - -0.5 674,923 - +1.2 674,923 - -1.6 674,923 - -1.5 674,923 - -1.0 674,923 - +0.7 674,923 - +0.7 674,923 - -1.8 674,923 - -0.3 674,923 - -0.3 674,923 - -0.7 674,923 - -1.2 674,923 - -1.2 674,923 - -0.3 674,923 - +1.5 674,928 - -0.6 674,937 + -1.4 674,937 + -0.3 674,939 + -0.6 674,940 + -0.4 674,940 + -0.8 674,940 + +1.5 674,945 - -0.4 674,945 - -0.0 674,960 + -1.2 674,960 + -0.8 674,963 - +1.0 674,965 + -0.8 674,965 + -1.2 674,968 + -0.5 674,968 + -0.8 674,973 - -0.3 674,976 - -0.4 674,976 - +0.5 674,978 - -0.3 674,999 + -0.4 674,999 + -0.6 674,999 + +1.2 674,999 + -0.5 675,007 - +0.7 675,007 - -1.4 675,007 - -0.8 675,007 - -0.8 675,007 - -0.7 675,007 - -0.4 675,007 - -1.2 675,007 - -0.3 675,013 + -0.3 675,021 - -0.8 675,028 + +0.3 675,029 - -1.9 675,029 - +0.9 675,031 + +0.3 675,039 - -0.6 675,061 - -0.8 675,083 + -0.5 675,091 - -2.5 675,100 + -0.4 675,100 + -0.6 675,100 + -0.7 675,100 + +0.6 675,100 + -0.2 675,100 + +0.1 675,100 + +0.2 675,100 + -0.7 675,100 + -2.2 675,100 + -2.9 675,100 + +0.4 675,100 + -0.3 675,100 + -1.1 675,106 + -0.2 675,106 + -1.2 675,108 - -1.5 675,108 - +0.8 675,108 - -0.7 675,108 - -0.8 675,108 - -0.8 675,108 - -0.9 675,108 - -1.7 675,108 - -0.2 675,108 - -0.5 675,108 - +0.1 675,108 - -0.8 675,109 + +0.5 675,113 - -0.3 675,114 - +0.6 675,116 + +1.2 675,121 + -0.3 675,144 + -0.4 675,144 + +0.4 675,150 + -1.0 675,152 - -0.4 675,157 - GFF683 0.10 -1.0 675,158 - GFF683 0.10 -0.4 675,172 + GFF683 0.11 -1.1 675,190 - GFF683 0.12 -0.1 675,224 - GFF683 0.14 +0.2 675,226 - GFF683 0.15 -0.9
Or see this region's nucleotide sequence