Strain Fitness in Sphingobium sp. HT1-2 around GFF583

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF581 and GFF582 are separated by 256 nucleotidesGFF582 and GFF583 are separated by 109 nucleotidesGFF583 and GFF584 are separated by 66 nucleotidesGFF584 and GFF585 overlap by 4 nucleotides GFF581 - Aminopeptidase N, at 580,070 to 582,718 GFF581 GFF582 - NADPH-dependent 7-cyano-7-deazaguanine reductase (EC 1.7.1.13), at 582,975 to 583,427 GFF582 GFF583 - hypothetical protein, at 583,537 to 584,853 GFF583 GFF584 - 3-mercaptopyruvate sulfurtransferase (EC 2.8.1.2), at 584,920 to 585,768 GFF584 GFF585 - Cystathionine beta-lyase (EC 4.4.1.8), at 585,765 to 586,973 GFF585 Position (kb) 583 584 585Strain fitness (log2 ratio) -2 -1 0 1 2at 582.573 kb on - strandat 582.584 kb on + strandat 582.586 kb on + strandat 582.604 kb on + strandat 582.607 kb on - strandat 582.607 kb on - strandat 582.634 kb on - strandat 582.644 kb on - strandat 582.646 kb on + strandat 582.650 kb on - strandat 582.650 kb on - strandat 582.650 kb on - strandat 582.650 kb on - strandat 582.650 kb on - strandat 582.650 kb on - strandat 582.650 kb on - strandat 582.650 kb on - strandat 582.695 kb on + strandat 582.713 kb on + strandat 582.713 kb on + strandat 582.784 kb on - strandat 582.791 kb on + strandat 582.799 kb on - strandat 582.806 kb on + strandat 582.818 kb on - strandat 582.838 kb on - strandat 582.841 kb on + strandat 582.893 kb on - strandat 582.898 kb on - strandat 582.908 kb on - strandat 582.951 kb on + strandat 582.958 kb on + strandat 582.973 kb on + strandat 583.188 kb on + strand, within GFF582at 583.193 kb on + strand, within GFF582at 583.205 kb on - strand, within GFF582at 583.321 kb on + strand, within GFF582at 583.364 kb on - strand, within GFF582at 583.390 kb on + strandat 583.398 kb on - strandat 583.398 kb on - strandat 583.415 kb on + strandat 583.415 kb on + strandat 583.488 kb on - strandat 583.525 kb on + strandat 583.525 kb on + strandat 583.525 kb on + strandat 583.531 kb on - strandat 583.533 kb on - strandat 583.550 kb on + strandat 583.558 kb on - strandat 583.580 kb on - strandat 583.599 kb on - strandat 583.695 kb on + strand, within GFF583at 583.700 kb on + strand, within GFF583at 583.700 kb on + strand, within GFF583at 583.700 kb on + strand, within GFF583at 583.700 kb on + strand, within GFF583at 583.708 kb on - strand, within GFF583at 583.708 kb on - strand, within GFF583at 583.760 kb on + strand, within GFF583at 583.760 kb on + strand, within GFF583at 583.760 kb on + strand, within GFF583at 583.760 kb on + strand, within GFF583at 583.760 kb on + strand, within GFF583at 583.766 kb on + strand, within GFF583at 583.766 kb on - strand, within GFF583at 583.768 kb on - strand, within GFF583at 583.784 kb on - strand, within GFF583at 583.797 kb on + strand, within GFF583at 583.807 kb on + strand, within GFF583at 583.814 kb on + strand, within GFF583at 583.814 kb on + strand, within GFF583at 583.842 kb on + strand, within GFF583at 583.842 kb on + strand, within GFF583at 583.844 kb on + strand, within GFF583at 583.844 kb on + strand, within GFF583at 583.844 kb on + strand, within GFF583at 583.844 kb on + strand, within GFF583at 583.850 kb on - strand, within GFF583at 583.852 kb on - strand, within GFF583at 583.852 kb on - strand, within GFF583at 583.852 kb on - strand, within GFF583at 583.868 kb on + strand, within GFF583at 583.868 kb on + strand, within GFF583at 583.868 kb on + strand, within GFF583at 583.868 kb on + strand, within GFF583at 583.868 kb on + strand, within GFF583at 583.868 kb on + strand, within GFF583at 583.876 kb on - strand, within GFF583at 583.876 kb on - strand, within GFF583at 583.876 kb on - strand, within GFF583at 583.876 kb on - strand, within GFF583at 583.876 kb on - strand, within GFF583at 583.876 kb on - strand, within GFF583at 583.876 kb on - strand, within GFF583at 583.876 kb on - strand, within GFF583at 583.876 kb on - strand, within GFF583at 583.876 kb on - strand, within GFF583at 583.876 kb on - strand, within GFF583at 583.917 kb on + strand, within GFF583at 583.917 kb on + strand, within GFF583at 583.917 kb on + strand, within GFF583at 583.917 kb on + strand, within GFF583at 583.917 kb on + strand, within GFF583at 583.920 kb on - strand, within GFF583at 583.925 kb on - strand, within GFF583at 583.925 kb on - strand, within GFF583at 583.925 kb on - strand, within GFF583at 583.925 kb on - strand, within GFF583at 583.925 kb on - strand, within GFF583at 583.950 kb on - strand, within GFF583at 583.992 kb on + strand, within GFF583at 583.995 kb on - strand, within GFF583at 584.000 kb on - strand, within GFF583at 584.000 kb on - strand, within GFF583at 584.014 kb on + strand, within GFF583at 584.014 kb on + strand, within GFF583at 584.014 kb on + strand, within GFF583at 584.014 kb on + strand, within GFF583at 584.014 kb on + strand, within GFF583at 584.014 kb on + strand, within GFF583at 584.022 kb on - strand, within GFF583at 584.022 kb on - strand, within GFF583at 584.022 kb on - strand, within GFF583at 584.070 kb on + strand, within GFF583at 584.070 kb on + strand, within GFF583at 584.078 kb on - strand, within GFF583at 584.106 kb on + strand, within GFF583at 584.130 kb on + strand, within GFF583at 584.155 kb on + strand, within GFF583at 584.157 kb on + strand, within GFF583at 584.184 kb on + strand, within GFF583at 584.189 kb on + strand, within GFF583at 584.189 kb on + strand, within GFF583at 584.194 kb on + strand, within GFF583at 584.206 kb on + strand, within GFF583at 584.206 kb on + strand, within GFF583at 584.206 kb on + strand, within GFF583at 584.214 kb on - strand, within GFF583at 584.216 kb on + strand, within GFF583at 584.216 kb on + strand, within GFF583at 584.234 kb on - strand, within GFF583at 584.234 kb on - strand, within GFF583at 584.239 kb on - strand, within GFF583at 584.258 kb on - strand, within GFF583at 584.279 kb on + strand, within GFF583at 584.279 kb on + strand, within GFF583at 584.287 kb on - strand, within GFF583at 584.306 kb on + strand, within GFF583at 584.306 kb on + strand, within GFF583at 584.311 kb on + strand, within GFF583at 584.314 kb on - strand, within GFF583at 584.348 kb on + strand, within GFF583at 584.365 kb on + strand, within GFF583at 584.393 kb on - strand, within GFF583at 584.393 kb on - strand, within GFF583at 584.402 kb on + strand, within GFF583at 584.402 kb on + strand, within GFF583at 584.402 kb on + strand, within GFF583at 584.447 kb on + strand, within GFF583at 584.455 kb on - strand, within GFF583at 584.455 kb on - strand, within GFF583at 584.455 kb on - strand, within GFF583at 584.455 kb on - strand, within GFF583at 584.463 kb on - strand, within GFF583at 584.463 kb on - strand, within GFF583at 584.464 kb on + strand, within GFF583at 584.464 kb on + strand, within GFF583at 584.464 kb on + strand, within GFF583at 584.472 kb on - strand, within GFF583at 584.477 kb on - strand, within GFF583at 584.485 kb on - strand, within GFF583at 584.546 kb on - strand, within GFF583at 584.546 kb on - strand, within GFF583at 584.548 kb on - strand, within GFF583at 584.562 kb on + strand, within GFF583at 584.570 kb on - strand, within GFF583at 584.570 kb on - strand, within GFF583at 584.570 kb on - strand, within GFF583at 584.580 kb on - strand, within GFF583at 584.590 kb on - strand, within GFF583at 584.604 kb on + strand, within GFF583at 584.606 kb on - strand, within GFF583at 584.612 kb on - strand, within GFF583at 584.654 kb on - strand, within GFF583at 584.671 kb on + strand, within GFF583at 584.679 kb on - strand, within GFF583at 584.688 kb on + strand, within GFF583at 584.701 kb on + strand, within GFF583at 584.715 kb on - strand, within GFF583at 584.730 kb on - strandat 584.749 kb on - strandat 584.759 kb on - strandat 584.890 kb on - strandat 584.890 kb on - strandat 584.904 kb on + strandat 585.150 kb on + strand, within GFF584at 585.158 kb on - strand, within GFF584at 585.158 kb on - strand, within GFF584at 585.191 kb on + strand, within GFF584at 585.192 kb on + strand, within GFF584at 585.197 kb on + strand, within GFF584at 585.197 kb on + strand, within GFF584at 585.197 kb on + strand, within GFF584at 585.205 kb on - strand, within GFF584at 585.205 kb on - strand, within GFF584at 585.212 kb on - strand, within GFF584at 585.229 kb on - strand, within GFF584at 585.239 kb on + strand, within GFF584at 585.239 kb on + strand, within GFF584at 585.239 kb on + strand, within GFF584at 585.239 kb on + strand, within GFF584at 585.239 kb on + strand, within GFF584at 585.244 kb on + strand, within GFF584at 585.247 kb on - strand, within GFF584at 585.247 kb on - strand, within GFF584at 585.247 kb on - strand, within GFF584at 585.247 kb on - strand, within GFF584at 585.247 kb on - strand, within GFF584at 585.280 kb on - strand, within GFF584at 585.290 kb on - strand, within GFF584at 585.290 kb on - strand, within GFF584at 585.348 kb on - strand, within GFF584at 585.365 kb on + strand, within GFF584at 585.372 kb on + strand, within GFF584at 585.464 kb on + strand, within GFF584at 585.469 kb on + strand, within GFF584at 585.499 kb on + strand, within GFF584at 585.501 kb on - strand, within GFF584at 585.518 kb on - strand, within GFF584at 585.527 kb on - strand, within GFF584at 585.541 kb on + strand, within GFF584at 585.551 kb on + strand, within GFF584at 585.554 kb on - strand, within GFF584at 585.559 kb on - strand, within GFF584at 585.559 kb on - strand, within GFF584at 585.561 kb on + strand, within GFF584at 585.568 kb on + strand, within GFF584at 585.596 kb on + strand, within GFF584at 585.654 kb on + strand, within GFF584at 585.666 kb on + strand, within GFF584at 585.689 kb on + strandat 585.713 kb on + strandat 585.721 kb on - strandat 585.744 kb on - strandat 585.748 kb on - strandat 585.759 kb on + strandat 585.776 kb on + strandat 585.776 kb on + strandat 585.784 kb on - strandat 585.786 kb on - strandat 585.786 kb on - strandat 585.806 kb on + strandat 585.840 kb on + strandat 585.848 kb on - strandat 585.852 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate
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582,573 - -1.4
582,584 + +0.2
582,586 + +0.4
582,604 + -0.2
582,607 - -0.2
582,607 - -0.0
582,634 - +0.4
582,644 - +0.0
582,646 + +0.4
582,650 - -1.2
582,650 - -0.9
582,650 - +1.4
582,650 - +0.3
582,650 - +1.5
582,650 - -0.7
582,650 - -0.1
582,650 - -0.9
582,695 + -0.4
582,713 + +1.2
582,713 + +0.2
582,784 - -2.0
582,791 + +1.1
582,799 - +0.7
582,806 + -1.0
582,818 - -1.8
582,838 - -0.7
582,841 + -0.8
582,893 - -1.5
582,898 - +1.3
582,908 - +0.6
582,951 + -1.5
582,958 + -0.2
582,973 + +1.0
583,188 + GFF582 0.47 -1.8
583,193 + GFF582 0.48 -0.1
583,205 - GFF582 0.51 -0.8
583,321 + GFF582 0.76 -1.0
583,364 - GFF582 0.86 +0.1
583,390 + +0.8
583,398 - -0.3
583,398 - -1.9
583,415 + +0.0
583,415 + -0.2
583,488 - -0.7
583,525 + -0.2
583,525 + +0.1
583,525 + +0.4
583,531 - +0.1
583,533 - -0.5
583,550 + -0.4
583,558 - -1.4
583,580 - +0.3
583,599 - +1.3
583,695 + GFF583 0.12 -1.0
583,700 + GFF583 0.12 -1.0
583,700 + GFF583 0.12 -2.7
583,700 + GFF583 0.12 +0.5
583,700 + GFF583 0.12 -1.5
583,708 - GFF583 0.13 +1.1
583,708 - GFF583 0.13 +1.1
583,760 + GFF583 0.17 +0.2
583,760 + GFF583 0.17 -0.8
583,760 + GFF583 0.17 +1.6
583,760 + GFF583 0.17 -0.4
583,760 + GFF583 0.17 +0.1
583,766 + GFF583 0.17 -0.0
583,766 - GFF583 0.17 +0.9
583,768 - GFF583 0.18 -0.6
583,784 - GFF583 0.19 -0.7
583,797 + GFF583 0.20 -0.2
583,807 + GFF583 0.21 -1.2
583,814 + GFF583 0.21 -0.6
583,814 + GFF583 0.21 +0.2
583,842 + GFF583 0.23 +1.8
583,842 + GFF583 0.23 -1.4
583,844 + GFF583 0.23 +1.1
583,844 + GFF583 0.23 -0.9
583,844 + GFF583 0.23 +0.5
583,844 + GFF583 0.23 -0.6
583,850 - GFF583 0.24 +0.2
583,852 - GFF583 0.24 +0.4
583,852 - GFF583 0.24 -0.5
583,852 - GFF583 0.24 +0.7
583,868 + GFF583 0.25 -0.9
583,868 + GFF583 0.25 +0.4
583,868 + GFF583 0.25 -1.7
583,868 + GFF583 0.25 +0.1
583,868 + GFF583 0.25 -1.0
583,868 + GFF583 0.25 -1.6
583,876 - GFF583 0.26 -0.6
583,876 - GFF583 0.26 -0.3
583,876 - GFF583 0.26 -1.0
583,876 - GFF583 0.26 -1.9
583,876 - GFF583 0.26 +1.1
583,876 - GFF583 0.26 -0.9
583,876 - GFF583 0.26 -0.1
583,876 - GFF583 0.26 -0.9
583,876 - GFF583 0.26 +0.4
583,876 - GFF583 0.26 -1.8
583,876 - GFF583 0.26 -0.9
583,917 + GFF583 0.29 +0.3
583,917 + GFF583 0.29 -0.9
583,917 + GFF583 0.29 +1.8
583,917 + GFF583 0.29 -1.7
583,917 + GFF583 0.29 +0.6
583,920 - GFF583 0.29 -1.1
583,925 - GFF583 0.29 -1.7
583,925 - GFF583 0.29 -0.2
583,925 - GFF583 0.29 -1.2
583,925 - GFF583 0.29 +0.1
583,925 - GFF583 0.29 +1.0
583,950 - GFF583 0.31 -2.0
583,992 + GFF583 0.35 -0.7
583,995 - GFF583 0.35 -1.5
584,000 - GFF583 0.35 +1.4
584,000 - GFF583 0.35 -1.3
584,014 + GFF583 0.36 -1.2
584,014 + GFF583 0.36 +0.9
584,014 + GFF583 0.36 -0.5
584,014 + GFF583 0.36 +1.8
584,014 + GFF583 0.36 +1.0
584,014 + GFF583 0.36 +0.7
584,022 - GFF583 0.37 -0.1
584,022 - GFF583 0.37 -0.1
584,022 - GFF583 0.37 +0.3
584,070 + GFF583 0.40 -0.8
584,070 + GFF583 0.40 -0.2
584,078 - GFF583 0.41 +0.3
584,106 + GFF583 0.43 -0.7
584,130 + GFF583 0.45 -0.4
584,155 + GFF583 0.47 +0.0
584,157 + GFF583 0.47 +0.1
584,184 + GFF583 0.49 -1.9
584,189 + GFF583 0.50 +1.7
584,189 + GFF583 0.50 +0.6
584,194 + GFF583 0.50 +1.6
584,206 + GFF583 0.51 -0.9
584,206 + GFF583 0.51 +0.1
584,206 + GFF583 0.51 +0.5
584,214 - GFF583 0.51 -0.8
584,216 + GFF583 0.52 +0.0
584,216 + GFF583 0.52 -0.5
584,234 - GFF583 0.53 -0.1
584,234 - GFF583 0.53 -0.4
584,239 - GFF583 0.53 -0.8
584,258 - GFF583 0.55 -0.2
584,279 + GFF583 0.56 -2.5
584,279 + GFF583 0.56 +1.3
584,287 - GFF583 0.57 -1.4
584,306 + GFF583 0.58 +0.4
584,306 + GFF583 0.58 +0.3
584,311 + GFF583 0.59 +0.4
584,314 - GFF583 0.59 -0.9
584,348 + GFF583 0.62 -1.4
584,365 + GFF583 0.63 -1.2
584,393 - GFF583 0.65 +0.1
584,393 - GFF583 0.65 -0.9
584,402 + GFF583 0.66 +0.6
584,402 + GFF583 0.66 -0.6
584,402 + GFF583 0.66 +0.5
584,447 + GFF583 0.69 -0.4
584,455 - GFF583 0.70 +0.5
584,455 - GFF583 0.70 +0.0
584,455 - GFF583 0.70 -0.3
584,455 - GFF583 0.70 -1.1
584,463 - GFF583 0.70 -0.6
584,463 - GFF583 0.70 +0.4
584,464 + GFF583 0.70 +0.2
584,464 + GFF583 0.70 +0.0
584,464 + GFF583 0.70 +0.1
584,472 - GFF583 0.71 +0.3
584,477 - GFF583 0.71 -0.9
584,485 - GFF583 0.72 +0.0
584,546 - GFF583 0.77 +0.0
584,546 - GFF583 0.77 +0.2
584,548 - GFF583 0.77 +0.2
584,562 + GFF583 0.78 -0.9
584,570 - GFF583 0.78 -0.8
584,570 - GFF583 0.78 -1.2
584,570 - GFF583 0.78 -1.2
584,580 - GFF583 0.79 -1.6
584,590 - GFF583 0.80 +2.4
584,604 + GFF583 0.81 -0.9
584,606 - GFF583 0.81 -0.1
584,612 - GFF583 0.82 -1.5
584,654 - GFF583 0.85 +0.1
584,671 + GFF583 0.86 -0.4
584,679 - GFF583 0.87 -0.4
584,688 + GFF583 0.87 -1.3
584,701 + GFF583 0.88 -1.3
584,715 - GFF583 0.89 +0.2
584,730 - -0.9
584,749 - +0.3
584,759 - -0.1
584,890 - -0.9
584,890 - -0.3
584,904 + -0.5
585,150 + GFF584 0.27 -1.1
585,158 - GFF584 0.28 +1.5
585,158 - GFF584 0.28 -1.6
585,191 + GFF584 0.32 +0.1
585,192 + GFF584 0.32 -0.6
585,197 + GFF584 0.33 +0.4
585,197 + GFF584 0.33 +2.1
585,197 + GFF584 0.33 +0.2
585,205 - GFF584 0.34 -0.9
585,205 - GFF584 0.34 -0.7
585,212 - GFF584 0.34 -1.5
585,229 - GFF584 0.36 +0.0
585,239 + GFF584 0.38 +0.2
585,239 + GFF584 0.38 -0.2
585,239 + GFF584 0.38 +0.0
585,239 + GFF584 0.38 -0.9
585,239 + GFF584 0.38 -0.3
585,244 + GFF584 0.38 -0.6
585,247 - GFF584 0.39 +0.8
585,247 - GFF584 0.39 -1.6
585,247 - GFF584 0.39 +1.2
585,247 - GFF584 0.39 +2.3
585,247 - GFF584 0.39 -0.7
585,280 - GFF584 0.42 +1.4
585,290 - GFF584 0.44 -0.6
585,290 - GFF584 0.44 -1.9
585,348 - GFF584 0.50 -1.5
585,365 + GFF584 0.52 -1.3
585,372 + GFF584 0.53 -0.0
585,464 + GFF584 0.64 +1.1
585,469 + GFF584 0.65 +1.9
585,499 + GFF584 0.68 +1.1
585,501 - GFF584 0.68 +0.0
585,518 - GFF584 0.70 -0.2
585,527 - GFF584 0.71 -1.1
585,541 + GFF584 0.73 -0.3
585,551 + GFF584 0.74 -1.7
585,554 - GFF584 0.75 -0.8
585,559 - GFF584 0.75 -0.4
585,559 - GFF584 0.75 -0.4
585,561 + GFF584 0.76 -1.0
585,568 + GFF584 0.76 -0.2
585,596 + GFF584 0.80 -1.7
585,654 + GFF584 0.86 +0.1
585,666 + GFF584 0.88 -0.4
585,689 + +0.3
585,713 + -1.4
585,721 - +1.3
585,744 - +0.1
585,748 - -0.3
585,759 + +0.8
585,776 + -0.5
585,776 + +0.3
585,784 - -0.5
585,786 - +1.0
585,786 - +0.8
585,806 + +1.1
585,840 + -0.3
585,848 - +0.8
585,852 + -0.8

Or see this region's nucleotide sequence