Strain Fitness in Sphingobium sp. HT1-2 around GFF596

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF594 and GFF595 are separated by 207 nucleotidesGFF595 and GFF596 are separated by 69 nucleotidesGFF596 and GFF597 are separated by 151 nucleotides GFF594 - N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28), at 596,182 to 597,462 GFF594 GFF595 - hypothetical protein, at 597,670 to 597,912 GFF595 GFF596 - Ribonuclease E (EC 3.1.26.12), at 597,982 to 600,708 GFF596 GFF597 - Bll4295 protein, at 600,860 to 602,206 GFF597 Position (kb) 597 598 599 600 601Strain fitness (log2 ratio) -2 -1 0 1 2at 597.013 kb on + strand, within GFF594at 597.038 kb on + strand, within GFF594at 597.038 kb on + strand, within GFF594at 597.076 kb on + strand, within GFF594at 597.095 kb on + strand, within GFF594at 597.095 kb on + strand, within GFF594at 597.095 kb on + strand, within GFF594at 597.108 kb on - strand, within GFF594at 597.125 kb on + strand, within GFF594at 597.136 kb on + strand, within GFF594at 597.137 kb on - strand, within GFF594at 597.158 kb on - strand, within GFF594at 597.169 kb on - strand, within GFF594at 597.185 kb on + strand, within GFF594at 597.190 kb on + strand, within GFF594at 597.190 kb on + strand, within GFF594at 597.229 kb on - strand, within GFF594at 597.247 kb on - strand, within GFF594at 597.251 kb on - strand, within GFF594at 597.257 kb on - strand, within GFF594at 597.266 kb on + strand, within GFF594at 597.290 kb on + strand, within GFF594at 597.336 kb on - strandat 597.339 kb on - strandat 597.386 kb on + strandat 597.386 kb on + strandat 597.386 kb on + strandat 597.386 kb on + strandat 597.386 kb on + strandat 597.386 kb on + strandat 597.394 kb on - strandat 597.407 kb on - strandat 597.515 kb on + strandat 597.515 kb on + strandat 597.539 kb on + strandat 597.593 kb on + strandat 597.612 kb on + strandat 597.612 kb on + strandat 597.634 kb on + strandat 597.741 kb on + strand, within GFF595at 597.756 kb on + strand, within GFF595at 597.779 kb on + strand, within GFF595at 597.810 kb on + strand, within GFF595at 597.818 kb on - strand, within GFF595at 597.827 kb on + strand, within GFF595at 597.827 kb on + strand, within GFF595at 599.657 kb on - strand, within GFF596at 599.740 kb on - strand, within GFF596at 599.967 kb on - strand, within GFF596at 600.117 kb on + strand, within GFF596at 600.276 kb on + strand, within GFF596at 600.276 kb on + strand, within GFF596at 600.387 kb on + strand, within GFF596at 600.393 kb on + strand, within GFF596at 600.395 kb on - strand, within GFF596at 600.495 kb on + strandat 600.495 kb on + strandat 600.584 kb on + strandat 600.594 kb on + strandat 600.594 kb on + strandat 600.594 kb on + strandat 600.653 kb on - strandat 600.680 kb on + strandat 600.726 kb on - strandat 600.818 kb on - strandat 600.829 kb on + strandat 600.837 kb on - strandat 600.843 kb on + strandat 600.843 kb on + strandat 600.851 kb on - strandat 600.872 kb on - strandat 600.906 kb on + strandat 600.912 kb on - strandat 600.918 kb on + strandat 600.928 kb on + strandat 600.931 kb on - strandat 600.931 kb on - strandat 600.934 kb on + strandat 600.936 kb on - strandat 600.936 kb on - strandat 600.936 kb on - strandat 600.956 kb on + strandat 600.976 kb on + strandat 600.991 kb on + strandat 600.991 kb on + strandat 600.991 kb on + strandat 600.994 kb on - strandat 600.999 kb on - strand, within GFF597at 600.999 kb on - strand, within GFF597at 600.999 kb on - strand, within GFF597at 601.020 kb on + strand, within GFF597at 601.022 kb on + strand, within GFF597at 601.022 kb on + strand, within GFF597at 601.022 kb on + strand, within GFF597at 601.090 kb on - strand, within GFF597at 601.119 kb on - strand, within GFF597at 601.119 kb on - strand, within GFF597at 601.119 kb on - strand, within GFF597at 601.119 kb on - strand, within GFF597at 601.127 kb on - strand, within GFF597at 601.146 kb on + strand, within GFF597at 601.146 kb on + strand, within GFF597at 601.151 kb on + strand, within GFF597at 601.154 kb on - strand, within GFF597at 601.154 kb on - strand, within GFF597at 601.159 kb on - strand, within GFF597at 601.164 kb on - strand, within GFF597at 601.166 kb on - strand, within GFF597at 601.171 kb on - strand, within GFF597at 601.173 kb on + strand, within GFF597at 601.181 kb on - strand, within GFF597at 601.188 kb on - strand, within GFF597at 601.215 kb on + strand, within GFF597at 601.217 kb on + strand, within GFF597at 601.222 kb on + strand, within GFF597at 601.228 kb on - strand, within GFF597at 601.230 kb on - strand, within GFF597at 601.235 kb on - strand, within GFF597at 601.235 kb on - strand, within GFF597at 601.235 kb on - strand, within GFF597at 601.245 kb on - strand, within GFF597at 601.247 kb on - strand, within GFF597at 601.271 kb on - strand, within GFF597at 601.271 kb on - strand, within GFF597at 601.284 kb on + strand, within GFF597at 601.297 kb on - strand, within GFF597at 601.320 kb on - strand, within GFF597at 601.383 kb on + strand, within GFF597at 601.383 kb on + strand, within GFF597at 601.383 kb on + strand, within GFF597at 601.383 kb on + strand, within GFF597at 601.397 kb on + strand, within GFF597at 601.410 kb on - strand, within GFF597at 601.415 kb on - strand, within GFF597at 601.462 kb on + strand, within GFF597at 601.470 kb on - strand, within GFF597at 601.497 kb on - strand, within GFF597at 601.504 kb on + strand, within GFF597at 601.504 kb on + strand, within GFF597at 601.521 kb on + strand, within GFF597at 601.522 kb on + strand, within GFF597at 601.522 kb on + strand, within GFF597at 601.524 kb on - strand, within GFF597at 601.525 kb on + strand, within GFF597at 601.525 kb on + strand, within GFF597at 601.530 kb on - strand, within GFF597at 601.530 kb on - strand, within GFF597at 601.553 kb on - strand, within GFF597at 601.555 kb on + strand, within GFF597at 601.555 kb on + strand, within GFF597at 601.588 kb on + strand, within GFF597at 601.588 kb on + strand, within GFF597at 601.588 kb on + strand, within GFF597at 601.588 kb on + strand, within GFF597at 601.596 kb on - strand, within GFF597at 601.596 kb on - strand, within GFF597at 601.596 kb on - strand, within GFF597at 601.596 kb on - strand, within GFF597at 601.603 kb on + strand, within GFF597at 601.634 kb on + strand, within GFF597at 601.642 kb on - strand, within GFF597at 601.644 kb on - strand, within GFF597

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate
remove
597,013 + GFF594 0.65 +0.8
597,038 + GFF594 0.67 +0.9
597,038 + GFF594 0.67 +0.7
597,076 + GFF594 0.70 +1.1
597,095 + GFF594 0.71 +0.9
597,095 + GFF594 0.71 -1.8
597,095 + GFF594 0.71 -1.0
597,108 - GFF594 0.72 -0.1
597,125 + GFF594 0.74 -0.5
597,136 + GFF594 0.74 +1.1
597,137 - GFF594 0.75 -1.0
597,158 - GFF594 0.76 +0.4
597,169 - GFF594 0.77 +0.5
597,185 + GFF594 0.78 +0.6
597,190 + GFF594 0.79 +0.9
597,190 + GFF594 0.79 -1.8
597,229 - GFF594 0.82 +0.8
597,247 - GFF594 0.83 +0.4
597,251 - GFF594 0.83 -0.5
597,257 - GFF594 0.84 -0.1
597,266 + GFF594 0.85 -0.9
597,290 + GFF594 0.86 -0.9
597,336 - +0.3
597,339 - +1.0
597,386 + +0.8
597,386 + -1.1
597,386 + -0.4
597,386 + -0.1
597,386 + -0.2
597,386 + -0.3
597,394 - +0.3
597,407 - -0.6
597,515 + +0.0
597,515 + -0.3
597,539 + +0.9
597,593 + +0.3
597,612 + +0.4
597,612 + -1.4
597,634 + +1.2
597,741 + GFF595 0.29 -1.3
597,756 + GFF595 0.35 +0.4
597,779 + GFF595 0.45 +0.1
597,810 + GFF595 0.58 +0.5
597,818 - GFF595 0.61 +1.4
597,827 + GFF595 0.65 -0.5
597,827 + GFF595 0.65 +0.9
599,657 - GFF596 0.61 -0.5
599,740 - GFF596 0.64 +0.4
599,967 - GFF596 0.73 +0.4
600,117 + GFF596 0.78 +0.2
600,276 + GFF596 0.84 -0.1
600,276 + GFF596 0.84 -1.2
600,387 + GFF596 0.88 -0.8
600,393 + GFF596 0.88 +0.2
600,395 - GFF596 0.88 -0.9
600,495 + +1.0
600,495 + +0.5
600,584 + -0.8
600,594 + -1.3
600,594 + -0.6
600,594 + +0.3
600,653 - +0.6
600,680 + +0.3
600,726 - +0.2
600,818 - -0.5
600,829 + +0.1
600,837 - -0.6
600,843 + +1.1
600,843 + +1.0
600,851 - +0.2
600,872 - -0.2
600,906 + -0.6
600,912 - -0.1
600,918 + -1.1
600,928 + -0.7
600,931 - +0.3
600,931 - -0.9
600,934 + +0.9
600,936 - -0.7
600,936 - +0.5
600,936 - -1.1
600,956 + -1.3
600,976 + +1.8
600,991 + -1.1
600,991 + +1.8
600,991 + +0.9
600,994 - -0.4
600,999 - GFF597 0.10 +1.0
600,999 - GFF597 0.10 +0.4
600,999 - GFF597 0.10 +1.5
601,020 + GFF597 0.12 -0.9
601,022 + GFF597 0.12 +1.6
601,022 + GFF597 0.12 -2.5
601,022 + GFF597 0.12 -0.5
601,090 - GFF597 0.17 +0.7
601,119 - GFF597 0.19 -0.7
601,119 - GFF597 0.19 -1.3
601,119 - GFF597 0.19 +0.3
601,119 - GFF597 0.19 -0.4
601,127 - GFF597 0.20 -0.9
601,146 + GFF597 0.21 +0.3
601,146 + GFF597 0.21 -1.4
601,151 + GFF597 0.22 +0.3
601,154 - GFF597 0.22 -1.2
601,154 - GFF597 0.22 -0.1
601,159 - GFF597 0.22 +0.2
601,164 - GFF597 0.23 +0.8
601,166 - GFF597 0.23 -0.6
601,171 - GFF597 0.23 +0.4
601,173 + GFF597 0.23 +0.8
601,181 - GFF597 0.24 +1.1
601,188 - GFF597 0.24 +0.3
601,215 + GFF597 0.26 -1.2
601,217 + GFF597 0.27 +1.3
601,222 + GFF597 0.27 +0.7
601,228 - GFF597 0.27 +0.2
601,230 - GFF597 0.27 -0.8
601,235 - GFF597 0.28 -0.7
601,235 - GFF597 0.28 -1.7
601,235 - GFF597 0.28 -0.4
601,245 - GFF597 0.29 +0.3
601,247 - GFF597 0.29 -0.4
601,271 - GFF597 0.31 -0.7
601,271 - GFF597 0.31 -2.0
601,284 + GFF597 0.31 +0.4
601,297 - GFF597 0.32 -0.4
601,320 - GFF597 0.34 +0.2
601,383 + GFF597 0.39 +0.5
601,383 + GFF597 0.39 -1.5
601,383 + GFF597 0.39 +0.0
601,383 + GFF597 0.39 +1.4
601,397 + GFF597 0.40 +0.1
601,410 - GFF597 0.41 +0.4
601,415 - GFF597 0.41 -0.6
601,462 + GFF597 0.45 +0.6
601,470 - GFF597 0.45 -0.9
601,497 - GFF597 0.47 +0.1
601,504 + GFF597 0.48 +0.5
601,504 + GFF597 0.48 +0.3
601,521 + GFF597 0.49 -0.2
601,522 + GFF597 0.49 -1.6
601,522 + GFF597 0.49 -0.4
601,524 - GFF597 0.49 -0.8
601,525 + GFF597 0.49 -1.5
601,525 + GFF597 0.49 -1.1
601,530 - GFF597 0.50 -0.7
601,530 - GFF597 0.50 -1.7
601,553 - GFF597 0.51 +0.7
601,555 + GFF597 0.52 +0.4
601,555 + GFF597 0.52 -0.3
601,588 + GFF597 0.54 -0.5
601,588 + GFF597 0.54 -0.3
601,588 + GFF597 0.54 +0.4
601,588 + GFF597 0.54 -1.2
601,596 - GFF597 0.55 -1.6
601,596 - GFF597 0.55 -1.5
601,596 - GFF597 0.55 +1.2
601,596 - GFF597 0.55 -0.7
601,603 + GFF597 0.55 +0.3
601,634 + GFF597 0.57 +0.0
601,642 - GFF597 0.58 +0.8
601,644 - GFF597 0.58 -1.1

Or see this region's nucleotide sequence