Strain Fitness in Sphingobium sp. HT1-2 around GFF5340

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,332,386	+				+0.3
5,332,399	-				+0.2
5,332,399	-				-2.1
5,332,403	+				+0.9
5,332,406	+				-2.7
5,332,411	+				-1.9
5,332,413	+				-0.3
5,332,413	+				-0.4
5,332,421	-				-1.6
5,332,432	+				-0.2
5,332,435	+				-1.4
5,332,437	+				-0.3
5,332,445	-				-2.6
5,332,449	+				-0.5
5,332,451	-				-1.3
5,332,454	+				-0.4
5,332,454	+				-1.5
5,332,461	-				-0.2
5,332,462	-				+0.5
5,332,462	-				+0.3
5,332,474	+				+0.1
5,332,474	+				-0.9
5,332,477	-				-0.5
5,332,482	-				-1.4
5,332,489	-				-1.0
5,332,504	-				-0.4
5,332,509	+				-0.2
5,332,519	+				-2.2
5,332,523	+				+0.1
5,332,528	+				+0.1
5,332,531	-				-0.5
5,332,531	-				-0.7
5,332,535	-				+0.3
5,332,536	+				-0.0
5,332,537	-				+0.3
5,332,546	+				+0.2
5,332,553	+				-0.4
5,332,553	+				-0.7
5,332,553	+				-1.0
5,332,555	-				+0.6
5,332,555	-				-1.0
5,332,561	-				-1.3
5,332,573	+				+0.9
5,332,579	+				-2.1
5,332,582	-				-0.4
5,332,591	+				-1.7
5,332,596	+				-1.8
5,332,596	+				-0.7
5,332,596	+				-0.9
5,332,596	+				-1.7
5,332,596	+				-1.4
5,332,604	-				-0.5
5,332,631	-				-0.2
5,332,646	+				+0.4
5,332,681	+				+0.1
5,332,681	+				-0.5
5,332,690	-				-1.9
5,332,721	+				-1.1
5,332,721	+				-1.6
5,332,726	+				-1.0
5,332,726	+				+0.9
5,332,729	-				-0.1
5,332,729	-				+0.3
5,332,735	+				-1.6
5,332,753	-		GFF5339	0.13	+0.3
5,332,755	-		GFF5339	0.13	+0.4
5,332,811	-		GFF5339	0.22	-2.0
5,332,819	+		GFF5339	0.23	-1.4
5,332,821	+		GFF5339	0.23	-0.1
5,332,829	+		GFF5339	0.24	-1.9
5,332,834	+		GFF5339	0.25	-1.3
5,332,839	+		GFF5339	0.26	-1.4
5,332,839	+		GFF5339	0.26	-0.7
5,332,844	+		GFF5339	0.27	-2.3
5,332,847	-		GFF5339	0.27	-0.9
5,332,847	-		GFF5339	0.27	-2.7
5,332,847	-		GFF5339	0.27	-0.4
5,332,847	-		GFF5339	0.27	-1.0
5,332,852	-		GFF5339	0.28	+0.2
5,332,859	+		GFF5339	0.29	-1.9
5,332,859	+		GFF5339	0.29	+0.5
5,332,859	+		GFF5339	0.29	-2.4
5,332,862	-		GFF5339	0.29	-0.1
5,332,864	+		GFF5339	0.30	+0.6
5,332,864	+		GFF5339	0.30	+0.7
5,332,867	-		GFF5339	0.30	-0.2
5,332,867	-		GFF5339	0.30	-1.4
5,332,867	-		GFF5339	0.30	-0.3
5,332,872	-		GFF5339	0.31	-1.4
5,332,872	-		GFF5339	0.31	-1.0
5,332,872	-		GFF5339	0.31	-1.7
5,332,872	-		GFF5339	0.31	+1.4
5,332,872	-		GFF5339	0.31	-0.3
5,332,874	+		GFF5339	0.31	-0.4
5,332,874	+		GFF5339	0.31	-1.4
5,332,874	+		GFF5339	0.31	+0.9
5,332,882	-		GFF5339	0.33	-1.3
5,332,882	-		GFF5339	0.33	-1.7
5,332,882	-		GFF5339	0.33	-0.6
5,332,889	+		GFF5339	0.34	-1.4
5,332,889	+		GFF5339	0.34	-1.2
5,332,894	+		GFF5339	0.34	-1.2
5,332,894	+		GFF5339	0.34	+0.1
5,332,894	+		GFF5339	0.34	-1.4
5,332,894	+		GFF5339	0.34	-1.0
5,332,894	+		GFF5339	0.34	-0.7
5,332,894	+		GFF5339	0.34	-1.5
5,332,902	-		GFF5339	0.36	-1.0
5,332,902	-		GFF5339	0.36	-1.9
5,332,902	-		GFF5339	0.36	-2.4
5,332,902	-		GFF5339	0.36	-0.8
5,332,902	-		GFF5339	0.36	-1.3
5,332,902	-		GFF5339	0.36	-1.0
5,332,902	-		GFF5339	0.36	+0.2
5,332,902	-		GFF5339	0.36	-0.9
5,332,902	-		GFF5339	0.36	+1.5
5,332,902	-		GFF5339	0.36	-1.7
5,332,902	-		GFF5339	0.36	-0.6
5,332,902	-		GFF5339	0.36	+0.4
5,332,904	+		GFF5339	0.36	-1.3
5,332,908	+		GFF5339	0.37	-0.5
5,332,912	-		GFF5339	0.37	+0.3
5,332,917	-		GFF5339	0.38	-0.3
5,332,919	+		GFF5339	0.38	-1.0
5,332,919	+		GFF5339	0.38	-0.2
5,332,924	+		GFF5339	0.39	-0.7
5,332,927	-		GFF5339	0.40	-1.0
5,332,927	-		GFF5339	0.40	+0.6
5,332,927	-		GFF5339	0.40	+0.7
5,332,927	-		GFF5339	0.40	-0.8
5,332,927	-		GFF5339	0.40	-0.9
5,332,929	+		GFF5339	0.40	-1.0
5,332,932	-		GFF5339	0.40	-0.0
5,332,934	+		GFF5339	0.41	-2.0
5,332,934	+		GFF5339	0.41	-1.3
5,332,937	-		GFF5339	0.41	-2.0
5,332,937	-		GFF5339	0.41	+0.2
5,332,949	-		GFF5339	0.43	-0.5
5,332,951	+		GFF5339	0.43	-1.2
5,332,951	+		GFF5339	0.43	+1.1
5,332,956	+		GFF5339	0.44	-0.3
5,332,956	+		GFF5339	0.44	-0.3
5,332,959	-		GFF5339	0.44	-0.4
5,332,959	-		GFF5339	0.44	-0.7
5,332,959	-		GFF5339	0.44	+0.4
5,332,959	-		GFF5339	0.44	-2.1
5,332,966	+		GFF5339	0.46	-0.4
5,332,966	+		GFF5339	0.46	-0.1
5,332,966	+		GFF5339	0.46	+1.1
5,332,966	+		GFF5339	0.46	-1.2
5,332,974	-		GFF5339	0.47	-2.2
5,332,974	-		GFF5339	0.47	+0.6
5,332,974	-		GFF5339	0.47	-2.8
5,332,975	+		GFF5339	0.47	-0.5
5,332,976	-		GFF5339	0.47	-0.3
5,332,983	-		GFF5339	0.48	-2.4
5,332,984	+		GFF5339	0.48	+1.0
5,332,989	+		GFF5339	0.49	-1.5
5,332,993	-		GFF5339	0.50	-2.3
5,332,994	+		GFF5339	0.50	-0.9
5,332,994	+		GFF5339	0.50	-1.1
5,333,000	+		GFF5339	0.51	-0.1
5,333,002	-		GFF5339	0.51	-0.9
5,333,002	-		GFF5339	0.51	+0.7
5,333,009	+		GFF5339	0.52	+0.9
5,333,009	+		GFF5339	0.52	-0.6
5,333,009	+		GFF5339	0.52	-0.3
5,333,009	+		GFF5339	0.52	-1.4
5,333,009	+		GFF5339	0.52	-0.9
5,333,009	+		GFF5339	0.52	-1.5
5,333,009	+		GFF5339	0.52	-0.9
5,333,009	+		GFF5339	0.52	-1.7
5,333,009	+		GFF5339	0.52	-0.3
5,333,009	+		GFF5339	0.52	-0.7
5,333,009	+		GFF5339	0.52	-1.8
5,333,009	+		GFF5339	0.52	-0.9
5,333,009	+		GFF5339	0.52	+1.3
5,333,009	+		GFF5339	0.52	-0.3
5,333,009	+		GFF5339	0.52	-0.0
5,333,012	-		GFF5339	0.53	-0.7
5,333,014	+		GFF5339	0.53	-2.4
5,333,017	-		GFF5339	0.53	-1.3
5,333,017	-		GFF5339	0.53	-0.8
5,333,017	-		GFF5339	0.53	-0.6
5,333,017	-		GFF5339	0.53	-1.0
5,333,017	-		GFF5339	0.53	-1.2
5,333,017	-		GFF5339	0.53	-1.7
5,333,017	-		GFF5339	0.53	-1.6
5,333,017	-		GFF5339	0.53	-3.1
5,333,017	-		GFF5339	0.53	+0.3
5,333,017	-		GFF5339	0.53	-0.0
5,333,017	-		GFF5339	0.53	-1.0
5,333,017	-		GFF5339	0.53	-1.0
5,333,017	-		GFF5339	0.53	+0.7
5,333,017	-		GFF5339	0.53	-0.6
5,333,017	-		GFF5339	0.53	-2.0
5,333,017	-		GFF5339	0.53	-0.9
5,333,017	-		GFF5339	0.53	-1.9
5,333,017	-		GFF5339	0.53	-2.2
5,333,020	+		GFF5339	0.54	+0.4
5,333,022	-		GFF5339	0.54	-1.4
5,333,022	-		GFF5339	0.54	-1.0
5,333,022	-		GFF5339	0.54	-1.1
5,333,028	-		GFF5339	0.55	-0.3
5,333,028	-		GFF5339	0.55	-2.0
5,333,028	-		GFF5339	0.55	-0.0
5,333,043	-		GFF5339	0.58	-1.7
5,333,079	+		GFF5339	0.63	-0.2
5,333,081	+		GFF5339	0.63	-1.3
5,333,091	+		GFF5339	0.65	+0.4
5,333,091	+		GFF5339	0.65	-1.8
5,333,091	+		GFF5339	0.65	-0.7
5,333,091	+		GFF5339	0.65	+0.1
5,333,091	+		GFF5339	0.65	-0.6
5,333,091	+		GFF5339	0.65	-0.9
5,333,091	+		GFF5339	0.65	+0.6
5,333,091	+		GFF5339	0.65	-0.3
5,333,091	+		GFF5339	0.65	-0.0
5,333,091	+		GFF5339	0.65	-1.7
5,333,091	+		GFF5339	0.65	-1.4
5,333,091	+		GFF5339	0.65	-0.1
5,333,097	-		GFF5339	0.66	+0.9
5,333,099	-		GFF5339	0.66	-1.3
5,333,099	-		GFF5339	0.66	-1.6
5,333,099	-		GFF5339	0.66	+0.1
5,333,099	-		GFF5339	0.66	-2.3
5,333,099	-		GFF5339	0.66	-1.3
5,333,099	-		GFF5339	0.66	-1.8
5,333,099	-		GFF5339	0.66	-0.2
5,333,099	-		GFF5339	0.66	-2.0
5,333,099	-		GFF5339	0.66	-1.8
5,333,099	-		GFF5339	0.66	-1.2
5,333,099	-		GFF5339	0.66	+0.6
5,333,107	-		GFF5339	0.67	-0.9
5,333,124	+		GFF5339	0.70	-0.4
5,333,124	+		GFF5339	0.70	-2.9
5,333,137	-		GFF5339	0.72	-0.2
5,333,137	-		GFF5339	0.72	-1.2
5,333,179	+		GFF5339	0.79	-2.0
5,333,179	+		GFF5339	0.79	-1.0
5,333,179	+		GFF5339	0.79	-0.7
5,333,179	+		GFF5339	0.79	+0.2
5,333,179	+		GFF5339	0.79	-1.2
5,333,179	+		GFF5339	0.79	-2.2
5,333,194	+		GFF5339	0.81	-0.9
5,333,202	-		GFF5339	0.82	-0.4
5,333,211	+		GFF5339	0.84	+0.0
5,333,211	+		GFF5339	0.84	-1.4
5,333,211	+		GFF5339	0.84	-0.9
5,333,211	+		GFF5339	0.84	-0.8
5,333,219	-		GFF5339	0.85	-1.7
5,333,219	-		GFF5339	0.85	-2.3
5,333,219	-		GFF5339	0.85	-0.7
5,333,236	+		GFF5339	0.87	-1.2
5,333,246	+		GFF5339	0.89	-0.8
5,333,254	-				+0.1
5,333,254	-				-0.4
5,333,311	+				-1.1
5,333,311	+				-1.3
5,333,311	+				-1.7
5,333,319	-				-0.6
5,333,319	-				-1.3
5,333,319	-				-1.9
5,333,319	-				-2.0
5,333,319	-				-0.5
5,333,319	-				-1.1
5,333,335	-				+0.0
5,333,335	-				-0.7
5,333,337	-				-1.5
5,333,351	-				-1.6
5,333,356	-				-0.7
5,333,398	+				-1.4
5,333,398	+				-0.1
5,333,400	+				-1.5
5,333,401	-				-1.4
5,333,441	-		GFF5340	0.12	-2.0
5,333,489	-		GFF5340	0.19	-0.9
5,333,495	-		GFF5340	0.20	-1.5
5,333,512	+		GFF5340	0.23	+0.1
5,333,524	-		GFF5340	0.25	-1.2
5,333,528	+		GFF5340	0.26	-0.6
5,333,550	+		GFF5340	0.29	-0.8
5,333,577	+		GFF5340	0.33	-0.3
5,333,585	-		GFF5340	0.35	-1.5
5,333,616	-		GFF5340	0.39	-1.6
5,333,634	+		GFF5340	0.42	-1.6
5,333,649	+		GFF5340	0.45	-1.6
5,333,649	+		GFF5340	0.45	-1.1
5,333,650	+		GFF5340	0.45	-2.2
5,333,657	-		GFF5340	0.46	+0.5
5,333,672	+		GFF5340	0.48	-1.2
5,333,673	+		GFF5340	0.48	-0.2
5,333,720	-		GFF5340	0.56	-1.9
5,333,720	-		GFF5340	0.56	+0.9
5,333,720	-		GFF5340	0.56	-1.6
5,333,722	-		GFF5340	0.56	-1.1
5,333,737	-		GFF5340	0.59	-1.4
5,333,748	+		GFF5340	0.60	-0.8
5,333,753	+		GFF5340	0.61	+1.8
5,333,753	+		GFF5340	0.61	-1.1
5,333,758	+		GFF5340	0.62	-0.9
5,333,758	+		GFF5340	0.62	-1.0
5,333,758	+		GFF5340	0.62	-1.0
5,333,761	-		GFF5340	0.62	-0.7
5,333,761	-		GFF5340	0.62	+0.5
5,333,761	-		GFF5340	0.62	+0.9
5,333,761	-		GFF5340	0.62	+0.4
5,333,761	-		GFF5340	0.62	-0.3
5,333,761	-		GFF5340	0.62	-0.3
5,333,764	-		GFF5340	0.63	-0.7
5,333,766	-		GFF5340	0.63	-1.3
5,333,777	-		GFF5340	0.65	-2.7
5,333,777	-		GFF5340	0.65	-2.2
5,333,805	+		GFF5340	0.69	-0.7
5,333,810	+		GFF5340	0.70	-1.2
5,333,813	-		GFF5340	0.71	-0.9
5,333,815	+		GFF5340	0.71	-0.5
5,333,815	+		GFF5340	0.71	-0.1
5,333,818	-		GFF5340	0.71	-1.1
5,333,825	+		GFF5340	0.73	+0.1
5,333,827	+		GFF5340	0.73	-1.0
5,333,827	+		GFF5340	0.73	+0.6
5,333,827	+		GFF5340	0.73	-1.4
5,333,827	+		GFF5340	0.73	+1.0
5,333,833	+		GFF5340	0.74	-0.7
5,333,833	+		GFF5340	0.74	-0.5
5,333,838	+		GFF5340	0.75	+0.9
5,333,841	+		GFF5340	0.75	-0.3
5,333,841	+		GFF5340	0.75	-0.7
5,333,841	+		GFF5340	0.75	-1.6
5,333,841	+		GFF5340	0.75	-0.6
5,333,841	-		GFF5340	0.75	-1.4
5,333,843	+		GFF5340	0.75	-0.5
5,333,849	-		GFF5340	0.76	+0.5
5,333,851	+		GFF5340	0.77	-1.3
5,333,851	+		GFF5340	0.77	-1.5
5,333,857	+		GFF5340	0.78	+0.4
5,333,868	+		GFF5340	0.79	-0.6
5,333,869	+		GFF5340	0.79	-1.1
5,333,876	-		GFF5340	0.81	+0.1
5,333,897	+		GFF5340	0.84	-0.5
5,333,897	+		GFF5340	0.84	-1.2
5,333,897	+		GFF5340	0.84	-0.7
5,333,905	-		GFF5340	0.85	-1.4
5,333,913	+		GFF5340	0.86	+0.3
5,333,936	+				-2.0
5,333,936	+				-0.3
5,333,936	+				-1.9
5,333,944	-				-1.6
5,333,944	-				-0.3
5,333,944	-				+0.4
5,333,944	-				+0.4
5,333,949	+				-0.6
5,333,949	+				-1.3
5,333,952	-				-1.8
5,333,952	-				-1.6
5,333,967	+				-1.1
5,333,983	-				-2.3
5,333,991	-				-0.7
5,334,000	-				+0.1
5,334,026	+				-1.7
5,334,033	+				-1.3
5,334,035	-				-2.3
5,334,036	-				-2.6
5,334,038	+				-1.7
5,334,038	+				-1.6
5,334,041	-				-1.0
5,334,059	-				+0.5
5,334,073	+		GFF5341	0.14	-0.2
5,334,083	+		GFF5341	0.20	-0.3
5,334,090	+		GFF5341	0.24	-1.2
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5,334,367	+				-2.0
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5,334,374	+				-0.6
5,334,374	+				-1.2
5,334,374	+				+0.0
5,334,374	+				-1.2
5,334,374	+				-1.2
5,334,374	+				-2.0
5,334,374	+				-0.9
5,334,374	+				-1.9
5,334,374	+				+0.6
5,334,374	+				-1.5
5,334,374	+				-0.1
5,334,374	+				-1.7
5,334,374	+				+1.0
5,334,374	+				-0.1
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5,334,382	-				-0.5
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5,334,382	-				+0.2
5,334,382	-				-2.1
5,334,382	-				-1.8
5,334,382	-				-1.1
5,334,382	-				+0.1
5,334,382	-				-2.6
5,334,382	-				-1.0
5,334,382	-				+0.3
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5,334,409	+				-2.0
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5,334,411	-				-1.3
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