Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5278 and GFF5279 are separated by 125 nucleotides GFF5279 and GFF5280 are separated by 945 nucleotides
GFF5278 - GNAT family acetyltransferase PA5433, at 5,269,661 to 5,270,335
GFF5278
GFF5279 - Transcriptional regulator, LysR family, at 5,270,461 to 5,270,988
GFF5279
GFF5280 - hypothetical protein, at 5,271,934 to 5,272,179
GFF5280
Position (kb) 5270
5271 Strain fitness (log2 ratio) -2
-1
0
1 at 5269.510 kb on - strand at 5269.534 kb on + strand at 5269.544 kb on + strand at 5269.547 kb on - strand at 5269.562 kb on + strand at 5269.574 kb on + strand at 5269.580 kb on - strand at 5269.582 kb on - strand at 5269.594 kb on + strand at 5269.594 kb on + strand at 5269.594 kb on + strand at 5269.601 kb on + strand at 5269.612 kb on + strand at 5269.613 kb on + strand at 5269.621 kb on - strand at 5269.632 kb on - strand at 5269.645 kb on + strand at 5269.645 kb on + strand at 5269.645 kb on + strand at 5269.645 kb on + strand at 5269.653 kb on - strand at 5269.653 kb on - strand at 5269.653 kb on - strand at 5269.659 kb on + strand at 5269.667 kb on - strand at 5269.668 kb on + strand at 5269.674 kb on + strand at 5269.674 kb on + strand at 5269.674 kb on + strand at 5269.674 kb on + strand at 5269.674 kb on + strand at 5269.674 kb on + strand at 5269.676 kb on - strand at 5269.682 kb on - strand at 5269.682 kb on - strand at 5269.682 kb on - strand at 5269.682 kb on - strand at 5269.682 kb on - strand at 5269.684 kb on + strand at 5269.692 kb on - strand at 5269.697 kb on + strand at 5269.697 kb on + strand at 5269.697 kb on + strand at 5269.697 kb on + strand at 5269.705 kb on - strand at 5269.705 kb on - strand at 5269.728 kb on + strand at 5269.730 kb on + strand, within GFF5278 at 5269.736 kb on - strand, within GFF5278 at 5269.742 kb on + strand, within GFF5278 at 5269.747 kb on + strand, within GFF5278 at 5269.749 kb on - strand, within GFF5278 at 5269.749 kb on - strand, within GFF5278 at 5269.750 kb on - strand, within GFF5278 at 5269.750 kb on - strand, within GFF5278 at 5269.797 kb on + strand, within GFF5278 at 5269.797 kb on + strand, within GFF5278 at 5269.797 kb on + strand, within GFF5278 at 5269.797 kb on + strand, within GFF5278 at 5269.805 kb on + strand, within GFF5278 at 5269.805 kb on - strand, within GFF5278 at 5269.805 kb on - strand, within GFF5278 at 5269.805 kb on - strand, within GFF5278 at 5269.813 kb on - strand, within GFF5278 at 5269.813 kb on - strand, within GFF5278 at 5269.821 kb on + strand, within GFF5278 at 5269.821 kb on + strand, within GFF5278 at 5269.821 kb on + strand, within GFF5278 at 5269.829 kb on - strand, within GFF5278 at 5269.844 kb on + strand, within GFF5278 at 5269.877 kb on - strand, within GFF5278 at 5269.904 kb on + strand, within GFF5278 at 5269.912 kb on - strand, within GFF5278 at 5269.940 kb on + strand, within GFF5278 at 5269.941 kb on - strand, within GFF5278 at 5269.941 kb on - strand, within GFF5278 at 5269.955 kb on - strand, within GFF5278 at 5269.957 kb on + strand, within GFF5278 at 5269.957 kb on + strand, within GFF5278 at 5269.965 kb on - strand, within GFF5278 at 5269.965 kb on - strand, within GFF5278 at 5269.988 kb on + strand, within GFF5278 at 5269.991 kb on - strand, within GFF5278 at 5269.991 kb on - strand, within GFF5278 at 5270.001 kb on - strand, within GFF5278 at 5270.032 kb on + strand, within GFF5278 at 5270.037 kb on - strand, within GFF5278 at 5270.037 kb on - strand, within GFF5278 at 5270.040 kb on + strand, within GFF5278 at 5270.048 kb on - strand, within GFF5278 at 5270.048 kb on - strand, within GFF5278 at 5270.058 kb on - strand, within GFF5278 at 5270.068 kb on - strand, within GFF5278 at 5270.075 kb on - strand, within GFF5278 at 5270.100 kb on + strand, within GFF5278 at 5270.105 kb on + strand, within GFF5278 at 5270.108 kb on - strand, within GFF5278 at 5270.108 kb on - strand, within GFF5278 at 5270.113 kb on - strand, within GFF5278 at 5270.113 kb on - strand, within GFF5278 at 5270.113 kb on - strand, within GFF5278 at 5270.113 kb on - strand, within GFF5278 at 5270.134 kb on + strand, within GFF5278 at 5270.139 kb on + strand, within GFF5278 at 5270.142 kb on - strand, within GFF5278 at 5270.142 kb on - strand, within GFF5278 at 5270.170 kb on + strand, within GFF5278 at 5270.189 kb on + strand, within GFF5278 at 5270.218 kb on - strand, within GFF5278 at 5270.228 kb on + strand, within GFF5278 at 5270.228 kb on + strand, within GFF5278 at 5270.228 kb on + strand, within GFF5278 at 5270.228 kb on + strand, within GFF5278 at 5270.228 kb on + strand, within GFF5278 at 5270.228 kb on + strand, within GFF5278 at 5270.236 kb on - strand, within GFF5278 at 5270.236 kb on - strand, within GFF5278 at 5270.236 kb on - strand, within GFF5278 at 5270.236 kb on - strand, within GFF5278 at 5270.238 kb on + strand, within GFF5278 at 5270.241 kb on - strand, within GFF5278 at 5270.241 kb on - strand, within GFF5278 at 5270.259 kb on + strand, within GFF5278 at 5270.259 kb on + strand, within GFF5278 at 5270.268 kb on - strand at 5270.292 kb on + strand at 5270.295 kb on + strand at 5270.304 kb on - strand at 5270.313 kb on - strand at 5270.313 kb on - strand at 5270.315 kb on + strand at 5270.315 kb on + strand at 5270.325 kb on + strand at 5270.325 kb on + strand at 5270.325 kb on + strand at 5270.325 kb on + strand at 5270.325 kb on + strand at 5270.333 kb on - strand at 5270.333 kb on - strand at 5270.333 kb on - strand at 5270.363 kb on + strand at 5270.363 kb on + strand at 5270.374 kb on - strand at 5270.385 kb on + strand at 5270.413 kb on + strand at 5270.456 kb on + strand at 5270.484 kb on - strand at 5270.547 kb on + strand, within GFF5279 at 5270.555 kb on - strand, within GFF5279 at 5270.555 kb on - strand, within GFF5279 at 5270.555 kb on - strand, within GFF5279 at 5270.560 kb on - strand, within GFF5279 at 5270.588 kb on - strand, within GFF5279 at 5270.588 kb on - strand, within GFF5279 at 5270.589 kb on + strand, within GFF5279 at 5270.624 kb on - strand, within GFF5279 at 5270.679 kb on + strand, within GFF5279 at 5270.697 kb on + strand, within GFF5279 at 5270.719 kb on - strand, within GFF5279 at 5270.719 kb on - strand, within GFF5279 at 5270.719 kb on - strand, within GFF5279 at 5270.729 kb on - strand, within GFF5279 at 5270.729 kb on - strand, within GFF5279 at 5270.748 kb on + strand, within GFF5279 at 5270.757 kb on + strand, within GFF5279 at 5270.765 kb on - strand, within GFF5279 at 5270.801 kb on + strand, within GFF5279 at 5270.802 kb on + strand, within GFF5279 at 5270.802 kb on + strand, within GFF5279 at 5270.802 kb on + strand, within GFF5279 at 5270.810 kb on - strand, within GFF5279 at 5270.810 kb on - strand, within GFF5279 at 5270.810 kb on - strand, within GFF5279 at 5270.850 kb on + strand, within GFF5279 at 5270.862 kb on + strand, within GFF5279 at 5270.870 kb on - strand, within GFF5279 at 5270.900 kb on - strand, within GFF5279 at 5270.902 kb on + strand, within GFF5279 at 5270.906 kb on - strand, within GFF5279 at 5270.906 kb on - strand, within GFF5279 at 5270.906 kb on - strand, within GFF5279 at 5270.907 kb on + strand, within GFF5279 at 5270.915 kb on - strand, within GFF5279 at 5270.917 kb on + strand, within GFF5279 at 5270.917 kb on + strand, within GFF5279 at 5270.937 kb on + strand at 5270.945 kb on - strand at 5270.958 kb on + strand at 5270.961 kb on - strand at 5270.972 kb on + strand at 5270.972 kb on + strand at 5270.980 kb on - strand at 5270.980 kb on - strand at 5270.981 kb on - strand at 5271.011 kb on + strand at 5271.020 kb on - strand at 5271.024 kb on - strand at 5271.029 kb on - strand at 5271.042 kb on + strand at 5271.066 kb on + strand at 5271.079 kb on + strand at 5271.084 kb on - strand at 5271.120 kb on + strand at 5271.162 kb on + strand at 5271.165 kb on + strand at 5271.202 kb on + strand at 5271.235 kb on - strand at 5271.238 kb on - strand at 5271.249 kb on - strand at 5271.259 kb on + strand at 5271.259 kb on + strand at 5271.267 kb on + strand at 5271.277 kb on + strand at 5271.277 kb on + strand at 5271.280 kb on - strand at 5271.280 kb on - strand at 5271.315 kb on + strand at 5271.322 kb on - strand at 5271.323 kb on - strand at 5271.336 kb on + strand at 5271.342 kb on + strand at 5271.342 kb on + strand at 5271.342 kb on + strand at 5271.343 kb on + strand at 5271.343 kb on - strand at 5271.344 kb on - strand at 5271.350 kb on - strand at 5271.369 kb on - strand at 5271.382 kb on + strand at 5271.390 kb on - strand at 5271.390 kb on - strand at 5271.394 kb on + strand at 5271.394 kb on + strand at 5271.394 kb on + strand at 5271.394 kb on + strand at 5271.396 kb on - strand at 5271.402 kb on - strand at 5271.402 kb on - strand at 5271.402 kb on - strand at 5271.402 kb on - strand at 5271.402 kb on - strand at 5271.412 kb on - strand at 5271.443 kb on - strand at 5271.449 kb on - strand at 5271.479 kb on + strand at 5271.535 kb on + strand at 5271.541 kb on + strand at 5271.541 kb on - strand at 5271.546 kb on - strand at 5271.549 kb on + strand at 5271.549 kb on + strand at 5271.549 kb on + strand at 5271.557 kb on - strand at 5271.557 kb on - strand at 5271.557 kb on - strand at 5271.557 kb on - strand at 5271.557 kb on - strand at 5271.557 kb on - strand at 5271.567 kb on - strand at 5271.610 kb on - strand at 5271.620 kb on - strand at 5271.650 kb on - strand at 5271.705 kb on - strand at 5271.712 kb on + strand at 5271.730 kb on - strand at 5271.777 kb on + strand at 5271.804 kb on - strand at 5271.981 kb on + strand, within GFF5280
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 5,269,510 - -1.3 5,269,534 + -0.4 5,269,544 + -0.7 5,269,547 - -0.7 5,269,562 + -1.3 5,269,574 + -1.3 5,269,580 - +0.2 5,269,582 - -2.2 5,269,594 + +0.1 5,269,594 + -0.9 5,269,594 + -0.8 5,269,601 + -1.0 5,269,612 + -0.9 5,269,613 + -0.4 5,269,621 - +0.3 5,269,632 - -0.7 5,269,645 + -0.4 5,269,645 + -0.6 5,269,645 + -1.1 5,269,645 + -0.1 5,269,653 - +0.6 5,269,653 - -1.1 5,269,653 - +0.0 5,269,659 + +0.3 5,269,667 - +0.0 5,269,668 + -0.3 5,269,674 + -1.4 5,269,674 + +0.1 5,269,674 + +0.3 5,269,674 + +0.2 5,269,674 + -1.7 5,269,674 + -1.1 5,269,676 - -0.5 5,269,682 - +0.1 5,269,682 - -1.0 5,269,682 - +0.3 5,269,682 - -0.1 5,269,682 - +0.1 5,269,684 + +0.5 5,269,692 - +1.6 5,269,697 + -0.6 5,269,697 + -0.4 5,269,697 + +0.5 5,269,697 + -2.3 5,269,705 - -0.1 5,269,705 - -0.2 5,269,728 + -1.3 5,269,730 + GFF5278 0.10 -1.8 5,269,736 - GFF5278 0.11 +0.1 5,269,742 + GFF5278 0.12 +0.1 5,269,747 + GFF5278 0.13 -1.2 5,269,749 - GFF5278 0.13 -0.1 5,269,749 - GFF5278 0.13 +1.4 5,269,750 - GFF5278 0.13 -1.3 5,269,750 - GFF5278 0.13 -0.4 5,269,797 + GFF5278 0.20 +0.0 5,269,797 + GFF5278 0.20 -0.7 5,269,797 + GFF5278 0.20 +0.0 5,269,797 + GFF5278 0.20 -0.1 5,269,805 + GFF5278 0.21 +0.5 5,269,805 - GFF5278 0.21 -1.6 5,269,805 - GFF5278 0.21 -0.4 5,269,805 - GFF5278 0.21 -1.1 5,269,813 - GFF5278 0.23 +0.2 5,269,813 - GFF5278 0.23 -1.0 5,269,821 + GFF5278 0.24 -0.9 5,269,821 + GFF5278 0.24 -0.1 5,269,821 + GFF5278 0.24 -1.1 5,269,829 - GFF5278 0.25 -0.7 5,269,844 + GFF5278 0.27 +0.3 5,269,877 - GFF5278 0.32 -2.0 5,269,904 + GFF5278 0.36 +1.0 5,269,912 - GFF5278 0.37 -1.4 5,269,940 + GFF5278 0.41 -1.1 5,269,941 - GFF5278 0.41 -0.1 5,269,941 - GFF5278 0.41 -0.7 5,269,955 - GFF5278 0.44 -1.0 5,269,957 + GFF5278 0.44 +0.1 5,269,957 + GFF5278 0.44 -0.7 5,269,965 - GFF5278 0.45 -0.5 5,269,965 - GFF5278 0.45 -1.8 5,269,988 + GFF5278 0.48 -0.4 5,269,991 - GFF5278 0.49 -0.1 5,269,991 - GFF5278 0.49 -0.7 5,270,001 - GFF5278 0.50 +0.3 5,270,032 + GFF5278 0.55 +0.5 5,270,037 - GFF5278 0.56 -0.7 5,270,037 - GFF5278 0.56 -0.7 5,270,040 + GFF5278 0.56 -1.9 5,270,048 - GFF5278 0.57 +0.3 5,270,048 - GFF5278 0.57 -2.1 5,270,058 - GFF5278 0.59 -0.4 5,270,068 - GFF5278 0.60 +0.1 5,270,075 - GFF5278 0.61 -0.7 5,270,100 + GFF5278 0.65 +0.1 5,270,105 + GFF5278 0.66 +0.6 5,270,108 - GFF5278 0.66 -0.3 5,270,108 - GFF5278 0.66 +0.9 5,270,113 - GFF5278 0.67 +0.6 5,270,113 - GFF5278 0.67 -2.1 5,270,113 - GFF5278 0.67 -0.4 5,270,113 - GFF5278 0.67 +0.5 5,270,134 + GFF5278 0.70 -0.1 5,270,139 + GFF5278 0.71 -1.4 5,270,142 - GFF5278 0.71 +0.3 5,270,142 - GFF5278 0.71 +0.7 5,270,170 + GFF5278 0.75 -0.0 5,270,189 + GFF5278 0.78 +0.0 5,270,218 - GFF5278 0.83 -0.1 5,270,228 + GFF5278 0.84 -0.9 5,270,228 + GFF5278 0.84 +0.2 5,270,228 + GFF5278 0.84 -1.0 5,270,228 + GFF5278 0.84 -1.4 5,270,228 + GFF5278 0.84 -2.0 5,270,228 + GFF5278 0.84 -0.5 5,270,236 - GFF5278 0.85 -0.0 5,270,236 - GFF5278 0.85 -1.5 5,270,236 - GFF5278 0.85 +0.0 5,270,236 - GFF5278 0.85 -0.3 5,270,238 + GFF5278 0.85 -0.4 5,270,241 - GFF5278 0.86 -1.0 5,270,241 - GFF5278 0.86 -0.7 5,270,259 + GFF5278 0.89 -0.9 5,270,259 + GFF5278 0.89 +0.2 5,270,268 - +0.5 5,270,292 + -0.4 5,270,295 + +0.2 5,270,304 - -0.1 5,270,313 - -0.4 5,270,313 - +1.0 5,270,315 + +0.1 5,270,315 + -1.3 5,270,325 + +0.1 5,270,325 + -0.0 5,270,325 + -0.9 5,270,325 + -1.0 5,270,325 + -0.7 5,270,333 - -0.7 5,270,333 - +1.1 5,270,333 - -0.1 5,270,363 + +0.8 5,270,363 + -0.3 5,270,374 - -1.0 5,270,385 + -0.8 5,270,413 + +0.9 5,270,456 + -1.4 5,270,484 - -0.6 5,270,547 + GFF5279 0.16 +0.0 5,270,555 - GFF5279 0.18 -1.1 5,270,555 - GFF5279 0.18 -1.8 5,270,555 - GFF5279 0.18 -1.1 5,270,560 - GFF5279 0.19 -0.1 5,270,588 - GFF5279 0.24 -1.7 5,270,588 - GFF5279 0.24 -0.4 5,270,589 + GFF5279 0.24 +0.4 5,270,624 - GFF5279 0.31 -1.2 5,270,679 + GFF5279 0.41 -0.2 5,270,697 + GFF5279 0.45 +0.2 5,270,719 - GFF5279 0.49 -1.4 5,270,719 - GFF5279 0.49 -0.7 5,270,719 - GFF5279 0.49 +0.2 5,270,729 - GFF5279 0.51 -1.3 5,270,729 - GFF5279 0.51 -1.7 5,270,748 + GFF5279 0.54 +0.8 5,270,757 + GFF5279 0.56 -0.7 5,270,765 - GFF5279 0.58 +0.1 5,270,801 + GFF5279 0.64 +0.1 5,270,802 + GFF5279 0.65 -1.4 5,270,802 + GFF5279 0.65 -1.7 5,270,802 + GFF5279 0.65 +0.3 5,270,810 - GFF5279 0.66 -1.7 5,270,810 - GFF5279 0.66 +1.5 5,270,810 - GFF5279 0.66 -0.3 5,270,850 + GFF5279 0.74 -2.6 5,270,862 + GFF5279 0.76 -1.5 5,270,870 - GFF5279 0.77 -0.4 5,270,900 - GFF5279 0.83 -1.3 5,270,902 + GFF5279 0.84 -0.7 5,270,906 - GFF5279 0.84 +0.1 5,270,906 - GFF5279 0.84 -1.5 5,270,906 - GFF5279 0.84 +0.5 5,270,907 + GFF5279 0.84 -0.7 5,270,915 - GFF5279 0.86 +1.2 5,270,917 + GFF5279 0.86 -1.7 5,270,917 + GFF5279 0.86 +0.3 5,270,937 + -0.0 5,270,945 - +0.8 5,270,958 + +1.0 5,270,961 - -1.3 5,270,972 + -0.7 5,270,972 + -1.4 5,270,980 - -1.8 5,270,980 - +0.7 5,270,981 - -1.1 5,271,011 + +0.6 5,271,020 - -1.0 5,271,024 - -0.0 5,271,029 - +0.0 5,271,042 + +0.5 5,271,066 + +0.3 5,271,079 + -0.9 5,271,084 - +0.3 5,271,120 + -0.7 5,271,162 + +0.1 5,271,165 + -0.4 5,271,202 + +1.0 5,271,235 - -1.2 5,271,238 - -0.6 5,271,249 - +0.6 5,271,259 + +0.5 5,271,259 + -1.1 5,271,267 + -1.2 5,271,277 + -0.6 5,271,277 + -0.6 5,271,280 - +1.0 5,271,280 - -0.9 5,271,315 + -2.1 5,271,322 - -0.7 5,271,323 - -1.5 5,271,336 + -0.7 5,271,342 + -1.7 5,271,342 + +1.1 5,271,342 + +0.3 5,271,343 + +0.1 5,271,343 - -0.6 5,271,344 - -1.4 5,271,350 - -1.4 5,271,369 - -1.0 5,271,382 + +0.6 5,271,390 - -1.4 5,271,390 - -0.9 5,271,394 + +1.5 5,271,394 + +0.1 5,271,394 + -1.6 5,271,394 + -0.5 5,271,396 - -0.4 5,271,402 - +0.5 5,271,402 - -1.7 5,271,402 - -1.0 5,271,402 - +0.1 5,271,402 - +0.7 5,271,412 - -1.6 5,271,443 - +0.1 5,271,449 - -1.2 5,271,479 + +0.3 5,271,535 + -0.8 5,271,541 + +0.5 5,271,541 - -0.2 5,271,546 - -0.4 5,271,549 + -1.2 5,271,549 + +0.3 5,271,549 + +0.1 5,271,557 - +1.1 5,271,557 - -1.8 5,271,557 - +0.9 5,271,557 - -1.1 5,271,557 - -1.2 5,271,557 - +0.2 5,271,567 - -0.2 5,271,610 - -1.2 5,271,620 - -1.3 5,271,650 - -0.2 5,271,705 - +0.5 5,271,712 + -1.0 5,271,730 - +0.1 5,271,777 + -0.1 5,271,804 - +0.3 5,271,981 + GFF5280 0.19 -0.7
Or see this region's nucleotide sequence