Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF656 and GFF657 are separated by 131 nucleotides GFF657 and GFF658 are separated by 49 nucleotides
GFF656 - Lysyl-tRNA synthetase (class I) (EC 6.1.1.6), at 653,995 to 655,575
GFF656
GFF657 - hypothetical protein, at 655,707 to 656,078
GFF657
GFF658 - DinG family ATP-dependent helicase YoaA, at 656,128 to 658,881
GFF658
Position (kb) 655
656
657 Strain fitness (log2 ratio) -2
-1
0
1
2 at 655.585 kb on + strand at 655.664 kb on + strand at 655.670 kb on + strand at 655.672 kb on - strand at 655.678 kb on - strand at 655.684 kb on + strand at 655.690 kb on + strand at 655.692 kb on - strand at 655.692 kb on - strand at 655.698 kb on - strand at 655.701 kb on + strand at 655.704 kb on + strand at 655.712 kb on + strand at 655.712 kb on - strand at 655.716 kb on + strand at 655.724 kb on - strand at 655.767 kb on + strand, within GFF657 at 655.767 kb on + strand, within GFF657 at 655.775 kb on - strand, within GFF657 at 655.775 kb on - strand, within GFF657 at 655.775 kb on - strand, within GFF657 at 655.775 kb on - strand, within GFF657 at 655.775 kb on - strand, within GFF657 at 655.777 kb on + strand, within GFF657 at 655.777 kb on + strand, within GFF657 at 655.777 kb on + strand, within GFF657 at 655.785 kb on - strand, within GFF657 at 655.785 kb on - strand, within GFF657 at 655.821 kb on + strand, within GFF657 at 655.821 kb on + strand, within GFF657 at 655.821 kb on + strand, within GFF657 at 655.843 kb on + strand, within GFF657 at 655.859 kb on + strand, within GFF657 at 655.873 kb on + strand, within GFF657 at 655.873 kb on + strand, within GFF657 at 655.873 kb on + strand, within GFF657 at 655.873 kb on + strand, within GFF657 at 655.880 kb on - strand, within GFF657 at 655.881 kb on - strand, within GFF657 at 655.883 kb on + strand, within GFF657 at 655.891 kb on - strand, within GFF657 at 655.891 kb on - strand, within GFF657 at 655.891 kb on - strand, within GFF657 at 655.900 kb on + strand, within GFF657 at 655.900 kb on + strand, within GFF657 at 655.900 kb on + strand, within GFF657 at 655.900 kb on + strand, within GFF657 at 655.900 kb on + strand, within GFF657 at 655.900 kb on + strand, within GFF657 at 655.900 kb on + strand, within GFF657 at 655.900 kb on + strand, within GFF657 at 655.908 kb on - strand, within GFF657 at 655.908 kb on - strand, within GFF657 at 655.908 kb on - strand, within GFF657 at 655.910 kb on + strand, within GFF657 at 655.910 kb on + strand, within GFF657 at 655.913 kb on - strand, within GFF657 at 655.933 kb on + strand, within GFF657 at 655.933 kb on + strand, within GFF657 at 655.941 kb on - strand, within GFF657 at 655.941 kb on - strand, within GFF657 at 655.941 kb on - strand, within GFF657 at 655.941 kb on - strand, within GFF657 at 655.941 kb on - strand, within GFF657 at 655.946 kb on - strand, within GFF657 at 655.967 kb on + strand, within GFF657 at 655.967 kb on + strand, within GFF657 at 655.975 kb on - strand, within GFF657 at 655.975 kb on - strand, within GFF657 at 656.039 kb on - strand, within GFF657 at 656.041 kb on + strand at 656.041 kb on + strand at 656.044 kb on - strand at 656.049 kb on - strand at 656.107 kb on + strand at 656.112 kb on + strand at 656.120 kb on - strand at 656.120 kb on - strand at 656.120 kb on - strand at 656.120 kb on - strand at 656.120 kb on - strand at 656.120 kb on - strand at 656.130 kb on + strand at 656.143 kb on + strand at 656.143 kb on + strand at 656.151 kb on - strand at 656.151 kb on - strand at 656.161 kb on - strand at 656.167 kb on - strand at 656.174 kb on + strand at 656.174 kb on + strand at 656.192 kb on - strand at 656.195 kb on + strand at 656.207 kb on - strand at 656.218 kb on + strand at 656.218 kb on + strand at 656.225 kb on + strand at 656.226 kb on - strand at 656.226 kb on - strand at 656.226 kb on - strand at 656.226 kb on - strand at 656.226 kb on - strand at 656.226 kb on - strand at 656.259 kb on + strand at 656.259 kb on + strand at 656.262 kb on - strand at 656.264 kb on + strand at 656.267 kb on - strand at 656.272 kb on - strand at 656.272 kb on - strand at 656.279 kb on + strand at 656.281 kb on - strand at 656.294 kb on + strand at 656.294 kb on + strand at 656.302 kb on - strand at 656.302 kb on - strand at 656.309 kb on + strand at 656.317 kb on - strand at 656.317 kb on - strand at 656.317 kb on - strand at 656.317 kb on - strand at 656.317 kb on - strand at 656.317 kb on - strand at 656.325 kb on + strand at 656.326 kb on + strand at 656.327 kb on - strand at 656.333 kb on - strand at 656.334 kb on - strand at 656.336 kb on - strand at 656.361 kb on + strand at 656.369 kb on - strand at 656.386 kb on + strand at 656.387 kb on + strand at 656.394 kb on - strand at 656.394 kb on - strand at 656.395 kb on - strand at 656.428 kb on + strand, within GFF658 at 656.431 kb on - strand, within GFF658 at 656.455 kb on + strand, within GFF658 at 656.455 kb on + strand, within GFF658 at 656.463 kb on - strand, within GFF658 at 656.469 kb on + strand, within GFF658 at 656.518 kb on + strand, within GFF658 at 656.518 kb on + strand, within GFF658 at 656.526 kb on - strand, within GFF658 at 656.538 kb on + strand, within GFF658 at 656.540 kb on - strand, within GFF658 at 656.540 kb on - strand, within GFF658 at 656.540 kb on - strand, within GFF658 at 656.540 kb on - strand, within GFF658 at 656.543 kb on + strand, within GFF658 at 656.600 kb on + strand, within GFF658 at 656.608 kb on - strand, within GFF658 at 656.610 kb on + strand, within GFF658 at 656.619 kb on + strand, within GFF658 at 656.636 kb on + strand, within GFF658 at 656.636 kb on + strand, within GFF658 at 656.636 kb on + strand, within GFF658 at 656.636 kb on + strand, within GFF658 at 656.636 kb on + strand, within GFF658 at 656.636 kb on + strand, within GFF658 at 656.636 kb on + strand, within GFF658 at 656.636 kb on + strand, within GFF658 at 656.636 kb on + strand, within GFF658 at 656.644 kb on - strand, within GFF658 at 656.644 kb on - strand, within GFF658 at 656.644 kb on - strand, within GFF658 at 656.644 kb on - strand, within GFF658 at 656.644 kb on - strand, within GFF658 at 656.644 kb on - strand, within GFF658 at 656.644 kb on - strand, within GFF658 at 656.644 kb on - strand, within GFF658 at 656.649 kb on - strand, within GFF658 at 656.649 kb on - strand, within GFF658 at 656.651 kb on + strand, within GFF658 at 656.664 kb on + strand, within GFF658 at 656.664 kb on + strand, within GFF658 at 656.672 kb on - strand, within GFF658 at 656.672 kb on - strand, within GFF658 at 656.693 kb on - strand, within GFF658 at 656.697 kb on + strand, within GFF658 at 656.700 kb on - strand, within GFF658 at 656.700 kb on - strand, within GFF658 at 656.705 kb on - strand, within GFF658 at 656.705 kb on - strand, within GFF658 at 656.728 kb on - strand, within GFF658 at 656.735 kb on + strand, within GFF658 at 656.752 kb on - strand, within GFF658 at 656.767 kb on - strand, within GFF658 at 656.767 kb on - strand, within GFF658 at 656.787 kb on + strand, within GFF658 at 656.787 kb on + strand, within GFF658 at 656.787 kb on + strand, within GFF658 at 656.795 kb on - strand, within GFF658 at 656.795 kb on - strand, within GFF658 at 656.835 kb on + strand, within GFF658 at 656.835 kb on + strand, within GFF658 at 656.838 kb on - strand, within GFF658 at 656.840 kb on + strand, within GFF658 at 656.840 kb on + strand, within GFF658 at 656.843 kb on - strand, within GFF658 at 656.848 kb on - strand, within GFF658 at 656.848 kb on - strand, within GFF658 at 656.851 kb on + strand, within GFF658 at 656.851 kb on + strand, within GFF658 at 656.854 kb on - strand, within GFF658 at 656.856 kb on + strand, within GFF658 at 656.856 kb on + strand, within GFF658 at 656.856 kb on + strand, within GFF658 at 656.856 kb on + strand, within GFF658 at 656.856 kb on + strand, within GFF658 at 656.856 kb on + strand, within GFF658 at 656.856 kb on + strand, within GFF658 at 656.856 kb on + strand, within GFF658 at 656.856 kb on + strand, within GFF658 at 656.859 kb on - strand, within GFF658 at 656.864 kb on - strand, within GFF658 at 656.864 kb on - strand, within GFF658 at 656.864 kb on - strand, within GFF658 at 656.864 kb on - strand, within GFF658 at 656.864 kb on - strand, within GFF658 at 656.864 kb on - strand, within GFF658 at 656.864 kb on - strand, within GFF658 at 656.864 kb on - strand, within GFF658 at 656.864 kb on - strand, within GFF658 at 656.864 kb on - strand, within GFF658 at 656.864 kb on - strand, within GFF658 at 656.871 kb on + strand, within GFF658 at 656.877 kb on + strand, within GFF658 at 656.879 kb on - strand, within GFF658 at 656.879 kb on - strand, within GFF658 at 656.879 kb on - strand, within GFF658 at 656.884 kb on + strand, within GFF658 at 656.890 kb on - strand, within GFF658 at 656.892 kb on - strand, within GFF658 at 656.908 kb on - strand, within GFF658 at 656.946 kb on + strand, within GFF658 at 656.951 kb on - strand, within GFF658 at 656.956 kb on - strand, within GFF658 at 656.983 kb on - strand, within GFF658 at 656.983 kb on - strand, within GFF658 at 656.988 kb on - strand, within GFF658 at 657.052 kb on - strand, within GFF658
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 655,585 + -2.0 655,664 + +0.5 655,670 + -1.4 655,672 - -0.3 655,678 - +0.8 655,684 + -0.8 655,690 + -0.7 655,692 - -0.2 655,692 - +0.5 655,698 - -0.2 655,701 + +0.6 655,704 + -0.5 655,712 + -0.3 655,712 - -0.5 655,716 + +1.3 655,724 - +1.7 655,767 + GFF657 0.16 +0.1 655,767 + GFF657 0.16 -1.9 655,775 - GFF657 0.18 +0.2 655,775 - GFF657 0.18 -1.8 655,775 - GFF657 0.18 +0.8 655,775 - GFF657 0.18 +0.1 655,775 - GFF657 0.18 -2.1 655,777 + GFF657 0.19 +1.3 655,777 + GFF657 0.19 +0.8 655,777 + GFF657 0.19 -0.4 655,785 - GFF657 0.21 +0.6 655,785 - GFF657 0.21 -0.5 655,821 + GFF657 0.31 -0.4 655,821 + GFF657 0.31 -1.2 655,821 + GFF657 0.31 -0.5 655,843 + GFF657 0.37 -0.5 655,859 + GFF657 0.41 -0.6 655,873 + GFF657 0.45 -0.5 655,873 + GFF657 0.45 +0.6 655,873 + GFF657 0.45 -1.6 655,873 + GFF657 0.45 +0.0 655,880 - GFF657 0.47 -1.1 655,881 - GFF657 0.47 -0.4 655,883 + GFF657 0.47 -0.8 655,891 - GFF657 0.49 -1.5 655,891 - GFF657 0.49 +0.5 655,891 - GFF657 0.49 -0.8 655,900 + GFF657 0.52 -1.2 655,900 + GFF657 0.52 -0.5 655,900 + GFF657 0.52 -0.9 655,900 + GFF657 0.52 +0.2 655,900 + GFF657 0.52 +0.8 655,900 + GFF657 0.52 -0.5 655,900 + GFF657 0.52 +1.2 655,900 + GFF657 0.52 -1.4 655,908 - GFF657 0.54 +0.5 655,908 - GFF657 0.54 -0.1 655,908 - GFF657 0.54 +1.2 655,910 + GFF657 0.55 -1.1 655,910 + GFF657 0.55 -0.0 655,913 - GFF657 0.55 +0.5 655,933 + GFF657 0.61 -1.3 655,933 + GFF657 0.61 -0.8 655,941 - GFF657 0.63 -2.1 655,941 - GFF657 0.63 -1.5 655,941 - GFF657 0.63 -2.4 655,941 - GFF657 0.63 +0.0 655,941 - GFF657 0.63 -1.2 655,946 - GFF657 0.64 -0.8 655,967 + GFF657 0.70 +0.3 655,967 + GFF657 0.70 +0.4 655,975 - GFF657 0.72 +0.3 655,975 - GFF657 0.72 -0.2 656,039 - GFF657 0.89 -0.8 656,041 + +0.1 656,041 + -0.9 656,044 - -1.2 656,049 - -0.9 656,107 + -0.6 656,112 + +0.2 656,120 - -1.8 656,120 - +0.2 656,120 - +0.1 656,120 - +0.2 656,120 - -0.8 656,120 - -1.0 656,130 + -0.2 656,143 + -1.3 656,143 + +0.1 656,151 - +0.8 656,151 - -1.4 656,161 - -0.8 656,167 - -0.5 656,174 + +0.6 656,174 + -2.5 656,192 - +0.6 656,195 + -0.6 656,207 - -0.0 656,218 + -1.4 656,218 + +0.1 656,225 + -0.3 656,226 - +0.3 656,226 - +0.2 656,226 - -0.5 656,226 - -0.9 656,226 - -1.2 656,226 - +1.3 656,259 + -0.7 656,259 + -0.3 656,262 - -0.9 656,264 + +1.0 656,267 - -0.0 656,272 - +0.9 656,272 - +0.8 656,279 + -0.7 656,281 - -1.2 656,294 + -0.5 656,294 + +0.5 656,302 - -1.3 656,302 - -1.1 656,309 + +1.7 656,317 - -0.8 656,317 - -1.0 656,317 - -1.7 656,317 - +0.9 656,317 - -1.0 656,317 - -1.0 656,325 + +0.3 656,326 + +0.9 656,327 - -0.2 656,333 - -0.2 656,334 - -1.2 656,336 - -1.1 656,361 + -0.7 656,369 - -1.8 656,386 + -0.2 656,387 + +0.2 656,394 - -0.8 656,394 - -0.6 656,395 - -1.7 656,428 + GFF658 0.11 -0.2 656,431 - GFF658 0.11 +0.7 656,455 + GFF658 0.12 +0.5 656,455 + GFF658 0.12 -1.4 656,463 - GFF658 0.12 +0.5 656,469 + GFF658 0.12 +0.1 656,518 + GFF658 0.14 +0.8 656,518 + GFF658 0.14 -1.5 656,526 - GFF658 0.14 -0.8 656,538 + GFF658 0.15 -1.2 656,540 - GFF658 0.15 -1.3 656,540 - GFF658 0.15 -0.4 656,540 - GFF658 0.15 +0.8 656,540 - GFF658 0.15 +1.1 656,543 + GFF658 0.15 -0.9 656,600 + GFF658 0.17 +0.3 656,608 - GFF658 0.17 -1.7 656,610 + GFF658 0.18 +0.4 656,619 + GFF658 0.18 -2.5 656,636 + GFF658 0.18 -0.8 656,636 + GFF658 0.18 +0.8 656,636 + GFF658 0.18 -0.8 656,636 + GFF658 0.18 -0.8 656,636 + GFF658 0.18 -0.8 656,636 + GFF658 0.18 +0.6 656,636 + GFF658 0.18 +1.2 656,636 + GFF658 0.18 +1.0 656,636 + GFF658 0.18 -0.9 656,644 - GFF658 0.19 -0.5 656,644 - GFF658 0.19 -1.1 656,644 - GFF658 0.19 +2.2 656,644 - GFF658 0.19 -1.4 656,644 - GFF658 0.19 -1.2 656,644 - GFF658 0.19 -1.4 656,644 - GFF658 0.19 -2.6 656,644 - GFF658 0.19 -0.5 656,649 - GFF658 0.19 +0.7 656,649 - GFF658 0.19 -1.7 656,651 + GFF658 0.19 +0.1 656,664 + GFF658 0.19 -0.8 656,664 + GFF658 0.19 -0.1 656,672 - GFF658 0.20 +1.2 656,672 - GFF658 0.20 -0.8 656,693 - GFF658 0.21 +1.0 656,697 + GFF658 0.21 -0.8 656,700 - GFF658 0.21 +1.4 656,700 - GFF658 0.21 +1.6 656,705 - GFF658 0.21 -1.8 656,705 - GFF658 0.21 -0.5 656,728 - GFF658 0.22 -0.3 656,735 + GFF658 0.22 -1.6 656,752 - GFF658 0.23 +0.0 656,767 - GFF658 0.23 -0.3 656,767 - GFF658 0.23 -0.9 656,787 + GFF658 0.24 -2.4 656,787 + GFF658 0.24 -1.2 656,787 + GFF658 0.24 -0.5 656,795 - GFF658 0.24 -0.1 656,795 - GFF658 0.24 -0.2 656,835 + GFF658 0.26 -1.5 656,835 + GFF658 0.26 -1.0 656,838 - GFF658 0.26 -0.6 656,840 + GFF658 0.26 -1.6 656,840 + GFF658 0.26 -0.5 656,843 - GFF658 0.26 -0.4 656,848 - GFF658 0.26 -1.0 656,848 - GFF658 0.26 -1.1 656,851 + GFF658 0.26 -1.4 656,851 + GFF658 0.26 -0.3 656,854 - GFF658 0.26 -1.1 656,856 + GFF658 0.26 -1.2 656,856 + GFF658 0.26 -1.4 656,856 + GFF658 0.26 -1.9 656,856 + GFF658 0.26 -0.8 656,856 + GFF658 0.26 -1.2 656,856 + GFF658 0.26 -0.9 656,856 + GFF658 0.26 -0.1 656,856 + GFF658 0.26 -0.9 656,856 + GFF658 0.26 -1.7 656,859 - GFF658 0.27 -0.8 656,864 - GFF658 0.27 -2.3 656,864 - GFF658 0.27 +0.4 656,864 - GFF658 0.27 +0.1 656,864 - GFF658 0.27 -0.0 656,864 - GFF658 0.27 +0.2 656,864 - GFF658 0.27 +0.2 656,864 - GFF658 0.27 -0.6 656,864 - GFF658 0.27 -0.0 656,864 - GFF658 0.27 -0.3 656,864 - GFF658 0.27 -0.3 656,864 - GFF658 0.27 +0.5 656,871 + GFF658 0.27 +0.4 656,877 + GFF658 0.27 -1.2 656,879 - GFF658 0.27 -0.8 656,879 - GFF658 0.27 -0.5 656,879 - GFF658 0.27 -0.5 656,884 + GFF658 0.27 -0.5 656,890 - GFF658 0.28 -0.3 656,892 - GFF658 0.28 -1.7 656,908 - GFF658 0.28 -1.3 656,946 + GFF658 0.30 -0.4 656,951 - GFF658 0.30 -0.1 656,956 - GFF658 0.30 -0.9 656,983 - GFF658 0.31 -0.9 656,983 - GFF658 0.31 +0.2 656,988 - GFF658 0.31 -1.0 657,052 - GFF658 0.34 +0.7
Or see this region's nucleotide sequence