Strain Fitness in Sphingobium sp. HT1-2 around GFF60

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
50,327	+				+0.1
50,327	+				-1.1
50,327	+				-1.1
50,327	+				-1.1
50,333	+				-1.5
50,333	+				-0.9
50,335	-				-0.9
50,335	-				-0.2
50,335	-				+0.5
50,335	-				+1.0
50,335	-				-0.3
50,335	-				-1.4
50,335	-				-0.2
50,335	-				+0.0
50,335	-				-0.8
50,335	-				-0.7
50,336	-				-1.3
50,336	-				-0.6
50,341	-				-0.4
50,348	+				-0.9
50,384	+				-2.1
50,401	+				-1.2
50,401	+				-0.6
50,416	+				-1.3
50,423	-				+0.5
50,423	-				-1.3
50,424	-				-1.3
50,427	+				-1.9
50,427	+				-2.2
50,438	+				-0.9
50,438	+				-2.8
50,438	+				-0.4
50,438	+				-1.3
50,443	+				-0.9
50,446	-				+0.8
50,446	-				-0.9
50,446	-				-1.1
50,446	-				+1.6
50,446	-				-1.4
50,454	-				-1.1
50,508	-				-0.5
50,508	-				+1.1
50,534	+				+0.7
50,535	+				-1.2
50,535	+				-1.2
50,543	-				-0.5
50,603	-				-2.2
50,604	+				-1.1
50,614	+				-1.8
50,614	+				-1.3
50,622	-				-0.5
50,622	-				-1.3
50,640	-				-0.6
50,647	+				-0.4
50,655	-				-0.8
50,679	+				-2.1
50,680	+				-0.6
50,731	+		GFF60	0.12	-1.0
50,731	+		GFF60	0.12	-0.4
50,732	+		GFF60	0.12	-0.4
50,732	+		GFF60	0.12	-1.0
50,742	+		GFF60	0.12	-1.1
50,765	-		GFF60	0.13	-1.4
50,767	+		GFF60	0.13	-2.1
50,783	+		GFF60	0.13	+0.0
50,783	+		GFF60	0.13	-1.9
50,783	+		GFF60	0.13	+0.1
50,783	+		GFF60	0.13	-1.3
50,783	+		GFF60	0.13	-0.5
50,783	+		GFF60	0.13	-1.9
50,783	+		GFF60	0.13	-2.1
50,783	+		GFF60	0.13	-1.5
50,783	+		GFF60	0.13	-0.3
50,785	+		GFF60	0.14	-1.6
50,785	+		GFF60	0.14	-0.7
50,791	-		GFF60	0.14	-1.6
50,791	-		GFF60	0.14	-0.2
50,791	-		GFF60	0.14	-0.8
50,798	-		GFF60	0.14	-3.4
50,798	-		GFF60	0.14	-0.4
50,813	+		GFF60	0.15	-0.5
50,813	+		GFF60	0.15	-1.7
50,813	+		GFF60	0.15	-0.3
50,816	-		GFF60	0.15	-1.5
50,818	+		GFF60	0.15	+0.6
50,821	-		GFF60	0.15	-2.8
50,821	-		GFF60	0.15	-1.0
50,826	-		GFF60	0.15	-0.2
50,860	-		GFF60	0.16	-0.8
50,876	+		GFF60	0.17	-1.0
50,884	-		GFF60	0.17	-1.7
50,899	+		GFF60	0.18	-1.6
50,956	+		GFF60	0.20	-0.3
50,956	+		GFF60	0.20	-0.4
50,956	+		GFF60	0.20	-0.2
50,956	+		GFF60	0.20	-0.3
50,956	+		GFF60	0.20	-1.2
50,959	-		GFF60	0.20	-0.8
50,964	-		GFF60	0.20	-0.2
50,964	-		GFF60	0.20	-1.4
50,970	+		GFF60	0.20	-0.5
50,991	+		GFF60	0.21	-1.8
51,021	-		GFF60	0.22	-1.6
51,034	+		GFF60	0.23	-1.8
51,034	+		GFF60	0.23	-2.3
51,035	+		GFF60	0.23	-2.1
51,073	+		GFF60	0.24	-1.5
51,073	+		GFF60	0.24	-1.1
51,073	+		GFF60	0.24	-0.6
51,073	+		GFF60	0.24	-0.4
51,079	-		GFF60	0.24	-0.1
51,081	-		GFF60	0.24	-0.2
51,081	-		GFF60	0.24	-0.5
51,081	-		GFF60	0.24	-0.5
51,084	-		GFF60	0.25	-0.8
51,095	+		GFF60	0.25	-1.3
51,095	+		GFF60	0.25	+0.1
51,103	-		GFF60	0.25	-1.3
51,103	-		GFF60	0.25	-0.3
51,128	+		GFF60	0.26	-1.5
51,128	+		GFF60	0.26	-1.3
51,128	+		GFF60	0.26	-0.5
51,136	-		GFF60	0.27	-1.0
51,163	+		GFF60	0.28	+0.7
51,163	+		GFF60	0.28	-1.4
51,163	+		GFF60	0.28	-0.2
51,171	-		GFF60	0.28	-0.6
51,179	+		GFF60	0.28	-0.7
51,179	+		GFF60	0.28	-1.3
51,184	+		GFF60	0.28	-1.2
51,191	+		GFF60	0.29	+0.5
51,191	+		GFF60	0.29	-0.7
51,205	+		GFF60	0.29	+0.2
51,205	+		GFF60	0.29	+0.1
51,205	+		GFF60	0.29	-0.6
51,230	+		GFF60	0.30	-1.7
51,230	+		GFF60	0.30	-1.9
51,230	+		GFF60	0.30	+0.3
51,230	+		GFF60	0.30	-0.1
51,230	+		GFF60	0.30	-0.7
51,230	+		GFF60	0.30	-2.2
51,233	-		GFF60	0.30	-0.9
51,238	-		GFF60	0.30	-0.1
51,238	-		GFF60	0.30	-0.7
51,238	-		GFF60	0.30	-1.3
51,238	-		GFF60	0.30	-1.6
51,238	-		GFF60	0.30	+0.3
51,278	+		GFF60	0.32	-0.4
51,278	+		GFF60	0.32	-1.9
51,283	+		GFF60	0.32	-1.4
51,286	-		GFF60	0.32	-0.6
51,286	-		GFF60	0.32	-0.5
51,295	+		GFF60	0.32	-1.1
51,316	+		GFF60	0.33	-1.3
51,316	+		GFF60	0.33	-1.1
51,324	-		GFF60	0.33	-0.3
51,349	-		GFF60	0.34	-0.3
51,372	-		GFF60	0.35	+1.1
51,395	+		GFF60	0.36	-2.0
51,409	-		GFF60	0.37	+0.8
51,455	+		GFF60	0.38	-1.9
51,463	-		GFF60	0.39	-1.3
51,476	+		GFF60	0.39	+0.3
51,479	+		GFF60	0.39	-0.4
51,484	+		GFF60	0.39	+0.1
51,485	+		GFF60	0.39	-0.2
51,490	+		GFF60	0.40	+0.2
51,490	+		GFF60	0.40	-1.3
51,490	+		GFF60	0.40	-0.6
51,490	+		GFF60	0.40	-0.3
51,490	+		GFF60	0.40	-0.2
51,498	-		GFF60	0.40	-0.7
51,498	-		GFF60	0.40	-0.6
51,498	-		GFF60	0.40	-0.3
51,498	-		GFF60	0.40	-0.3
51,498	-		GFF60	0.40	-0.5
51,500	+		GFF60	0.40	-1.9
51,500	+		GFF60	0.40	-1.0
51,500	+		GFF60	0.40	-0.4
51,500	+		GFF60	0.40	-2.1
51,500	+		GFF60	0.40	-2.3
51,500	+		GFF60	0.40	+0.2
51,500	+		GFF60	0.40	-0.5
51,500	+		GFF60	0.40	-1.7
51,500	+		GFF60	0.40	-0.6
51,500	+		GFF60	0.40	-0.8
51,500	+		GFF60	0.40	-0.8
51,500	+		GFF60	0.40	-0.7
51,508	-		GFF60	0.40	-1.5
51,508	-		GFF60	0.40	-1.1
51,508	-		GFF60	0.40	-0.3
51,508	-		GFF60	0.40	-0.5
51,508	-		GFF60	0.40	-0.3
51,508	-		GFF60	0.40	-1.8
51,508	-		GFF60	0.40	-0.4
51,508	-		GFF60	0.40	+0.0
51,508	-		GFF60	0.40	-1.7
51,508	-		GFF60	0.40	-0.9
51,508	-		GFF60	0.40	-0.3
51,508	-		GFF60	0.40	-0.2
51,508	-		GFF60	0.40	-1.6
51,508	-		GFF60	0.40	-2.4
51,508	-		GFF60	0.40	-1.9
51,508	-		GFF60	0.40	-1.6
51,508	-		GFF60	0.40	+0.9
51,515	+		GFF60	0.41	-1.9
51,518	-		GFF60	0.41	-0.1
51,523	-		GFF60	0.41	-0.2
51,523	-		GFF60	0.41	-0.8
51,525	+		GFF60	0.41	-1.3
51,531	+		GFF60	0.41	+0.5
51,534	-		GFF60	0.41	-0.8
51,538	+		GFF60	0.41	-1.3
51,567	-		GFF60	0.42	+0.3
51,569	+		GFF60	0.43	-1.5
51,569	+		GFF60	0.43	-0.9
51,569	+		GFF60	0.43	-1.7
51,574	+		GFF60	0.43	-0.8
51,577	-		GFF60	0.43	-0.2
51,577	-		GFF60	0.43	+0.3
51,582	-		GFF60	0.43	+0.0
51,598	-		GFF60	0.44	-0.4
51,598	-		GFF60	0.44	-1.1
51,636	-		GFF60	0.45	-0.5
51,636	-		GFF60	0.45	+0.0
51,665	+		GFF60	0.46	-1.1
51,665	+		GFF60	0.46	-0.2
51,665	+		GFF60	0.46	-0.2
51,670	+		GFF60	0.46	-0.7
51,670	+		GFF60	0.46	-0.1
51,670	+		GFF60	0.46	-1.9
51,673	-		GFF60	0.46	+0.9
51,678	-		GFF60	0.47	-0.2
51,678	-		GFF60	0.47	-1.5
51,740	-		GFF60	0.49	-0.6
51,742	-		GFF60	0.49	-1.0
51,749	+		GFF60	0.49	-0.2
51,754	+		GFF60	0.49	-0.6
51,754	+		GFF60	0.49	+0.2
51,754	+		GFF60	0.49	-0.2
51,767	+		GFF60	0.50	-1.9
51,818	+		GFF60	0.52	+0.7
51,822	+		GFF60	0.52	-1.3
51,831	-		GFF60	0.52	-1.5
51,834	-		GFF60	0.52	-1.0
51,834	-		GFF60	0.52	-0.7
51,845	+		GFF60	0.53	-0.0
51,874	+		GFF60	0.54	-0.2
51,883	+		GFF60	0.54	-1.5
51,884	+		GFF60	0.54	+0.9
51,884	+		GFF60	0.54	-0.2
51,884	+		GFF60	0.54	-1.7
51,887	-		GFF60	0.54	-1.4
51,887	-		GFF60	0.54	-0.8
51,891	-		GFF60	0.54	-0.3
51,931	+		GFF60	0.56	-1.1
51,937	-		GFF60	0.56	-0.4
51,944	-		GFF60	0.56	+0.5
51,964	+		GFF60	0.57	-1.4
51,972	+		GFF60	0.57	-0.8
51,976	-		GFF60	0.58	-2.2
51,977	+		GFF60	0.58	-1.3
51,977	+		GFF60	0.58	-1.9
51,977	+		GFF60	0.58	-0.3
51,977	+		GFF60	0.58	-0.8
51,977	+		GFF60	0.58	-1.1
51,977	+		GFF60	0.58	-1.4
51,977	+		GFF60	0.58	-0.7
51,985	-		GFF60	0.58	-1.4
51,985	-		GFF60	0.58	-1.1
52,007	+		GFF60	0.59	-0.4
52,007	-		GFF60	0.59	-2.1
52,015	-		GFF60	0.59	-0.8
52,031	+		GFF60	0.60	-0.2
52,043	-		GFF60	0.60	-0.2
52,069	+		GFF60	0.61	-2.5
52,069	+		GFF60	0.61	-0.9
52,072	-		GFF60	0.61	-0.5
52,074	+		GFF60	0.61	-1.3
52,092	+		GFF60	0.62	-2.2
52,092	+		GFF60	0.62	+0.9
52,092	-		GFF60	0.62	-0.3
52,129	-		GFF60	0.63	+0.0
52,131	+		GFF60	0.63	-0.2
52,137	-		GFF60	0.64	-0.4
52,161	+		GFF60	0.64	-1.1
52,161	+		GFF60	0.64	-0.7
52,163	-		GFF60	0.65	-1.1
52,168	-		GFF60	0.65	-0.7
52,171	+		GFF60	0.65	-0.5
52,171	+		GFF60	0.65	-2.4
52,171	+		GFF60	0.65	-1.4
52,171	+		GFF60	0.65	-1.4
52,171	+		GFF60	0.65	-2.5
52,171	+		GFF60	0.65	-1.7
52,171	+		GFF60	0.65	-0.1
52,171	+		GFF60	0.65	-0.6
52,171	+		GFF60	0.65	+1.3
52,171	+		GFF60	0.65	-1.3
52,171	+		GFF60	0.65	-1.4
52,174	-		GFF60	0.65	-1.5
52,179	-		GFF60	0.65	-1.7
52,179	-		GFF60	0.65	+0.1
52,179	-		GFF60	0.65	-1.6
52,179	-		GFF60	0.65	-0.2
52,179	-		GFF60	0.65	-1.0
52,179	-		GFF60	0.65	-1.1
52,179	-		GFF60	0.65	-1.9
52,179	-		GFF60	0.65	-1.1
52,179	-		GFF60	0.65	-0.7
52,179	-		GFF60	0.65	-1.3
52,179	-		GFF60	0.65	-1.1
52,181	+		GFF60	0.65	-0.3
52,181	+		GFF60	0.65	-1.3
52,187	+		GFF60	0.65	-2.2
52,189	-		GFF60	0.66	-1.2
52,202	+		GFF60	0.66	-1.5
52,209	+		GFF60	0.66	-0.8
52,210	-		GFF60	0.66	-1.9
52,210	-		GFF60	0.66	-2.6
52,212	-		GFF60	0.66	-0.4
52,215	-		GFF60	0.66	-0.9
52,217	-		GFF60	0.67	-0.5
52,224	+		GFF60	0.67	-1.3
52,224	+		GFF60	0.67	-1.4
52,224	+		GFF60	0.67	+0.4
52,282	-		GFF60	0.69	-0.3
52,306	+		GFF60	0.70	-0.1
52,316	-		GFF60	0.70	-1.3
52,320	+		GFF60	0.70	-1.2
52,338	+		GFF60	0.71	-2.5
52,338	-		GFF60	0.71	-2.1
52,338	-		GFF60	0.71	-2.1
52,338	-		GFF60	0.71	-1.9
52,339	-		GFF60	0.71	-0.6
52,346	-		GFF60	0.71	-1.0
52,346	-		GFF60	0.71	-1.0
52,348	+		GFF60	0.71	-2.5
52,403	+		GFF60	0.73	-0.1
52,405	+		GFF60	0.74	-0.5
52,405	+		GFF60	0.74	-1.0
52,405	+		GFF60	0.74	-0.2
52,405	+		GFF60	0.74	-1.9
52,411	+		GFF60	0.74	-0.8
52,413	-		GFF60	0.74	-1.3
52,418	+		GFF60	0.74	-1.7
52,425	+		GFF60	0.74	-0.3
52,425	+		GFF60	0.74	-2.5
52,425	+		GFF60	0.74	-1.4
52,457	-		GFF60	0.75	-1.6
52,483	-		GFF60	0.76	+0.4
52,502	+		GFF60	0.77	+0.0
52,510	-		GFF60	0.77	-1.6
52,512	+		GFF60	0.77	-1.7
52,522	-		GFF60	0.78	+0.6
52,529	+		GFF60	0.78	-0.5
52,546	+		GFF60	0.79	-0.5
52,546	+		GFF60	0.79	-1.5
52,552	-		GFF60	0.79	-1.5
52,554	-		GFF60	0.79	-1.4
52,554	-		GFF60	0.79	-1.4
52,561	+		GFF60	0.79	-1.6
52,576	+		GFF60	0.80	-0.6
52,579	-		GFF60	0.80	-0.5
52,579	-		GFF60	0.80	-0.6
52,601	+		GFF60	0.81	-0.7
52,634	-		GFF60	0.82	-0.2
52,640	-		GFF60	0.82	-1.4
52,642	+		GFF60	0.82	-0.4
52,742	+		GFF60	0.86	-1.6
52,742	+		GFF60	0.86	-2.5
52,750	-		GFF60	0.86	-0.6
52,752	-		GFF60	0.86	-1.3
52,794	+		GFF60	0.88	-1.0
52,794	+		GFF60	0.88	-1.1
52,794	+		GFF60	0.88	+0.4
52,794	-		GFF60	0.88	-1.6
52,835	-		GFF60	0.89	-0.7
52,854	+				-1.0
52,894	+				-0.5
52,914	+				-1.2
52,922	-				+0.0
52,927	-				-0.5
52,974	+				+0.5
52,986	+				-1.6
53,062	-				-1.9
53,062	-				+0.0
53,064	+				-1.4
53,092	+				+0.6
53,134	+				-1.0
53,139	+				-0.7
53,164	+				-0.7
53,164	+				-0.4
53,164	+				-0.4
53,164	+				-1.1
53,164	+				-1.1
53,164	+				-1.4
53,164	+				-1.1
53,164	+				+2.1
53,164	+				-0.9
53,164	+				+0.7
53,164	+				+1.8
53,164	+				-0.4
53,164	+				-0.3
53,164	+				+0.5
53,169	+				+1.3
53,171	-				-0.5
53,172	-				-0.9
53,172	-				-1.6
53,172	-				-1.2
53,172	-				-2.0
53,172	-				+0.2
53,172	-				-0.5
53,172	-				-0.9
53,177	-				+1.1
53,177	-				+1.4
53,195	+				-0.7
53,195	-				+0.7
53,241	+		GFF61	0.15	+0.5
53,244	-		GFF61	0.16	-0.6
53,249	-		GFF61	0.17	-0.3
53,249	-		GFF61	0.17	+0.5
53,288	-		GFF61	0.25	-0.1
53,307	+		GFF61	0.29	+0.0
53,342	-		GFF61	0.36	-0.3
53,391	+		GFF61	0.46	-0.8
53,399	-		GFF61	0.47	-0.7
53,414	-		GFF61	0.50	+0.1
53,414	-		GFF61	0.50	+0.2
53,502	-		GFF61	0.68	+0.4
53,517	-		GFF61	0.71	+0.0
53,524	+		GFF61	0.73	-0.7
53,528	+		GFF61	0.74	-0.3
53,531	-		GFF61	0.74	+1.5
53,532	-		GFF61	0.74	-1.4
53,538	+		GFF61	0.76	-0.1
53,543	+		GFF61	0.77	-0.5
53,598	+		GFF61	0.88	-1.6
53,605	+		GFF61	0.89	+0.7
53,605	-		GFF61	0.89	-1.6
53,607	+		GFF61	0.90	-0.2
53,617	+				-0.6
53,622	-				-0.7
53,628	-				-1.1
53,628	-				+1.1
53,630	+				-0.1
53,693	+				-0.8
53,701	-				+1.0
53,712	+				-0.9
53,727	-				-0.7
53,792	-				+0.6
53,812	-		GFF62	0.19	+1.1
53,812	-		GFF62	0.19	-1.3
53,819	-		GFF62	0.29	+0.8
53,902	-				-0.4
53,907	+				-0.1
53,977	-				+0.5
53,981	+				+0.0
53,988	+				+0.7
53,988	+				+0.5
53,988	+				-0.1
53,988	+				-0.6
53,988	+				-1.1
53,988	+				-0.2
53,996	-				+0.6
54,010	+		GFF63	0.17	-1.5
54,022	+		GFF63	0.24	-1.1
54,035	+		GFF63	0.31	+0.3
54,035	+		GFF63	0.31	-0.3
54,035	+		GFF63	0.31	-0.6
54,043	-		GFF63	0.36	+0.7
54,044	-		GFF63	0.36	-0.6
54,075	+		GFF63	0.53	+0.1
54,092	+		GFF63	0.63	-0.3
54,105	+		GFF63	0.70	-0.5
54,113	-		GFF63	0.74	+0.3
54,113	-		GFF63	0.74	-1.5
54,119	+		GFF63	0.78	+1.0
54,119	+		GFF63	0.78	+0.7